Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03380

Experiment: D-Glucose (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03375 and PFLU_RS03380 overlap by 4 nucleotidesPFLU_RS03380 and PFLU_RS03385 overlap by 11 nucleotides PFLU_RS03375: PFLU_RS03375 - chromosome segregation ATPase, at 777,645 to 780,485 _RS03375 PFLU_RS03380: PFLU_RS03380 - chromosome partitioning protein, at 780,482 to 781,189 _RS03380 PFLU_RS03385: PFLU_RS03385 - hypothetical protein, at 781,179 to 782,456 _RS03385 Position (kb) 780 781 782Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 779.644 kb on + strand, within PFLU_RS03375at 779.776 kb on + strand, within PFLU_RS03375at 779.776 kb on + strand, within PFLU_RS03375at 779.777 kb on - strand, within PFLU_RS03375at 779.777 kb on - strand, within PFLU_RS03375at 779.830 kb on + strand, within PFLU_RS03375at 779.830 kb on + strand, within PFLU_RS03375at 779.830 kb on + strand, within PFLU_RS03375at 779.830 kb on + strand, within PFLU_RS03375at 779.830 kb on + strand, within PFLU_RS03375at 780.008 kb on + strand, within PFLU_RS03375at 780.008 kb on + strand, within PFLU_RS03375at 780.008 kb on + strand, within PFLU_RS03375at 780.008 kb on + strand, within PFLU_RS03375at 780.008 kb on + strand, within PFLU_RS03375at 780.009 kb on - strand, within PFLU_RS03375at 780.009 kb on - strand, within PFLU_RS03375at 780.009 kb on - strand, within PFLU_RS03375at 780.055 kb on + strand, within PFLU_RS03375at 780.055 kb on + strand, within PFLU_RS03375at 780.056 kb on - strand, within PFLU_RS03375at 780.127 kb on + strand, within PFLU_RS03375at 780.127 kb on + strand, within PFLU_RS03375at 780.127 kb on + strand, within PFLU_RS03375at 780.154 kb on + strand, within PFLU_RS03375at 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.250 kb on + strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.251 kb on - strandat 780.271 kb on + strandat 780.271 kb on + strandat 780.272 kb on - strandat 780.272 kb on - strandat 780.298 kb on + strandat 780.298 kb on + strandat 780.298 kb on + strandat 780.298 kb on + strandat 780.298 kb on + strandat 780.299 kb on - strandat 780.299 kb on - strandat 780.369 kb on - strandat 780.388 kb on + strandat 780.388 kb on + strandat 780.388 kb on + strandat 780.388 kb on + strandat 780.447 kb on + strandat 780.723 kb on + strand, within PFLU_RS03380at 780.723 kb on + strand, within PFLU_RS03380at 780.723 kb on + strand, within PFLU_RS03380at 780.723 kb on + strand, within PFLU_RS03380at 780.831 kb on + strand, within PFLU_RS03380at 781.005 kb on + strand, within PFLU_RS03380at 781.005 kb on + strand, within PFLU_RS03380at 781.005 kb on + strand, within PFLU_RS03380at 781.006 kb on - strand, within PFLU_RS03380at 781.006 kb on - strand, within PFLU_RS03380at 781.006 kb on - strand, within PFLU_RS03380at 781.006 kb on - strand, within PFLU_RS03380at 781.008 kb on + strand, within PFLU_RS03380at 781.008 kb on + strand, within PFLU_RS03380at 781.008 kb on + strand, within PFLU_RS03380at 781.095 kb on + strand, within PFLU_RS03380at 781.095 kb on + strand, within PFLU_RS03380at 781.096 kb on - strand, within PFLU_RS03380at 781.126 kb on - strandat 781.189 kb on + strandat 781.189 kb on + strandat 781.189 kb on + strandat 781.190 kb on - strandat 781.342 kb on + strand, within PFLU_RS03385at 781.343 kb on - strand, within PFLU_RS03385at 781.343 kb on - strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.534 kb on + strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.535 kb on - strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.540 kb on + strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.541 kb on - strand, within PFLU_RS03385at 781.631 kb on + strand, within PFLU_RS03385at 781.631 kb on + strand, within PFLU_RS03385at 781.631 kb on + strand, within PFLU_RS03385at 781.632 kb on - strand, within PFLU_RS03385at 781.632 kb on - strand, within PFLU_RS03385at 781.632 kb on - strand, within PFLU_RS03385at 781.679 kb on + strand, within PFLU_RS03385at 781.679 kb on + strand, within PFLU_RS03385at 781.679 kb on + strand, within PFLU_RS03385at 781.679 kb on + strand, within PFLU_RS03385at 781.680 kb on - strand, within PFLU_RS03385at 781.680 kb on - strand, within PFLU_RS03385at 781.680 kb on - strand, within PFLU_RS03385at 781.918 kb on + strand, within PFLU_RS03385at 781.918 kb on + strand, within PFLU_RS03385at 781.918 kb on + strand, within PFLU_RS03385at 781.918 kb on + strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 781.919 kb on - strand, within PFLU_RS03385at 782.120 kb on + strand, within PFLU_RS03385at 782.120 kb on + strand, within PFLU_RS03385at 782.121 kb on - strand, within PFLU_RS03385at 782.122 kb on + strand, within PFLU_RS03385at 782.122 kb on + strand, within PFLU_RS03385at 782.122 kb on + strand, within PFLU_RS03385at 782.152 kb on + strand, within PFLU_RS03385at 782.152 kb on + strand, within PFLU_RS03385at 782.152 kb on + strand, within PFLU_RS03385at 782.153 kb on - strand, within PFLU_RS03385at 782.153 kb on - strand, within PFLU_RS03385

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C); with MOPS
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779,644 + PFLU_RS03375 0.70 -1.0
779,776 + PFLU_RS03375 0.75 +0.7
779,776 + PFLU_RS03375 0.75 +0.2
779,777 - PFLU_RS03375 0.75 +1.2
779,777 - PFLU_RS03375 0.75 +0.0
779,830 + PFLU_RS03375 0.77 -0.3
779,830 + PFLU_RS03375 0.77 -0.8
779,830 + PFLU_RS03375 0.77 -0.3
779,830 + PFLU_RS03375 0.77 +0.6
779,830 + PFLU_RS03375 0.77 -1.8
780,008 + PFLU_RS03375 0.83 +0.8
780,008 + PFLU_RS03375 0.83 +1.0
780,008 + PFLU_RS03375 0.83 +0.2
780,008 + PFLU_RS03375 0.83 -1.0
780,008 + PFLU_RS03375 0.83 +0.6
780,009 - PFLU_RS03375 0.83 +0.1
780,009 - PFLU_RS03375 0.83 +0.6
780,009 - PFLU_RS03375 0.83 +0.5
780,055 + PFLU_RS03375 0.85 +1.1
780,055 + PFLU_RS03375 0.85 -0.4
780,056 - PFLU_RS03375 0.85 -0.6
780,127 + PFLU_RS03375 0.87 -0.4
780,127 + PFLU_RS03375 0.87 -0.2
780,127 + PFLU_RS03375 0.87 -1.0
780,154 + PFLU_RS03375 0.88 +0.7
780,250 + -1.5
780,250 + -0.8
780,250 + -2.8
780,250 + -2.0
780,250 + -0.1
780,250 + +0.4
780,250 + +1.0
780,250 + +0.2
780,251 - +1.0
780,251 - -1.4
780,251 - +0.3
780,251 - +0.0
780,251 - +1.7
780,251 - +0.2
780,251 - -0.4
780,251 - -0.6
780,271 + -1.6
780,271 + -0.2
780,272 - +0.6
780,272 - +0.8
780,298 + -0.9
780,298 + +0.7
780,298 + +0.4
780,298 + -0.4
780,298 + -1.7
780,299 - -0.0
780,299 - +0.3
780,369 - +0.3
