Strain Fitness in Pseudomonas sp. S08-1 around OH686_21395

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21375 and OH686_21380 are separated by 133 nucleotidesOH686_21380 and OH686_21385 overlap by 13 nucleotidesOH686_21385 and OH686_21390 are separated by 82 nucleotidesOH686_21390 and OH686_21395 overlap by 4 nucleotidesOH686_21395 and OH686_21400 overlap by 4 nucleotidesOH686_21400 and OH686_21405 overlap by 4 nucleotides OH686_21375: OH686_21375 - hypothetical protein, at 4,376,956 to 4,377,225 _21375 OH686_21380: OH686_21380 - hypothetical protein, at 4,377,359 to 4,377,610 _21380 OH686_21385: OH686_21385 - hypothetical protein, at 4,377,598 to 4,377,918 _21385 OH686_21390: OH686_21390 - hypothetical protein, at 4,378,001 to 4,378,228 _21390 OH686_21395: OH686_21395 - hypothetical protein, at 4,378,225 to 4,378,737 _21395 OH686_21400: OH686_21400 - Phage protein, at 4,378,734 to 4,379,420 _21400 OH686_21405: OH686_21405 - hypothetical protein, at 4,379,417 to 4,379,839 _21405 Position (kb) 4378 4379Strain fitness (log2 ratio) -2 -1 0 1 2at 4377.254 kb on + strandat 4377.254 kb on + strandat 4377.254 kb on + strandat 4377.254 kb on + strandat 4377.345 kb on + strandat 4377.345 kb on + strandat 4377.345 kb on + strandat 4377.360 kb on + strandat 4377.394 kb on + strand, within OH686_21380at 4377.394 kb on + strand, within OH686_21380at 4377.394 kb on + strand, within OH686_21380at 4377.394 kb on + strand, within OH686_21380at 4377.438 kb on + strand, within OH686_21380at 4377.507 kb on + strand, within OH686_21380at 4377.507 kb on + strand, within OH686_21380at 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.610 kb on + strandat 4377.611 kb on - strandat 4377.611 kb on - strandat 4377.611 kb on - strandat 4377.611 kb on - strandat 4377.677 kb on + strand, within OH686_21385at 4377.677 kb on + strand, within OH686_21385at 4377.677 kb on + strand, within OH686_21385at 4377.677 kb on + strand, within OH686_21385at 4377.677 kb on + strand, within OH686_21385at 4377.677 kb on + strand, within OH686_21385at 4377.677 kb on + strand, within OH686_21385at 4377.678 kb on - strand, within OH686_21385at 4377.678 kb on - strand, within OH686_21385at 4377.718 kb on + strand, within OH686_21385at 4377.718 kb on + strand, within OH686_21385at 4377.719 kb on - strand, within OH686_21385at 4377.719 kb on - strand, within OH686_21385at 4377.719 kb on - strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.770 kb on + strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.771 kb on - strand, within OH686_21385at 4377.821 kb on + strand, within OH686_21385at 4377.821 kb on + strand, within OH686_21385at 4377.821 kb on + strand, within OH686_21385at 4377.821 kb on + strand, within OH686_21385at 4377.821 kb on + strand, within OH686_21385at 4377.822 kb on - strand, within OH686_21385at 4377.822 kb on - strand, within OH686_21385at 4377.822 kb on - strand, within OH686_21385at 4377.822 kb on - strand, within OH686_21385at 4377.822 kb on - strand, within OH686_21385at 4377.866 kb on + strand, within OH686_21385at 4377.866 kb on + strand, within OH686_21385at 