Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4572 and PfGW456L13_4573 are separated by 155 nucleotides PfGW456L13_4573 and PfGW456L13_4574 overlap by 1 nucleotides PfGW456L13_4574 and PfGW456L13_4575 are separated by 123 nucleotides
PfGW456L13_4572 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 5,101,473 to 5,102,351
_4572
PfGW456L13_4573 - Putative hemolysin, at 5,102,507 to 5,103,262
_4573
PfGW456L13_4574 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 5,103,262 to 5,104,053
_4574
PfGW456L13_4575 - Acyl carrier protein phosphodiesterase (EC 3.1.4.14), at 5,104,177 to 5,104,755
_4575
Position (kb) 5102
5103
5104 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5101.759 kb on + strand, within PfGW456L13_4572 at 5101.759 kb on + strand, within PfGW456L13_4572 at 5101.760 kb on - strand, within PfGW456L13_4572 at 5101.760 kb on - strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.789 kb on + strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.790 kb on - strand, within PfGW456L13_4572 at 5101.822 kb on + strand, within PfGW456L13_4572 at 5101.822 kb on + strand, within PfGW456L13_4572 at 5101.822 kb on + strand, within PfGW456L13_4572 at 5101.823 kb on - strand, within PfGW456L13_4572 at 5101.823 kb on - strand, within PfGW456L13_4572 at 5101.823 kb on - strand, within PfGW456L13_4572 at 5101.866 kb on - strand, within PfGW456L13_4572 at 5101.951 kb on + strand, within PfGW456L13_4572 at 5101.951 kb on + strand, within PfGW456L13_4572 at 5101.952 kb on - strand, within PfGW456L13_4572 at 5101.952 kb on - strand, within PfGW456L13_4572 at 5101.952 kb on - strand, within PfGW456L13_4572 at 5102.090 kb on + strand, within PfGW456L13_4572 at 5102.182 kb on + strand, within PfGW456L13_4572 at 5102.182 kb on + strand, within PfGW456L13_4572 at 5102.351 kb on + strand at 5102.351 kb on + strand at 5102.351 kb on + strand at 5102.351 kb on + strand at 5102.351 kb on + strand at 5102.351 kb on + strand at 5102.351 kb on + strand at 5102.352 kb on - strand at 5102.352 kb on - strand at 5102.352 kb on - strand at 5102.352 kb on - strand at 5102.352 kb on - strand at 5102.352 kb on - strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.375 kb on + strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.376 kb on - strand at 5102.377 kb on + strand at 5102.377 kb on + strand at 5102.377 kb on + strand at 5102.377 kb on + strand at 5102.377 kb on + strand at 5102.377 kb on + strand at 5102.377 kb on + strand at 5102.377 kb on + strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.378 kb on - strand at 5102.395 kb on - strand at 5102.395 kb on - strand at 5102.415 kb on + strand at 5102.416 kb on - strand at 5102.416 kb on - strand at 5102.419 kb on + strand at 5102.419 kb on + strand at 5102.420 kb on - strand at 5102.420 kb on - strand at 5102.420 kb on - strand at 5102.420 kb on - strand at 5102.420 kb on - strand at 5102.420 kb on - strand at 5102.443 kb on + strand at 5102.444 kb on - strand at 5102.678 kb on + strand, within