Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12665

Experiment: D-Glucose (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C); with MOPS
2,857,937	+				+1.4
2,857,938	-				-2.9
2,857,938	-				-0.6
2,857,978	+				+1.0
2,857,979	-				-0.8
2,857,979	-				+1.7
2,857,981	+				+0.6
2,857,981	+				+1.2
2,857,981	+				+0.1
2,857,981	+				-0.9
2,857,981	+				-0.9
2,857,982	-				-1.6
2,857,982	-				+0.4
2,857,982	-				+1.2
2,858,024	+				+1.2
2,858,024	+				+1.2
2,858,024	+				+0.1
2,858,024	+				+1.0
2,858,025	-				-0.3
2,858,025	-				-0.8
2,858,025	-				-1.2
2,858,025	-				+0.3
2,858,066	+				+0.1
2,858,067	-				+0.9
2,858,156	+				+1.3
2,858,156	+				+1.4
2,858,156	+				+0.4
2,858,193	-				+1.6
2,858,193	-				-0.4
2,858,312	+				+0.2
2,858,312	+				+1.4
2,858,312	+				-1.7
2,858,332	+				-1.0
2,858,391	+		PFLU_RS12660	0.19	-2.0
2,858,391	+		PFLU_RS12660	0.19	-1.2
2,858,391	+		PFLU_RS12660	0.19	-1.7
2,858,391	+		PFLU_RS12660	0.19	+0.2
2,858,392	-		PFLU_RS12660	0.19	-0.8
2,858,421	+		PFLU_RS12660	0.25	-2.0
2,858,421	+		PFLU_RS12660	0.25	-1.4
2,858,421	+		PFLU_RS12660	0.25	-0.3
2,858,421	+		PFLU_RS12660	0.25	-0.1
2,858,421	+		PFLU_RS12660	0.25	+0.3
2,858,421	+		PFLU_RS12660	0.25	-0.2
2,858,421	+		PFLU_RS12660	0.25	-2.6
2,858,421	+		PFLU_RS12660	0.25	-2.0
2,858,422	-		PFLU_RS12660	0.26	+0.8
2,858,422	-		PFLU_RS12660	0.26	-0.8
2,858,422	-		PFLU_RS12660	0.26	-2.0
2,858,422	-		PFLU_RS12660	0.26	-0.6
2,858,422	-		PFLU_RS12660	0.26	-2.2
2,858,590	-		PFLU_RS12660	0.61	-1.2
2,858,656	+		PFLU_RS12660	0.75	+1.2
2,858,769	+				+0.4
2,858,812	+				+0.7
2,858,813	-				-0.7
2,858,815	+				+1.4
2,858,816	-				-0.3
2,858,816	-				-1.2
2,858,816	-				+0.2
2,858,831	+				+0.3
2,858,832	-				-0.8
2,858,832	-				-2.9
2,858,854	+				-1.2
2,858,854	+				+1.8
2,859,213	-		PFLU_RS12665	0.30	-0.4
2,859,265	+		PFLU_RS12665	0.35	+1.1
2,859,265	+		PFLU_RS12665	0.35	-2.1
2,859,265	+		PFLU_RS12665	0.35	+0.9
2,859,266	-		PFLU_RS12665	0.35	+0.1
2,859,343	+		PFLU_RS12665	0.43	-2.2
2,859,343	+		PFLU_RS12665	0.43	+0.2
2,859,343	+		PFLU_RS12665	0.43	+0.7
2,859,344	-		PFLU_RS12665	0.43	-1.4
2,859,344	-		PFLU_RS12665	0.43	-1.4
2,859,344	-		PFLU_RS12665	0.43	-0.3
2,859,344	-		PFLU_RS12665	0.43	+0.0
2,859,344	-		PFLU_RS12665	0.43	+0.8
2,859,466	+		PFLU_RS12665	0.55	-0.1
2,859,466	+		PFLU_RS12665	0.55	+1.2
2,859,466	+		PFLU_RS12665	0.55	+0.5
2,859,466	+		PFLU_RS12665	0.55	-0.6
2,859,466	+		PFLU_RS12665	0.55	-1.8
2,859,466	+		PFLU_RS12665	0.55	+0.7
2,859,466	+		PFLU_RS12665	0.55	-1.0
2,859,466	+		PFLU_RS12665	0.55	+0.5
2,859,466	+		PFLU_RS12665	0.55	+1.1
2,859,467	-		PFLU_RS12665	0.55	+0.8
2,859,467	-		PFLU_RS12665	0.55	+0.4
2,859,467	-		PFLU_RS12665	0.55	-0.3
2,859,467	-		PFLU_RS12665	0.55	+0.5
2,859,467	-		PFLU_RS12665	0.55	+0.1
2,859,467	-		PFLU_RS12665	0.55	+1.4
2,859,467	-		PFLU_RS12665	0.55	+1.2
2,859,467	-		PFLU_RS12665	0.55	-0.4
2,859,467	-		PFLU_RS12665	0.55	+0.2
2,859,467	-		PFLU_RS12665	0.55	-0.6