780,388 + +0.9
780,388 + -0.8
780,388 + -0.1
780,388 + +0.3
780,447 + -0.2
780,723 + PFLU_RS03380 0.34 +1.6
780,723 + PFLU_RS03380 0.34 +0.5
780,723 + PFLU_RS03380 0.34 -1.0
780,723 + PFLU_RS03380 0.34 -0.3
780,831 + PFLU_RS03380 0.49 -0.7
781,005 + PFLU_RS03380 0.74 +0.2
781,005 + PFLU_RS03380 0.74 +0.8
781,005 + PFLU_RS03380 0.74 +0.5
781,006 - PFLU_RS03380 0.74 -2.0
781,006 - PFLU_RS03380 0.74 -0.1
781,006 - PFLU_RS03380 0.74 +0.9
781,006 - PFLU_RS03380 0.74 -0.5
781,008 + PFLU_RS03380 0.74 +0.5
781,008 + PFLU_RS03380 0.74 +0.1
781,008 + PFLU_RS03380 0.74 -2.4
781,095 + PFLU_RS03380 0.87 +0.2
781,095 + PFLU_RS03380 0.87 -1.5
781,096 - PFLU_RS03380 0.87 -2.0
781,126 - -0.8
781,189 + +1.3
781,189 + -1.0
781,189 + +0.6
781,190 - +0.8
781,342 + PFLU_RS03385 0.13 +0.6
781,343 - PFLU_RS03385 0.13 +0.8
781,343 - PFLU_RS03385 0.13 +0.8
781,534 + PFLU_RS03385 0.28 -1.3
781,534 + PFLU_RS03385 0.28 -0.7
781,534 + PFLU_RS03385 0.28 -0.6
781,534 + PFLU_RS03385 0.28 -1.3
781,534 + PFLU_RS03385 0.28 +0.5
781,534 + PFLU_RS03385 0.28 +0.9
781,534 + PFLU_RS03385 0.28 +1.3
781,534 + PFLU_RS03385 0.28 -0.8
781,534 + PFLU_RS03385 0.28 +0.4
781,535 - PFLU_RS03385 0.28 -2.1
781,535 - PFLU_RS03385 0.28 +0.1
781,535 - PFLU_RS03385 0.28 +1.2
781,535 - PFLU_RS03385 0.28 +0.3
781,535 - PFLU_RS03385 0.28 +0.3
781,535 - PFLU_RS03385 0.28 +0.6
781,535 - PFLU_RS03385 0.28 +2.7
781,540 + PFLU_RS03385 0.28 +1.9
781,540 + PFLU_RS03385 0.28 -0.8
781,540 + PFLU_RS03385 0.28 -1.6
781,540 + PFLU_RS03385 0.28 -0.8
781,540 + PFLU_RS03385 0.28 +0.6
781,540 + PFLU_RS03385 0.28 -0.5
781,540 + PFLU_RS03385 0.28 -0.8
781,540 + PFLU_RS03385 0.28 -0.1
781,540 + PFLU_RS03385 0.28 +0.1
781,540 + PFLU_RS03385 0.28 -0.8
781,540 + PFLU_RS03385 0.28 +0.2
781,540 + PFLU_RS03385 0.28 -0.2
781,541 - PFLU_RS03385 0.28 -1.7
781,541 - PFLU_RS03385 0.28 -0.8
781,541 - PFLU_RS03385 0.28 +0.2
781,541 - PFLU_RS03385 0.28 +0.1
781,541 - PFLU_RS03385 0.28 +0.8
781,541 - PFLU_RS03385 0.28 +1.0
781,541 - PFLU_RS03385 0.28 +1.1
781,631 + PFLU_RS03385 0.35 +0.3
781,631 + PFLU_RS03385 0.35 +0.2
781,631 + PFLU_RS03385 0.35 +0.3
781,632 - PFLU_RS03385 0.35 +0.2
781,632 - PFLU_RS03385 0.35 -2.7
781,632 - PFLU_RS03385 0.35 -0.6
781,679 + PFLU_RS03385 0.39 +1.2
781,679 + PFLU_RS03385 0.39 -0.4
781,679 + PFLU_RS03385 0.39 +0.0
781,679 + PFLU_RS03385 0.39 +0.2
781,680 - PFLU_RS03385 0.39 -0.1
781,680 - PFLU_RS03385 0.39 -0.1
781,680 - PFLU_RS03385 0.39 +0.4
781,918 + PFLU_RS03385 0.58 +0.7
781,918 + PFLU_RS03385 0.58 -0.2
781,918 + PFLU_RS03385 0.58 -1.2
781,918 + PFLU_RS03385 0.58 +0.7
781,919 - PFLU_RS03385 0.58 +0.3
781,919 - PFLU_RS03385 0.58 +0.9
781,919 - PFLU_RS03385 0.58 -0.1
781,919 - PFLU_RS03385 0.58 +1.5
781,919 - PFLU_RS03385 0.58 +0.4
781,919 - PFLU_RS03385 0.58 +0.2
781,919 - PFLU_RS03385 0.58 +0.4
782,120 + PFLU_RS03385 0.74 +0.5
782,120 + PFLU_RS03385 0.74 -0.8
782,121 - PFLU_RS03385 0.74 -0.1
782,122 + PFLU_RS03385 0.74 +0.9
782,122 + PFLU_RS03385 0.74 +1.1
782,122 + PFLU_RS03385 0.74 +0.9
782,152 + PFLU_RS03385 0.76 -0.3
782,152 + PFLU_RS03385 0.76 +1.0
782,152 + PFLU_RS03385 0.76 -0.0
782,153 - PFLU_RS03385 0.76 -0.3
782,153 - PFLU_RS03385 0.76 -0.5

Or see this region's nucleotide sequence