PfGW456L13_4573 at 5102.679 kb on - strand, within PfGW456L13_4573 at 5102.679 kb on - strand, within PfGW456L13_4573 at 5102.679 kb on - strand, within PfGW456L13_4573 at 5102.945 kb on + strand, within PfGW456L13_4573 at 5102.945 kb on + strand, within PfGW456L13_4573 at 5102.946 kb on - strand, within PfGW456L13_4573 at 5102.946 kb on - strand, within PfGW456L13_4573 at 5102.946 kb on - strand, within PfGW456L13_4573 at 5103.128 kb on + strand, within PfGW456L13_4573 at 5103.128 kb on + strand, within PfGW456L13_4573 at 5103.128 kb on + strand, within PfGW456L13_4573 at 5103.128 kb on + strand, within PfGW456L13_4573 at 5103.129 kb on - strand, within PfGW456L13_4573 at 5103.129 kb on - strand, within PfGW456L13_4573 at 5103.129 kb on - strand, within PfGW456L13_4573 at 5103.129 kb on - strand, within PfGW456L13_4573 at 5103.129 kb on - strand, within PfGW456L13_4573 at 5103.129 kb on - strand, within PfGW456L13_4573 at 5103.260 kb on + strand at 5103.260 kb on + strand at 5103.261 kb on - strand at 5103.261 kb on - strand at 5103.261 kb on - strand at 5103.280 kb on + strand at 5103.281 kb on - strand at 5103.281 kb on - strand at 5103.281 kb on - strand at 5103.735 kb on + strand, within PfGW456L13_4574 at 5103.735 kb on + strand, within PfGW456L13_4574 at 5103.735 kb on + strand, within PfGW456L13_4574 at 5103.736 kb on - strand, within PfGW456L13_4574 at 5103.736 kb on - strand, within PfGW456L13_4574 at 5103.805 kb on + strand, within PfGW456L13_4574 at 5103.805 kb on + strand, within PfGW456L13_4574 at 5103.806 kb on - strand, within PfGW456L13_4574 at 5103.806 kb on - strand, within PfGW456L13_4574 at 5104.064 kb on + strand at 5104.077 kb on - strand at 5104.077 kb on - strand at 5104.077 kb on - strand at 5104.077 kb on - strand at 5104.138 kb on + strand at 5104.139 kb on - strand at 5104.178 kb on + strand at 5104.178 kb on + strand at 5104.179 kb on - strand at 5104.179 kb on - strand at 5104.190 kb on + strand at 5104.190 kb on + strand at 5104.190 kb on + strand at 5104.190 kb on + strand at 5104.220 kb on + strand at 5104.221 kb on - strand at 5104.221 kb on - strand at 5104.253 kb on + strand, within PfGW456L13_4575 at 5104.253 kb on + strand, within PfGW456L13_4575 at 5104.253 kb on + strand, within PfGW456L13_4575 at 5104.253 kb on + strand, within PfGW456L13_4575 at 5104.253 kb on + strand, within PfGW456L13_4575 at 5104.253 kb on + strand, within PfGW456L13_4575 at 5104.254 kb on - strand, within PfGW456L13_4575 at 5104.254 kb on - strand, within PfGW456L13_4575 at 5104.254 kb on - strand, within PfGW456L13_4575 at 5104.254 kb on - strand, within PfGW456L13_4575 at 5104.254 kb on - strand, within PfGW456L13_4575 at 5104.254 kb on - strand, within PfGW456L13_4575
