Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_319

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_318 and PfGW456L13_319 overlap by 48 nucleotidesPfGW456L13_319 and PfGW456L13_320 overlap by 11 nucleotides PfGW456L13_318 - Histidine transport protein (permease), at 372,253 to 373,659 _318 PfGW456L13_319 - hypothetical protein, at 373,612 to 373,779 _319 PfGW456L13_320 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 373,769 to 375,301 _320 Position (kb) 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.914 kb on + strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.915 kb on - strand, within PfGW456L13_318at 372.938 kb on - strand, within PfGW456L13_318at 373.012 kb on - strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.319 kb on + strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.320 kb on - strand, within PfGW456L13_318at 373.323 kb on + strand, within PfGW456L13_318at 373.323 kb on + strand, within PfGW456L13_318at 373.373 kb on + strand, within PfGW456L13_318at 373.373 kb on + strand, within PfGW456L13_318at 373.373 kb on + strand, within PfGW456L13_318at 373.374 kb on - strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.412 kb on + strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.413 kb on - strand, within PfGW456L13_318at 373.514 kb on + strand, within PfGW456L13_318at 373.514 kb on + strand, within PfGW456L13_318at 373.514 kb on + strand, within PfGW456L13_318at 373.565 kb on + strandat 373.565 kb on + strandat 373.565 kb on + strandat 373.565 kb on + strandat 373.566 kb on - strandat 373.566 kb on - strandat 373.611 kb on + strandat 373.611 kb on + strandat 373.611 kb on + strandat 373.612 kb on - strandat 373.612 kb on - strandat 373.671 kb on - strand, within PfGW456L13_319at 373.674 kb on + strand, within PfGW456L13_319at 373.674 kb on + strand, within PfGW456L13_319at 373.674 kb on + strand, within PfGW456L13_319at 373.674 kb on + strand, within PfGW456L13_319at 373.675 kb on - strand, within PfGW456L13_319at 373.675 kb on - strand, within PfGW456L13_319at 373.675 kb on - strand, within PfGW456L13_319at 373.675 kb on - strand, within PfGW456L13_319at 373.770 kb on + strandat 373.770 kb on + strandat 373.770 kb on + strandat 373.771 kb on - strandat 373.771 kb on - strandat 373.771 kb on - strandat 373.777 kb on + strandat 373.778 kb on - strandat 373.875 kb on + strandat 373.876 kb on - strandat 374.233 kb on + strand, within PfGW456L13_320at 374.234 kb on - strand, within PfGW456L13_320at 374.393 kb on + strand, within PfGW456L13_320at 374.471 kb on + strand, within PfGW456L13_320at 374.472 kb on - strand, within PfGW456L13_320at 374.472 kb on - strand, within PfGW456L13_320

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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372,914 + PfGW456L13_318 0.47 -0.2
372,914 + PfGW456L13_318 0.47 +0.6
372,914 + PfGW456L13_318 0.47 -0.1
372,914 + PfGW456L13_318 0.47 -0.2
372,914 + PfGW456L13_318 0.47 +0.6
372,914 + PfGW456L13_318 0.47 -0.2
372,915 - PfGW456L13_318 0.47 -0.0
372,915 - PfGW456L13_318 0.47 +0.3
372,915 - PfGW456L13_318 0.47 -0.2
372,938 - PfGW456L13_318 0.49 +1.3
373,012 - PfGW456L13_318 0.54 +0.5
373,319 + PfGW456L13_318 0.76 +0.0
373,319 + PfGW456L13_318 0.76 -0.7
373,319 + PfGW456L13_318 0.76 -0.5
373,319 + PfGW456L13_318 0.76 +0.1
373,319 + PfGW456L13_318 0.76 +0.2
373,319 + PfGW456L13_318 0.76 -1.3
373,319 + PfGW456L13_318 0.76 +0.8
373,319 + PfGW456L13_318 0.76 -0.5
373,319 + PfGW456L13_318 0.76 +0.9
373,319 + PfGW456L13_318 0.76 +1.3
373,319 + PfGW456L13_318 0.76 +0.8
373,319 + PfGW456L13_318 0.76 -0.1
373,319 + PfGW456L13_318 0.76 +0.0
373,320 - PfGW456L13_318 0.76 +0.1
373,320 - PfGW456L13_318 0.76 -0.7
373,320 - PfGW456L13_318 0.76 +0.4
373,320 - PfGW456L13_318 0.76 -1.1
373,320 - PfGW456L13_318 0.76 -0.2
373,320 - PfGW456L13_318 0.76 +0.5
373,320 - PfGW456L13_318 0.76 +0.2
373,320 - PfGW456L13_318 0.76 -2.9
373,320 - PfGW456L13_318 0.76 +0.4
373,320 - PfGW456L13_318 0.76 -0.3
373,320 - PfGW456L13_318 0.76 +0.2
373,323 + PfGW456L13_318 0.76 +0.8
373,323 + PfGW456L13_318 0.76 +1.7
373,373 + PfGW456L13_318 0.80 -0.9
373,373 + PfGW456L13_318 0.80 -0.2
373,373 + PfGW456L13_318 0.80 -0.4
373,374 - PfGW456L13_318 0.80 -0.2
373,412 + PfGW456L13_318 0.82 -0.6
373,412 + PfGW456L13_318 0.82 -0.6
373,412 + PfGW456L13_318 0.82 -0.1
373,412 + PfGW456L13_318 0.82 +0.1
373,412 + PfGW456L13_318 0.82 +0.4
373,412 + PfGW456L13_318 0.82 -0.1
373,413 - PfGW456L13_318 0.82 -0.4
373,413 - PfGW456L13_318 0.82 -0.1
373,413 - PfGW456L13_318 0.82 +1.1
373,413 - PfGW456L13_318 0.82 -0.9
373,413 - PfGW456L13_318 0.82 -1.4
373,514 + PfGW456L13_318 0.90 +0.6
373,514 + PfGW456L13_318 0.90 -0.4
373,514 + PfGW456L13_318 0.90 -0.7
373,565 + +0.4
373,565 + +0.2
373,565 + +1.5
373,565 + +0.7
373,566 - +0.1
373,566 - -0.2
373,611 + -0.3
373,611 + +0.3
373,611 + -0.1
373,612 - +0.6
373,612 - +0.5
373,671 - PfGW456L13_319 0.35 -1.0
373,674 + PfGW456L13_319 0.37 +0.8
373,674 + PfGW456L13_319 0.37 +0.9
373,674 + PfGW456L13_319 0.37 -0.1
373,674 + PfGW456L13_319 0.37 -1.0
373,675 - PfGW456L13_319 0.38 -0.2
373,675 - PfGW456L13_319 0.38 +0.2
373,675 - PfGW456L13_319 0.38 -1.4
373,675 - PfGW456L13_319 0.38 -1.2
373,770 + -0.1
373,770 + -0.0
373,770 + -0.0
373,771 - +0.4
373,771 - -0.7
373,771 - +0.1
373,777 + +1.1
373,778 - -0.4
373,875 + +0.5
373,876 - -0.6
374,233 + PfGW456L13_320 0.30 -0.1
374,234 - PfGW456L13_320 0.30 -0.2
374,393 + PfGW456L13_320 0.41 -1.3
374,471 + PfGW456L13_320 0.46 +0.5
374,472 - PfGW456L13_320 0.46 -0.6
374,472 - PfGW456L13_320 0.46 +0.9

Or see this region's nucleotide sequence