Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS11605

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS11600 and RPSI07_RS11605 are separated by 77 nucleotidesRPSI07_RS11605 and RPSI07_RS11610 are separated by 121 nucleotidesRPSI07_RS11610 and RPSI07_RS11615 are separated by 105 nucleotides RPSI07_RS11600: RPSI07_RS11600 - protein translocase subunit SecF, at 799,514 to 800,482 _RS11600 RPSI07_RS11605: RPSI07_RS11605 - protein translocase subunit SecD, at 800,560 to 802,440 _RS11605 RPSI07_RS11610: RPSI07_RS11610 - preprotein translocase subunit YajC, at 802,562 to 802,897 _RS11610 RPSI07_RS11615: RPSI07_RS11615 - tRNA guanosine(34) transglycosylase Tgt, at 803,003 to 804,166 _RS11615 Position (kb) 800 801 802 803Strain fitness (log2 ratio) -1 0 1 2at 800.556 kb on - strandat 800.556 kb on - strandat 800.562 kb on - strandat 803.104 kb on - strandat 803.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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800,556 - -0.3
800,556 - +0.4
800,562 - +0.1
803,104 - -0.2
803,391 + +2.7

Or see this region's nucleotide sequence