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,101,759 + PfGW456L13_4572 0.33 -0.3 5,101,759 + PfGW456L13_4572 0.33 +1.0 5,101,760 - PfGW456L13_4572 0.33 +0.2 5,101,760 - PfGW456L13_4572 0.33 +1.5 5,101,789 + PfGW456L13_4572 0.36 +0.2 5,101,789 + PfGW456L13_4572 0.36 +0.2 5,101,789 + PfGW456L13_4572 0.36 +1.3 5,101,789 + PfGW456L13_4572 0.36 -0.3 5,101,789 + PfGW456L13_4572 0.36 +0.2 5,101,789 + PfGW456L13_4572 0.36 -0.5 5,101,789 + PfGW456L13_4572 0.36 +0.0 5,101,789 + PfGW456L13_4572 0.36 -0.4 5,101,789 + PfGW456L13_4572 0.36 -0.8 5,101,789 + PfGW456L13_4572 0.36 -3.1 5,101,789 + PfGW456L13_4572 0.36 +1.6 5,101,789 + PfGW456L13_4572 0.36 +0.4 5,101,789 + PfGW456L13_4572 0.36 +0.6 5,101,789 + PfGW456L13_4572 0.36 +0.1 5,101,789 + PfGW456L13_4572 0.36 +0.8 5,101,789 + PfGW456L13_4572 0.36 -0.1 5,101,789 + PfGW456L13_4572 0.36 +0.9 5,101,789 + PfGW456L13_4572 0.36 +0.1 5,101,789 + PfGW456L13_4572 0.36 -0.1 5,101,789 + PfGW456L13_4572 0.36 -0.6 5,101,789 + PfGW456L13_4572 0.36 +1.7 5,101,789 + PfGW456L13_4572 0.36 -1.0 5,101,789 + PfGW456L13_4572 0.36 +0.2 5,101,789 + PfGW456L13_4572 0.36 +0.1 5,101,789 + PfGW456L13_4572 0.36 +0.9 5,101,789 + PfGW456L13_4572 0.36 -0.6 5,101,790 - PfGW456L13_4572 0.36 +0.9 5,101,790 - PfGW456L13_4572 0.36 -0.7 5,101,790 - PfGW456L13_4572 0.36 -0.5 5,101,790 - PfGW456L13_4572 0.36 -0.2 5,101,790 - PfGW456L13_4572 0.36 -0.0 5,101,790 - PfGW456L13_4572 0.36 +0.3 5,101,790 - PfGW456L13_4572 0.36 +1.0 5,101,790 - PfGW456L13_4572 0.36 +1.0 5,101,790 - PfGW456L13_4572 0.36 -0.5 5,101,790 - PfGW456L13_4572 0.36 -0.1 5,101,790 - PfGW456L13_4572 0.36 -0.1 5,101,790 - PfGW456L13_4572 0.36 +0.9 5,101,790 - PfGW456L13_4572 0.36 +0.2 5,101,790 - PfGW456L13_4572 0.36 +0.8 5,101,790 - PfGW456L13_4572 0.36 -0.5 5,101,790 - PfGW456L13_4572 0.36 -0.3 5,101,790 - PfGW456L13_4572 0.36 +1.0 5,101,790 - PfGW456L13_4572 0.36 +0.3 5,101,790 - PfGW456L13_4572 0.36 -1.0 5,101,790 - PfGW456L13_4572 0.36 +0.8 5,101,790 - PfGW456L13_4572 0.36 -1.1 5,101,790 - PfGW456L13_4572 0.36 -0.2 5,101,790 - PfGW456L13_4572 0.36 +0.5 5,101,790 - PfGW456L13_4572 0.36 +0.4 5,101,790 - PfGW456L13_4572 0.36 +0.8 5,101,790 - PfGW456L13_4572 0.36 +0.3 5,101,790 - PfGW456L13_4572 0.36 +0.1 5,101,790 - PfGW456L13_4572 0.36 +1.0 5,101,790 - PfGW456L13_4572 0.36 +1.0 5,101,790 - PfGW456L13_4572 0.36 +0.0 5,101,822 + PfGW456L13_4572 0.40 +0.2 5,101,822 + PfGW456L13_4572 0.40 +0.5 5,101,822 + PfGW456L13_4572 0.40 -0.2 5,101,823 - PfGW456L13_4572 0.40 +1.0 5,101,823 - PfGW456L13_4572 0.40 -0.4 5,101,823 - PfGW456L13_4572 0.40 -0.2 5,101,866 - PfGW456L13_4572 0.45 +0.5 5,101,951 + PfGW456L13_4572 0.54 +0.9 5,101,951 + PfGW456L13_4572 0.54 +0.6 5,101,952 - PfGW456L13_4572 0.54 +0.4 5,101,952 - PfGW456L13_4572 0.54 +0.7 5,101,952 - PfGW456L13_4572 0.54 -0.1 5,102,090 + PfGW456L13_4572 0.70 -0.8 5,102,182 + PfGW456L13_4572 0.81 +0.3 5,102,182 + PfGW456L13_4572 0.81 +0.2 5,102,351 + +0.3 5,102,351 + -1.0 5,102,351 + -1.8 5,102,351 + -0.7 5,102,351 + -2.6 5,102,351 + +0.6 5,102,351 + -0.3 5,102,352 - -1.3 5,102,352 - -0.3 5,102,352 - -0.7 5,102,352 - +0.2 5,102,352 - +0.2 5,102,352 - -0.7 5,102,375 + -2.6 5,102,375 + +0.8 5,102,375 + +0.3 5,102,375 + +0.8 5,102,375 + +0.3 5,102,375 + +0.2 5,102,375 + +0.6 5,102,375 + +0.4 5,102,375 + -0.4 