Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15980

Experiment: D-Glucose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS15970 and PFLU_RS15975 are separated by 57 nucleotidesPFLU_RS15975 and PFLU_RS15980 are separated by 85 nucleotidesPFLU_RS15980 and PFLU_RS15985 overlap by 8 nucleotidesPFLU_RS15985 and PFLU_RS15990 overlap by 8 nucleotides PFLU_RS15970: PFLU_RS15970 - DUF861 domain-containing protein, at 3,628,540 to 3,628,905 _RS15970 PFLU_RS15975: PFLU_RS15975 - LuxR family transcriptional regulator, at 3,628,963 to 3,629,622 _RS15975 PFLU_RS15980: PFLU_RS15980 - molybdenum cofactor biosynthesis protein F, at 3,629,708 to 3,630,529 _RS15980 PFLU_RS15985: PFLU_RS15985 - SDR family oxidoreductase, at 3,630,522 to 3,631,322 _RS15985 PFLU_RS15990: PFLU_RS15990 - SDR family oxidoreductase, at 3,631,315 to 3,632,085 _RS15990 Position (kb) 3629 3630 3631Strain fitness (log2 ratio) -3 -2 -1 0 1at 3628.807 kb on + strand, within PFLU_RS15970at 3628.888 kb on + strandat 3629.047 kb on + strand, within PFLU_RS15975at 3629.047 kb on + strand, within PFLU_RS15975at 3629.047 kb on + strand, within PFLU_RS15975at 3629.047 kb on + strand, within PFLU_RS15975at 3629.048 kb on - strand, within PFLU_RS15975at 3629.048 kb on - strand, within PFLU_RS15975at 3629.119 kb on + strand, within PFLU_RS15975at 3629.120 kb on - strand, within PFLU_RS15975at 3629.120 kb on - strand, within PFLU_RS15975at 3629.942 kb on + strand, within PFLU_RS15980at 3630.215 kb on + strand, within PFLU_RS15980at 3630.234 kb on - strand, within PFLU_RS15980at 3630.245 kb on + strand, within PFLU_RS15980at 3630.245 kb on + strand, within PFLU_RS15980at 3630.246 kb on - strand, within PFLU_RS15980at 3630.246 kb on - strand, within PFLU_RS15980at 3630.263 kb on + strand, within PFLU_RS15980at 3630.263 kb on + strand, within PFLU_RS15980at 3630.263 kb on + strand, within PFLU_RS15980at 3630.264 kb on - strand, within PFLU_RS15980at 3630.264 kb on - strand, within PFLU_RS15980at 3630.264 kb on - strand, within PFLU_RS15980at 3630.323 kb on + strand, within PFLU_RS15980at 3630.326 kb on + strand, within PFLU_RS15980at 3630.326 kb on + strand, within PFLU_RS15980at 3630.327 kb on - strand, within PFLU_RS15980at 3630.327 kb on - strand, within PFLU_RS15980at 3630.347 kb on + strand, within PFLU_RS15980at 3630.347 kb on + strand, within PFLU_RS15980at 3630.347 kb on + strand, within PFLU_RS15980at 3630.348 kb on - strand, within PFLU_RS15980at 3630.440 kb on + strand, within PFLU_RS15980at 3630.536 kb on + strandat 3630.536 kb on + strandat 3630.858 kb on + strand, within PFLU_RS15985at 3630.859 kb on - strand, within PFLU_RS15985at 3631.064 kb on + strand, within PFLU_RS15985at 3631.107 kb on + strand, within PFLU_RS15985at 3631.108 kb on - strand, within PFLU_RS15985at 3631.132 kb on - strand, within PFLU_RS15985at 3631.293 kb on + strandat 3631.294 kb on - strandat 3631.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); with MOPS
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3,628,807 + PFLU_RS15970 0.73 -1.8
3,628,888 + -0.9
3,629,047 + PFLU_RS15975 0.13 +0.2
3,629,047 + PFLU_RS15975 0.13 -0.4
3,629,047 + PFLU_RS15975 0.13 +0.4
3,629,047 + PFLU_RS15975 0.13 +1.1
3,629,048 - PFLU_RS15975 0.13 -0.2
3,629,048 - PFLU_RS15975 0.13 +0.1
3,629,119 + PFLU_RS15975 0.24 -0.5
3,629,120 - PFLU_RS15975 0.24 -0.3
3,629,120 - PFLU_RS15975 0.24 +0.3
3,629,942 + PFLU_RS15980 0.28 -0.3
3,630,215 + PFLU_RS15980 0.62 +0.4
3,630,234 - PFLU_RS15980 0.64 +1.0
3,630,245 + PFLU_RS15980 0.65 -1.0
3,630,245 + PFLU_RS15980 0.65 +0.0
3,630,246 - PFLU_RS15980 0.65 +1.2
3,630,246 - PFLU_RS15980 0.65 -0.1
3,630,263 + PFLU_RS15980 0.68 +0.2
3,630,263 + PFLU_RS15980 0.68 +0.8
3,630,263 + PFLU_RS15980 0.68 -0.9
3,630,264 - PFLU_RS15980 0.68 +0.0
3,630,264 - PFLU_RS15980 0.68 -1.2
3,630,264 - PFLU_RS15980 0.68 -1.8
3,630,323 + PFLU_RS15980 0.75 +0.0
3,630,326 + PFLU_RS15980 0.75 -0.8
3,630,326 + PFLU_RS15980 0.75 -1.0
3,630,327 - PFLU_RS15980 0.75 +0.8
3,630,327 - PFLU_RS15980 0.75 +0.1
3,630,347 + PFLU_RS15980 0.78 +0.3
3,630,347 + PFLU_RS15980 0.78 +1.7
3,630,347 + PFLU_RS15980 0.78 -0.4
3,630,348 - PFLU_RS15980 0.78 -0.0
3,630,440 + PFLU_RS15980 0.89 +0.1
3,630,536 + -0.8
3,630,536 + -3.0
3,630,858 + PFLU_RS15985 0.42 -1.4
3,630,859 - PFLU_RS15985 0.42 +0.2
3,631,064 + PFLU_RS15985 0.68 -1.1
3,631,107 + PFLU_RS15985 0.73 -0.0
3,631,108 - PFLU_RS15985 0.73 -0.3
3,631,132 - PFLU_RS15985 0.76 -0.6
3,631,293 + -0.2
3,631,294 - -0.1
3,631,294 - -0.7

Or see this region's nucleotide sequence