4377.866 kb on + strand, within OH686_21385at 4377.866 kb on + strand, within OH686_21385at 4377.867 kb on - strand, within OH686_21385at 4377.872 kb on + strand, within OH686_21385at 4377.872 kb on + strand, within OH686_21385at 4377.872 kb on + strand, within OH686_21385at 4377.872 kb on + strand, within OH686_21385at 4377.872 kb on + strand, within OH686_21385at 4377.872 kb on + strand, within OH686_21385at 4377.873 kb on - strand, within OH686_21385at 4377.873 kb on - strand, within OH686_21385at 4377.873 kb on - strand, within OH686_21385at 4377.873 kb on - strand, within OH686_21385at 4377.873 kb on - strand, within OH686_21385at 4377.873 kb on - strand, within OH686_21385at 4377.873 kb on - strand, within OH686_21385at 4377.905 kb on + strandat 4377.905 kb on + strandat 4377.905 kb on + strandat 4377.905 kb on + strandat 4377.905 kb on + strandat 4377.905 kb on + strandat 4377.906 kb on - strandat 4377.906 kb on - strandat 4377.906 kb on - strandat 4377.906 kb on - strandat 4377.906 kb on - strandat 4377.906 kb on - strandat 4377.906 kb on - strandat 4377.988 kb on + strandat 4377.988 kb on + strandat 4377.988 kb on + strandat 4377.988 kb on + strandat 4378.164 kb on + strand, within OH686_21390at 4378.631 kb on + strand, within OH686_21395at 4378.631 kb on + strand, within OH686_21395at 4378.631 kb on + strand, within OH686_21395at 4378.631 kb on + strand, within OH686_21395at 4378.632 kb on - strand, within OH686_21395at 4378.632 kb on - strand, within OH686_21395at 4378.692 kb on + strandat 4378.692 kb on + strandat 4378.715 kb on + strandat 4378.715 kb on + strandat 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.879 kb on + strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.880 kb on - strand, within OH686_21400at 4378.906 kb on + strand, within OH686_21400at 4378.906 kb on + strand, within OH686_21400at 4378.906 kb on + strand, within OH686_21400at 4378.906 kb on + strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4378.907 kb on - strand, within OH686_21400at 4379.089 kb on + strand, within OH686_21400at 4379.101 kb on + strand, within OH686_21400at 4379.101 kb on + strand, within OH686_21400at 4379.102 kb on - strand, within OH686_21400at 4379.110 kb on + strand, within OH686_21400at 4379.110 kb on + strand, within OH686_21400at 4379.111 kb on - strand, within OH686_21400at 4379.131 kb on - strand, within OH686_21400at 4379.187 kb on + strand, within OH686_21400at 4379.187 kb on + strand, within OH686_21400at 4379.187 kb on + strand, within OH686_21400at 4379.187 kb on + strand, within OH686_21400at 4379.187 kb on + strand, within OH686_21400at 4379.187 kb on + strand, within OH686_21400at 4379.187 kb on + strand, within OH686_21400at 4379.188 kb on - strand, within OH686_21400at 4379.291 kb on + strand, within OH686_21400at 4379.291 kb on + strand, within OH686_21400at 4379.291 kb on + strand, within OH686_21400at 4379.291 kb on + strand, within OH686_21400at 4379.291 kb on + strand, within OH686_21400at 4379.292 kb on - strand, within OH686_21400at 4379.292 kb on - strand, within OH686_21400at 4379.292 kb on - strand, within