Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS00975 and RPSI07_RS00980 are separated by 24 nucleotides RPSI07_RS00980 and RPSI07_RS00985 are separated by 188 nucleotides RPSI07_RS00985 and RPSI07_RS00990 are separated by 14 nucleotides
RPSI07_RS00975: RPSI07_RS00975 - sensor domain-containing diguanylate cyclase, at 267,609 to 271,145
_RS00975
RPSI07_RS00980: RPSI07_RS00980 - PAS domain S-box protein, at 271,170 to 272,759
_RS00980
RPSI07_RS00985: RPSI07_RS00985 - hypothetical protein, at 272,948 to 273,202
_RS00985
RPSI07_RS00990: RPSI07_RS00990 - siderophore-interacting protein, at 273,217 to 274,050
_RS00990
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.291 kb on + strand, within RPSI07_RS00975 at 270.292 kb on - strand, within RPSI07_RS00975 at 270.292 kb on - strand, within RPSI07_RS00975 at 270.292 kb on - strand, within RPSI07_RS00975 at 270.292 kb on - strand, within RPSI07_RS00975 at 270.292 kb on - strand, within RPSI07_RS00975 at 270.292 kb on - strand, within RPSI07_RS00975 at 270.292 kb on - strand, within RPSI07_RS00975 at 270.294 kb on + strand, within RPSI07_RS00975 at 270.294 kb on + strand, within RPSI07_RS00975 at 270.295 kb on - strand, within RPSI07_RS00975 at 270.348 kb on - strand, within RPSI07_RS00975 at 270.361 kb on - strand, within RPSI07_RS00975 at 270.424 kb on - strand, within RPSI07_RS00975 at 270.424 kb on - strand, within RPSI07_RS00975 at 270.424 kb on - strand, within RPSI07_RS00975 at 270.424 kb on - strand, within RPSI07_RS00975 at 270.424 kb on - strand, within RPSI07_RS00975 at 270.652 kb on + strand, within RPSI07_RS00975 at 270.853 kb on - strand at 270.853 kb on - strand at 270.867 kb on + strand at 270.867 kb on + strand at 270.868 kb on - strand at 271.071 kb on + strand at 271.071 kb on + strand at 271.072 kb on - strand at 271.072 kb on - strand at 271.074 kb on + strand at 271.074 kb on + strand at 271.074 kb on + strand at 271.074 kb on + strand at 271.074 kb on + strand at 271.074 kb on + strand at 271.074 kb on + strand at 271.074 kb on + strand at 271.074 kb on + strand at 271.075 kb on - strand at 271.075 kb on - strand at 271.075 kb on - strand at 271.075 kb on - strand at 271.075 kb on - strand at 271.075 kb on - strand at 271.075 kb on - strand at 271.075 kb on - strand at 271.143 kb on + strand at 271.144 kb on - strand at 271.144 kb on - strand at 271.144 kb on - strand at 271.144 kb on - strand at 271.144 kb on - strand at 271.144 kb on - strand at 272.341 kb on + strand, within RPSI07_RS00980 at 272.341 kb on + strand, within RPSI07_RS00980 at 272.341 kb on + strand, within RPSI07_RS00980 at 272.341 kb on + strand, within RPSI07_RS00980 at 272.342 kb on - strand, within RPSI07_RS00980 at 272.342 kb on - strand, within RPSI07_RS00980 at 272.342 kb on - strand, within RPSI07_RS00980 at 272.342 kb on - strand, within RPSI07_RS00980 at 272.342 kb on - strand, within RPSI07_RS00980 at 272.342 kb on - strand, within RPSI07_RS00980 at 272.342 kb on - strand, within RPSI07_RS00980 at 272.348 kb on + strand, within RPSI07_RS00980 at 272.348 kb on + strand, within RPSI07_RS00980 at 272.348 kb on + strand, within RPSI07_RS00980 at 272.348 kb on + strand, within RPSI07_RS00980 at 272.349 kb on - strand, within RPSI07_RS00980 at 272.349 kb on - strand, within RPSI07_RS00980 at 272.349 kb on - strand, within RPSI07_RS00980 at 272.349 kb on - strand, within RPSI07_RS00980 at 272.349 kb on - strand, within RPSI07_RS00980 at 272.371 kb on + strand, within RPSI07_RS00980 at 272.371 kb on + strand at 272.371 kb on + strand, within RPSI07_RS00980 at 272.371 kb on + strand, within RPSI07_RS00980 at 272.372 kb on - strand, within RPSI07_RS00980 at 272.372 kb on - strand, within RPSI07_RS00980 at 272.372 kb on - strand, within RPSI07_RS00980 at 272.372 kb on - strand, within RPSI07_RS00980 at 272.428 kb on + strand, within RPSI07_RS00980 at 272.428 kb on + strand, within RPSI07_RS00980 at 272.428 kb on + strand, within