5,102,375 + +0.6 5,102,375 + -0.0 5,102,376 - +0.0 5,102,376 - -0.1 5,102,376 - +0.3 5,102,376 - +1.6 5,102,376 - +0.3 5,102,376 - +0.2 5,102,376 - -0.9 5,102,376 - -0.5 5,102,376 - +0.3 5,102,376 - +0.8 5,102,376 - -0.4 5,102,376 - -1.4 5,102,376 - +0.2 5,102,376 - +0.7 5,102,376 - -0.8 5,102,376 - -1.5 5,102,377 + -0.0 5,102,377 + +0.0 5,102,377 + -0.0 5,102,377 + +0.6 5,102,377 + -0.4 5,102,377 + +0.7 5,102,377 + -0.8 5,102,377 + -1.4 5,102,378 - +1.2 5,102,378 - -1.5 5,102,378 - -0.3 5,102,378 - -0.1 5,102,378 - -0.0 5,102,378 - -0.1 5,102,378 - -1.0 5,102,378 - +0.6 5,102,378 - -1.8 5,102,378 - +0.2 5,102,378 - -0.1 5,102,378 - +0.5 5,102,378 - -1.6 5,102,378 - +1.5 5,102,378 - -0.6 5,102,378 - +0.8 5,102,378 - +0.3 5,102,395 - -1.3 5,102,395 - -1.4 5,102,415 + +1.0 5,102,416 - -1.0 5,102,416 - -1.1 5,102,419 + +1.0 5,102,419 + +0.1 5,102,420 - +0.7 5,102,420 - -0.1 5,102,420 - -1.0 5,102,420 - -0.2 5,102,420 - +0.0 5,102,420 - -0.6 5,102,443 + +0.8 5,102,444 - -1.3 5,102,678 + PfGW456L13_4573 0.23 -0.4 5,102,679 - PfGW456L13_4573 0.23 -1.4 5,102,679 - PfGW456L13_4573 0.23 -0.1 5,102,679 - PfGW456L13_4573 0.23 -0.6 5,102,945 + PfGW456L13_4573 0.58 -0.3 5,102,945 + PfGW456L13_4573 0.58 -0.3 5,102,946 - PfGW456L13_4573 0.58 -0.5 5,102,946 - PfGW456L13_4573 0.58 +0.0 5,102,946 - PfGW456L13_4573 0.58 -0.7 5,103,128 + PfGW456L13_4573 0.82 +0.1 5,103,128 + PfGW456L13_4573 0.82 +0.0 5,103,128 + PfGW456L13_4573 0.82 -0.9 5,103,128 + PfGW456L13_4573 0.82 -0.2 5,103,129 - PfGW456L13_4573 0.82 +0.3 5,103,129 - PfGW456L13_4573 0.82 -0.8 5,103,129 - PfGW456L13_4573 0.82 +0.7 5,103,129 - PfGW456L13_4573 0.82 +0.6 5,103,129 - PfGW456L13_4573 0.82 +0.9 5,103,129 - PfGW456L13_4573 0.82 +0.2 5,103,260 + +1.5 5,103,260 + -0.2 5,103,261 - -0.5 5,103,261 - +1.6 5,103,261 - -0.3 5,103,280 + -3.9 5,103,281 - -0.8 5,103,281 - -0.9 5,103,281 - +1.4 5,103,735 + PfGW456L13_4574 0.60 -1.4 5,103,735 + PfGW456L13_4574 0.60 -0.6 5,103,735 + PfGW456L13_4574 0.60 +0.6 5,103,736 - PfGW456L13_4574 0.60 -0.5 5,103,736 - PfGW456L13_4574 0.60 +0.1 5,103,805 + PfGW456L13_4574 0.69 -0.7 5,103,805 + PfGW456L13_4574 0.69 +0.4 5,103,806 - PfGW456L13_4574 0.69 -0.7 5,103,806 - PfGW456L13_4574 0.69 -2.3 5,104,064 + +0.1 5,104,077 - +0.3 5,104,077 - -0.9 5,104,077 - +1.0 5,104,077 - +1.0 5,104,138 + -0.2 5,104,139 - +0.5 5,104,178 + -0.0 5,104,178 + -0.1 5,104,179 - -2.0 5,104,179 - +0.7 5,104,190 + -0.2 5,104,190 + +1.6 5,104,190 + -0.6 5,104,190 + +0.2 5,104,220 + -1.2 5,104,221 - +0.4 5,104,221 - -1.0 5,104,253 + PfGW456L13_4575 0.13 -0.9 5,104,253 + PfGW456L13_4575 0.13 -0.4 5,104,253 + PfGW456L13_4575 0.13 -1.6 5,104,253 + PfGW456L13_4575 0.13 +0.3 5,104,253 + PfGW456L13_4575 0.13 +0.2 5,104,253 + PfGW456L13_4575 0.13 +0.9 5,104,254 - PfGW456L13_4575 0.13 -1.6 5,104,254 - PfGW456L13_4575 0.13 +0.3 5,104,254 - PfGW456L13_4575 0.13 +0.7 5,104,254 - PfGW456L13_4575 0.13 -0.6 5,104,254 - PfGW456L13_4575 0.13 +0.9 5,104,254 - PfGW456L13_4575 0.13 +0.2
Or see this region's nucleotide sequence