OH686_21400at 4379.292 kb on - strand, within OH686_21400at 4379.306 kb on + strand, within OH686_21400at 4379.447 kb on + strandat 4379.447 kb on + strandat 4379.532 kb on + strand, within OH686_21405at 4379.532 kb on + strand, within OH686_21405at 4379.561 kb on + strand, within OH686_21405at 4379.602 kb on + strand, within OH686_21405at 4379.602 kb on + strand, within OH686_21405at 4379.602 kb on + strand, within OH686_21405at 4379.602 kb on + strand, within OH686_21405at 4379.603 kb on - strand, within OH686_21405at 4379.735 kb on + strand, within OH686_21405at 4379.736 kb on - strand, within OH686_21405

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,377,254 + -1.3
4,377,254 + +0.7
4,377,254 + -0.3
4,377,254 + -0.1
4,377,345 + +0.3
4,377,345 + +0.5
4,377,345 + +0.7
4,377,360 + +0.3
4,377,394 + OH686_21380 0.14 -0.3
4,377,394 + OH686_21380 0.14 +0.5
4,377,394 + OH686_21380 0.14 +0.5
4,377,394 + OH686_21380 0.14 +0.8
4,377,438 + OH686_21380 0.31 +0.5
4,377,507 + OH686_21380 0.59 +1.0
4,377,507 + OH686_21380 0.59 -0.4
4,377,610 + -0.1
4,377,610 + +0.5
4,377,610 + -1.2
4,377,610 + +0.8
4,377,610 + +0.0
4,377,610 + +0.2
4,377,610 + -0.7
4,377,610 + -0.2
4,377,610 + -0.0
4,377,610 + -0.3
4,377,610 + -0.7
4,377,610 + -0.2
4,377,610 + -0.7
4,377,611 - -1.3
4,377,611 - -1.0
4,377,611 - +1.6
4,377,611 - +2.6
4,377,677 + OH686_21385 0.25 -0.1
4,377,677 + OH686_21385 0.25 -1.4
4,377,677 + OH686_21385 0.25 -0.2
4,377,677 + OH686_21385 0.25 -0.2
4,377,677 + OH686_21385 0.25 -0.4
4,377,677 + OH686_21385 0.25 +0.4
4,377,677 + OH686_21385 0.25 +1.7
4,377,678 - OH686_21385 0.25 +0.5
4,377,678 - OH686_21385 0.25 +0.5
4,377,718 + OH686_21385 0.37 +0.0
4,377,718 + OH686_21385 0.37 -1.3
4,377,719 - OH686_21385 0.38 -0.0
4,377,719 - OH686_21385 0.38 -1.0
4,377,719 - OH686_21385 0.38 +0.7
4,377,770 + OH686_21385 0.54 -0.3
4,377,770 + OH686_21385 0.54 +0.1
4,377,770 + OH686_21385 0.54 +0.4
4,377,770 + OH686_21385 0.54 -0.2
4,377,770 + OH686_21385 0.54 +0.0
4,377,770 + OH686_21385 0.54 +0.1
4,377,770 + OH686_21385 0.54 +0.2
4,377,770 + OH686_21385 0.54 +0.7
4,377,770 + OH686_21385 0.54 -0.2
4,377,770 + OH686_21385 0.54 +0.1
4,377,770 + OH686_21385 0.54 -0.4
4,377,770 + OH686_21385 0.54 +0.3
4,377,770 + OH686_21385 0.54 -0.6
4,377,770 + OH686_21385 0.54 -1.2
4,377,770 + OH686_21385 0.54 -0.8
4,377,770 + OH686_21385 0.54 -1.1
4,377,770 + OH686_21385 0.54 -0.1
4,377,771 - OH686_21385 0.54 +0.1
4,377,771 - OH686_21385 0.54 -0.6
4,377,771 - OH686_21385 0.54 -0.3
4,377,771 - OH686_21385 0.54 -2.2
4,377,771 - OH686_21385 0.54 +0.1
4,377,771 - OH686_21385 0.54 -0.7
4,377,771 - OH686_21385 0.54 +0.8
4,377,771 - OH686_21385 0.54 +0.0
4,377,771 - OH686_21385 0.54 +1.1
4,377,771 - OH686_21385 0.54 +1.1
4,377,771 - OH686_21385 0.54 +0.3
4,377,771 - OH686_21385 0.54 -0.5
4,377,771 - OH686_21385 0.54 +0.6
4,377,771 - OH686_21385 0.54 -0.3
4,377,821 + OH686_21385 0.69 +0.2
4,377,821 + OH686_21385 0.69 -0.4
4,377,821 + OH686_21385 0.69 -0.4
4,377,821 + OH686_21385 0.69 +0.3
4,377,821 + OH686_21385 0.69 +1.0
4,377,822 - OH686_21385 0.70 -0.9
4,377,822 - OH686_21385 0.70 -0.0
4,377,822 - OH686_21385 0.70 -0.1