RPSI07_RS00980 at 272.429 kb on - strand, within RPSI07_RS00980 at 272.429 kb on - strand, within RPSI07_RS00980 at 272.429 kb on - strand, within RPSI07_RS00980 at 272.429 kb on - strand, within RPSI07_RS00980 at 272.482 kb on + strand, within RPSI07_RS00980 at 272.482 kb on + strand, within RPSI07_RS00980 at 272.704 kb on + strand at 272.704 kb on + strand at 272.705 kb on - strand at 272.705 kb on - strand at 272.705 kb on - strand at 273.134 kb on + strand, within RPSI07_RS00985 at 273.134 kb on + strand, within RPSI07_RS00985 at 273.134 kb on + strand, within RPSI07_RS00985 at 273.135 kb on - strand, within RPSI07_RS00985 at 273.135 kb on - strand, within RPSI07_RS00985 at 273.200 kb on + strand at 273.201 kb on - strand at 273.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 270,291 + RPSI07_RS00975 0.76 -0.0 270,291 + RPSI07_RS00975 0.76 -2.2 270,291 + RPSI07_RS00975 0.76 -0.8 270,291 + RPSI07_RS00975 0.76 -0.1 270,291 + RPSI07_RS00975 0.76 -1.5 270,291 + RPSI07_RS00975 0.76 -1.0 270,291 + RPSI07_RS00975 0.76 -1.2 270,291 + RPSI07_RS00975 0.76 -1.2 270,291 + RPSI07_RS00975 0.76 -0.5 270,291 + RPSI07_RS00975 0.76 -1.3 270,291 + RPSI07_RS00975 0.76 -1.0 270,291 + RPSI07_RS00975 0.76 -1.0 270,292 - RPSI07_RS00975 0.76 -0.3 270,292 - RPSI07_RS00975 0.76 +0.7 270,292 - RPSI07_RS00975 0.76 -1.1 270,292 - RPSI07_RS00975 0.76 -2.0 270,292 - RPSI07_RS00975 0.76 -0.2 270,292 - RPSI07_RS00975 0.76 -0.9 270,292 - RPSI07_RS00975 0.76 -1.7 270,294 + RPSI07_RS00975 0.76 +0.0 270,294 + RPSI07_RS00975 0.76 -0.1 270,295 - RPSI07_RS00975 0.76 +0.0 270,348 - RPSI07_RS00975 0.77 -0.4 270,361 - RPSI07_RS00975 0.78 -0.4 270,424 - RPSI07_RS00975 0.80 +2.3 270,424 - RPSI07_RS00975 0.80 -0.9 270,424 - RPSI07_RS00975 0.80 +0.4 270,424 - RPSI07_RS00975 0.80 -1.6 270,424 - RPSI07_RS00975 0.80 -0.8 270,652 + RPSI07_RS00975 0.86 -0.8 270,853 - +0.4 270,853 - -0.7 270,867 + -1.3 270,867 + -1.6 270,868 - -0.8 271,071 + -1.2 271,071 + +1.4 271,072 - +0.8 271,072 - -0.1 271,074 + +1.5 271,074 + +0.7 271,074 + -1.0 271,074 + +0.4 271,074 + -1.0 271,074 + -1.0 271,074 + -1.3 271,074 + -0.6 271,074 + +1.3 271,075 - -0.0 271,075 - -0.6 271,075 - -1.7 271,075 - -2.0 271,075 - -0.9 271,075 - -0.7 271,075 - -0.7 271,075 - -1.8 271,143 + +0.3 271,144 - -1.3 271,144 - +0.4 271,144 - +0.5 271,144 - -0.0 271,144 - -0.3 271,144 - -0.1 272,341 + RPSI07_RS00980 0.74 -0.5 272,341 + RPSI07_RS00980 0.74 -0.1 272,341 + RPSI07_RS00980 0.74 -0.6 272,341 + RPSI07_RS00980 0.74 -0.1 272,342 - RPSI07_RS00980 0.74 -0.1 272,342 - RPSI07_RS00980 0.74 -0.8 272,342 - RPSI07_RS00980 0.74 +1.3 272,342 - RPSI07_RS00980 0.74 -0.2 272,342 - RPSI07_RS00980 0.74 +1.7 272,342 - RPSI07_RS00980 0.74 +1.0 272,342 - RPSI07_RS00980 0.74 -0.6 272,348 + RPSI07_RS00980 0.74 -0.1 272,348 + RPSI07_RS00980 0.74 +0.9 272,348 + RPSI07_RS00980 0.74 -0.6 272,348 + RPSI07_RS00980 0.74 -0.8 272,349 - RPSI07_RS00980 0.74 +0.1 272,349 - RPSI07_RS00980 0.74 +0.8 272,349 - RPSI07_RS00980 0.74 +0.5 272,349 - RPSI07_RS00980 0.74 -2.5 272,349 - RPSI07_RS00980 0.74 +0.9 272,371 + RPSI07_RS00980 0.76 +0.7 272,371 + +2.9 272,371 + RPSI07_RS00980 0.76 +0.5 272,371 + RPSI07_RS00980 0.76 -0.6 272,372 - RPSI07_RS00980 0.76 -0.4 272,372 - RPSI07_RS00980 0.76 -1.2 272,372 - RPSI07_RS00980 0.76 +0.0 272,372 - RPSI07_RS00980 0.76 +0.7 272,428 + RPSI07_RS00980 0.79 +0.2 272,428 + RPSI07_RS00980 0.79 +0.0 272,428 + RPSI07_RS00980 0.79 -1.5 272,429 - RPSI07_RS00980 0.79 -1.1 272,429 - RPSI07_RS00980 0.79 +0.5 272,429 - RPSI07_RS00980 0.79 +0.4 272,429 - RPSI07_RS00980 0.79 -0.3 272,482 + RPSI07_RS00980 0.83 +0.7 272,482 + RPSI07_RS00980 0.83 -0.8 272,704 + -0.8 272,704 + -0.5 272,705 - -0.2 272,705 - -1.2 272,705 - +1.3 273,134 + RPSI07_RS00985 0.73 +1.8 273,134 + RPSI07_RS00985 0.73 -0.9 273,134 + RPSI07_RS00985 0.73 -0.7 273,135 - RPSI07_RS00985 0.73 -0.7 273,135 - RPSI07_RS00985 0.73 +0.5 273,200 + +0.0 273,201 - -0.4 273,269 + -0.8
Or see this region's nucleotide sequence