Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS12170 and RPSI07_RS12175 are separated by 271 nucleotides RPSI07_RS12175 and RPSI07_RS12180 are separated by 25 nucleotides RPSI07_RS12180 and RPSI07_RS12185 overlap by 7 nucleotides
RPSI07_RS12170: RPSI07_RS12170 - membrane protein, at 929,586 to 930,236
_RS12170
RPSI07_RS12175: RPSI07_RS12175 - tRNA epoxyqueuosine(34) reductase QueG, at 930,508 to 931,659
_RS12175
RPSI07_RS12180: RPSI07_RS12180 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 931,685 to 932,254
_RS12180
RPSI07_RS12185: RPSI07_RS12185 - N-acetylmuramoyl-L-alanine amidase, at 932,248 to 933,771
_RS12185
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 929.533 kb on - strand at 929.662 kb on + strand, within RPSI07_RS12170 at 929.737 kb on + strand, within RPSI07_RS12170 at 929.737 kb on + strand, within RPSI07_RS12170 at 929.738 kb on - strand, within RPSI07_RS12170 at 929.738 kb on - strand, within RPSI07_RS12170 at 929.738 kb on - strand, within RPSI07_RS12170 at 929.977 kb on + strand, within RPSI07_RS12170 at 929.977 kb on + strand, within RPSI07_RS12170 at 929.978 kb on - strand, within RPSI07_RS12170 at 929.992 kb on + strand, within RPSI07_RS12170 at 929.992 kb on + strand, within RPSI07_RS12170 at 929.992 kb on + strand, within RPSI07_RS12170 at 929.992 kb on + strand, within RPSI07_RS12170 at 929.993 kb on - strand, within RPSI07_RS12170 at 929.993 kb on - strand, within RPSI07_RS12170 at 929.993 kb on - strand, within RPSI07_RS12170 at 929.993 kb on - strand, within RPSI07_RS12170 at 929.993 kb on - strand, within RPSI07_RS12170 at 929.993 kb on - strand, within RPSI07_RS12170 at 929.993 kb on - strand, within RPSI07_RS12170 at 930.256 kb on - strand at 930.264 kb on + strand at 930.265 kb on - strand at 930.265 kb on - strand at 930.265 kb on - strand at 930.266 kb on + strand at 930.266 kb on + strand at 930.266 kb on + strand at 930.267 kb on - strand at 930.267 kb on - strand at 930.267 kb on - strand at 930.267 kb on - strand at 930.337 kb on + strand at 930.337 kb on + strand at 930.337 kb on + strand at 930.338 kb on - strand at 930.338 kb on - strand at 930.360 kb on - strand at 930.362 kb on + strand at 930.510 kb on - strand at 930.510 kb on - strand at 930.635 kb on - strand, within RPSI07_RS12175 at 930.820 kb on + strand, within RPSI07_RS12175 at 930.847 kb on + strand, within RPSI07_RS12175 at 930.847 kb on + strand, within RPSI07_RS12175 at 930.847 kb on + strand, within RPSI07_RS12175 at 930.847 kb on + strand, within RPSI07_RS12175 at 930.848 kb on - strand, within RPSI07_RS12175 at 930.848 kb on - strand, within RPSI07_RS12175 at 930.848 kb on - strand, within RPSI07_RS12175 at 930.848 kb on - strand, within RPSI07_RS12175 at 930.848 kb on - strand, within RPSI07_RS12175 at 930.911 kb on + strand, within RPSI07_RS12175 at 930.911 kb on + strand, within RPSI07_RS12175 at 930.912 kb on - strand, within RPSI07_RS12175 at 930.941 kb on + strand, within RPSI07_RS12175 at 930.941 kb on + strand, within RPSI07_RS12175 at 930.942 kb on - strand, within RPSI07_RS12175 at 931.266 kb on - strand, within RPSI07_RS12175 at 931.364 kb on + strand, within RPSI07_RS12175 at 931.364 kb on + strand, within RPSI07_RS12175 at 931.364 kb on + strand, within RPSI07_RS12175 at 931.364 kb on + strand, within RPSI07_RS12175 at 931.364 kb on + strand, within RPSI07_RS12175 at 931.365 kb on - strand, within RPSI07_RS12175 at 931.365 kb on - strand, within RPSI07_RS12175 at 931.365 kb on - strand, within RPSI07_RS12175 at 931.365 kb on - strand, within RPSI07_RS12175 at 931.445 kb on + strand, within RPSI07_RS12175 at 931.446 kb on + strand, within RPSI07_RS12175 at 931.446 kb on + strand, within RPSI07_RS12175 at 931.446 kb on + strand, within RPSI07_RS12175 at 931.446 kb on + strand, within RPSI07_RS12175 at 931.447 kb on - strand, within RPSI07_RS12175 at 931.447 kb on - strand, within RPSI07_RS12175 at 931.447 kb on - strand, within RPSI07_RS12175 at 931.447 kb on - strand, within RPSI07_RS12175 at 931.447 kb on - strand, within RPSI07_RS12175 at 931.448 kb on + strand, within RPSI07_RS12175 at 931.448 kb on + strand, within RPSI07_RS12175 at 931.448 kb on + strand, within RPSI07_RS12175 at 931.663 kb on + strand at 931.663 kb on + strand at 931.670 kb on + strand at 932.431 kb on + strand, within RPSI07_RS12185 at 932.432 kb on - strand, within RPSI07_RS12185 at 932.581 kb on + strand, within RPSI07_RS12185 at 932.581 kb on + strand, within RPSI07_RS12185 at 932.582 kb on - strand, within RPSI07_RS12185
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 929,533 - -0.5 929,662 + RPSI07_RS12170 0.12 -0.1 929,737 + RPSI07_RS12170 0.23 +0.4 929,737 + RPSI07_RS12170 0.23 +0.5 929,738 - RPSI07_RS12170 0.23 -0.6 929,738 - RPSI07_RS12170 0.23 -0.5 929,738 - RPSI07_RS12170 0.23 +0.3 929,977 + RPSI07_RS12170 0.60 -1.3 929,977 + RPSI07_RS12170 0.60 -1.2 929,978 - RPSI07_RS12170 0.60 +0.7 929,992 + RPSI07_RS12170 0.62 +0.9 929,992 + RPSI07_RS12170 0.62 -2.9 929,992 + RPSI07_RS12170 0.62 +5.8 929,992 + RPSI07_RS12170 0.62 -0.4 929,993 - RPSI07_RS12170 0.63 +0.1 929,993 - RPSI07_RS12170 0.63 -0.4 929,993 - RPSI07_RS12170 0.63 -0.6 929,993 - RPSI07_RS12170 0.63 -0.2 929,993 - RPSI07_RS12170 0.63 -0.1 929,993 - RPSI07_RS12170 0.63 -1.6 929,993 - RPSI07_RS12170 0.63 -0.4 930,256 - -0.8 930,264 + +0.3 930,265 - -2.0 930,265 - -0.2 930,265 - -0.2 930,266 + +1.3 930,266 + +0.4 930,266 + -0.4 930,267 - +0.5 930,267 - -0.4 930,267 - -0.6 930,267 - -1.1 930,337 + +0.5 930,337 + +0.5 930,337 + -0.1 930,338 - -0.2 930,338 - -0.3 930,360 - -0.8 930,362 + +0.0 930,510 - +0.5 930,510 - -0.6 930,635 - RPSI07_RS12175 0.11 -0.9 930,820 + RPSI07_RS12175 0.27 -0.5 930,847 + RPSI07_RS12175 0.29 +0.7 930,847 + RPSI07_RS12175 0.29 -0.2 930,847 + RPSI07_RS12175 0.29 -0.1 930,847 + RPSI07_RS12175 0.29 -1.1 930,848 - RPSI07_RS12175 0.30 +1.2 930,848 - RPSI07_RS12175 0.30 -1.3 930,848 - RPSI07_RS12175 0.30 +0.1 930,848 - RPSI07_RS12175 0.30 +0.6 930,848 - RPSI07_RS12175 0.30 -0.9 930,911 + RPSI07_RS12175 0.35 -0.5 930,911 + RPSI07_RS12175 0.35 -0.9 930,912 - RPSI07_RS12175 0.35 -0.7 930,941 + RPSI07_RS12175 0.38 -0.7 930,941 + RPSI07_RS12175 0.38 -0.9 930,942 - RPSI07_RS12175 0.38 -1.6 931,266 - RPSI07_RS12175 0.66 +0.3 931,364 + RPSI07_RS12175 0.74 -1.8 931,364 + RPSI07_RS12175 0.74 -1.0 931,364 + RPSI07_RS12175 0.74 -0.6 931,364 + RPSI07_RS12175 0.74 -0.6 931,364 + RPSI07_RS12175 0.74 +0.4 931,365 - RPSI07_RS12175 0.74 -0.6 931,365 - RPSI07_RS12175 0.74 -2.0 931,365 - RPSI07_RS12175 0.74 -0.6 931,365 - RPSI07_RS12175 0.74 -0.6 931,445 + RPSI07_RS12175 0.81 -1.0 931,446 + RPSI07_RS12175 0.81 -0.5 931,446 + RPSI07_RS12175 0.81 +0.6 931,446 + RPSI07_RS12175 0.81 -1.7 931,446 + RPSI07_RS12175 0.81 -1.9 931,447 - RPSI07_RS12175 0.82 +0.1 931,447 - RPSI07_RS12175 0.82 +0.9 931,447 - RPSI07_RS12175 0.82 +0.3 931,447 - RPSI07_RS12175 0.82 -1.2 931,447 - RPSI07_RS12175 0.82 -1.8 931,448 + RPSI07_RS12175 0.82 -0.0 931,448 + RPSI07_RS12175 0.82 -2.7 931,448 + RPSI07_RS12175 0.82 +0.2 931,663 + +0.2 931,663 + -0.2 931,670 + -0.7 932,431 + RPSI07_RS12185 0.12 +3.7 932,432 - RPSI07_RS12185 0.12 +0.3 932,581 + RPSI07_RS12185 0.22 -0.9 932,581 + RPSI07_RS12185 0.22 +0.6 932,582 - RPSI07_RS12185 0.22 -1.1
Or see this region's nucleotide sequence