2,859,550	+		PFLU_RS12665	0.63	+1.4
2,859,550	+		PFLU_RS12665	0.63	+0.1
2,859,551	-		PFLU_RS12665	0.64	-0.4
2,859,551	-		PFLU_RS12665	0.64	+0.2
2,859,553	+		PFLU_RS12665	0.64	+0.9
2,859,554	-		PFLU_RS12665	0.64	-0.9
2,859,583	+		PFLU_RS12665	0.67	-0.5
2,859,583	+		PFLU_RS12665	0.67	+0.3
2,859,583	+		PFLU_RS12665	0.67	-0.1
2,859,583	+		PFLU_RS12665	0.67	+0.3
2,859,584	-		PFLU_RS12665	0.67	-0.7
2,859,584	-		PFLU_RS12665	0.67	+1.1
2,859,584	-		PFLU_RS12665	0.67	-2.3
2,859,584	-		PFLU_RS12665	0.67	+0.9
2,859,584	-		PFLU_RS12665	0.67	+1.4
2,859,584	-		PFLU_RS12665	0.67	+0.2
2,859,651	+		PFLU_RS12665	0.73	-1.3
2,859,783	+		PFLU_RS12665	0.86	-0.4
2,859,919	+				+2.2
2,859,919	+				+0.5
2,859,970	-				-1.2
2,860,060	+				+0.8
2,860,061	-				-0.3
2,860,061	-				+0.2
2,860,108	+				+1.2
2,860,108	+				+0.5
2,860,108	+				+1.3
2,860,108	+				+0.2
2,860,108	+				+1.4
2,860,109	-				-1.4
2,860,109	-				+1.4
2,860,109	-				-0.8
2,860,141	+				+0.9
2,860,141	+				+0.8
2,860,141	+				+1.0
2,860,141	+				+1.6
2,860,142	-				-2.6
2,860,142	-				-1.8
2,860,142	-				-0.6
2,860,142	-				+0.3
2,860,142	-				+0.5
2,860,142	-				+0.2
2,860,142	-				-1.6
2,860,142	-				-3.2
2,860,142	-				+0.9
2,860,142	-				+1.2
2,860,199	+				+1.0
2,860,199	+				+0.6
2,860,199	+				+1.3
2,860,199	+				+0.7
2,860,199	+				-0.3
2,860,200	-				-0.8
2,860,200	-				-2.8
2,860,200	-				+0.9
2,860,200	-				+1.7
2,860,200	-				-0.3
2,860,200	-				-1.4
2,860,202	-				+0.5
2,860,228	+				+0.5
2,860,228	+				-1.3
2,860,229	-				-0.4
2,860,229	-				+0.2
2,860,279	+		PFLU_RS12670	0.10	+1.2
2,860,279	+		PFLU_RS12670	0.10	-1.3
2,860,321	+		PFLU_RS12670	0.12	-0.1
2,860,321	+		PFLU_RS12670	0.12	+1.2
2,860,423	+		PFLU_RS12670	0.17	+0.6
2,860,423	+		PFLU_RS12670	0.17	-0.6
2,860,585	+		PFLU_RS12670	0.25	+0.2
2,860,622	-		PFLU_RS12670	0.26	+0.9
2,860,631	+		PFLU_RS12670	0.27	+1.2
2,860,632	-		PFLU_RS12670	0.27	-1.4
2,860,632	-		PFLU_RS12670	0.27	+1.2
2,860,711	+		PFLU_RS12670	0.31	-0.7
2,860,711	+		PFLU_RS12670	0.31	+0.4
2,860,712	-		PFLU_RS12670	0.31	+0.7
2,860,720	+		PFLU_RS12670	0.31	+0.5
2,860,720	+		PFLU_RS12670	0.31	-0.4
2,860,720	+		PFLU_RS12670	0.31	-0.5
2,860,720	+		PFLU_RS12670	0.31	+0.5
2,860,720	+		PFLU_RS12670	0.31	-0.2
2,860,720	+		PFLU_RS12670	0.31	+0.9
2,860,720	+		PFLU_RS12670	0.31	+0.2
2,860,720	+		PFLU_RS12670	0.31	-0.2
2,860,720	+		PFLU_RS12670	0.31	+0.9
2,860,720	+		PFLU_RS12670	0.31	-0.4
2,860,721	-		PFLU_RS12670	0.31	-0.1
2,860,721	-		PFLU_RS12670	0.31	+0.6
2,860,721	-		PFLU_RS12670	0.31	-0.2
2,860,721	-		PFLU_RS12670	0.31	+1.1
2,860,721	-		PFLU_RS12670	0.31	-1.8
2,860,721	-		PFLU_RS12670	0.31	+0.6
2,860,721	-		PFLU_RS12670	0.31	+0.8
2,860,721	-		PFLU_RS12670	0.31	+1.3
2,860,747	+		PFLU_RS12670	0.32	-0.5
2,860,748	-		PFLU_RS12670	0.32	-1.0
2,860,748	-		PFLU_RS12670	0.32	-0.0
2,860,884	-		PFLU_RS12670	0.39	-0.4
2,860,909	-		PFLU_RS12670	0.40	+0.5
2,860,914	+		PFLU_RS12670	0.40	-0.3
2,860,915	-		PFLU_RS12670	0.40	+1.2