4,377,822 - OH686_21385 0.70 +0.6
4,377,822 - OH686_21385 0.70 +0.4
4,377,866 + OH686_21385 0.83 +0.6
4,377,866 + OH686_21385 0.83 +0.0
4,377,866 + OH686_21385 0.83 +0.8
4,377,866 + OH686_21385 0.83 -0.8
4,377,867 - OH686_21385 0.84 +0.7
4,377,872 + OH686_21385 0.85 -1.2
4,377,872 + OH686_21385 0.85 -0.4
4,377,872 + OH686_21385 0.85 -0.2
4,377,872 + OH686_21385 0.85 -0.2
4,377,872 + OH686_21385 0.85 -0.3
4,377,872 + OH686_21385 0.85 +0.1
4,377,873 - OH686_21385 0.86 -1.7
4,377,873 - OH686_21385 0.86 -0.5
4,377,873 - OH686_21385 0.86 +0.6
4,377,873 - OH686_21385 0.86 -0.2
4,377,873 - OH686_21385 0.86 -0.3
4,377,873 - OH686_21385 0.86 +0.5
4,377,873 - OH686_21385 0.86 -0.2
4,377,905 + +0.8
4,377,905 + -0.2
4,377,905 + -1.8
4,377,905 + +0.1
4,377,905 + +0.1
4,377,905 + -1.0
4,377,906 - +1.2
4,377,906 - -0.1
4,377,906 - -0.6
4,377,906 - -0.1
4,377,906 - +0.1
4,377,906 - -0.3
4,377,906 - -0.4
4,377,988 + +0.3
4,377,988 + -0.0
4,377,988 + +1.1
4,377,988 + +0.4
4,378,164 + OH686_21390 0.71 -0.7
4,378,631 + OH686_21395 0.79 +0.3
4,378,631 + OH686_21395 0.79 -0.6
4,378,631 + OH686_21395 0.79 -0.3
4,378,631 + OH686_21395 0.79 +1.0
4,378,632 - OH686_21395 0.79 -0.2
4,378,632 - OH686_21395 0.79 +1.3
4,378,692 + +1.5
4,378,692 + +0.8
4,378,715 + -0.5
4,378,715 + +0.5
4,378,879 + OH686_21400 0.21 +0.0
4,378,879 + OH686_21400 0.21 -1.6
4,378,879 + OH686_21400 0.21 +0.7
4,378,879 + OH686_21400 0.21 -0.4
4,378,879 + OH686_21400 0.21 +0.4
4,378,879 + OH686_21400 0.21 +0.4
4,378,879 + OH686_21400 0.21 +0.1
4,378,879 + OH686_21400 0.21 +1.0
4,378,879 + OH686_21400 0.21 +0.1
4,378,879 + OH686_21400 0.21 +0.4
4,378,879 + OH686_21400 0.21 +0.1
4,378,879 + OH686_21400 0.21 +0.7
4,378,879 + OH686_21400 0.21 +0.4
4,378,879 + OH686_21400 0.21 +1.1
4,378,879 + OH686_21400 0.21 +0.3
4,378,879 + OH686_21400 0.21 -0.2
4,378,880 - OH686_21400 0.21 -0.0
4,378,880 - OH686_21400 0.21 -0.1
4,378,880 - OH686_21400 0.21 -0.2
4,378,880 - OH686_21400 0.21 +0.6
4,378,880 - OH686_21400 0.21 +0.6
4,378,880 - OH686_21400 0.21 -0.4
4,378,880 - OH686_21400 0.21 +0.3
4,378,880 - OH686_21400 0.21 -0.0
4,378,880 - OH686_21400 0.21 -0.4
4,378,880 - OH686_21400 0.21 +0.4
4,378,880 - OH686_21400 0.21 +0.1
4,378,906 + OH686_21400 0.25 -1.2
4,378,906 + OH686_21400 0.25 +0.6
4,378,906 + OH686_21400 0.25 -0.7
4,378,906 + OH686_21400 0.25 -1.2
4,378,907 - OH686_21400 0.25 +0.3
4,378,907 - OH686_21400 0.25 +0.1
4,378,907 - OH686_21400 0.25 -0.8
4,378,907 - OH686_21400 0.25 +0.7
4,378,907 - OH686_21400 0.25 +0.8
4,378,907 - OH686_21400 0.25 -0.1
4,378,907 - OH686_21400 0.25 +0.4
4,378,907 - OH686_21400 0.25 +0.9
4,378,907 - OH686_21400 0.25 -0.5
4,379,089 + OH686_21400 0.52 -0.4
4,379,101 + OH686_21400 0.53 +0.3
4,379,101 + OH686_21400 0.53 -0.6
4,379,102 - OH686_21400 0.54 +0.6
4,379,110 + OH686_21400 0.55 -0.6
4,379,110 + OH686_21400 0.55 -0.2
4,379,111 - OH686_21400 0.55 -0.4
4,379,131 - OH686_21400 0.58 -0.1
4,379,187 + OH686_21400 0.66 -0.7
4,379,187 + OH686_21400 0.66 +0.1
4,379,187 + OH686_21400 0.66 +0.3
4,379,187 + OH686_21400 0.66 -1.0
4,379,187 + OH686_21400 0.66 -0.9
4,379,187 + OH686_21400 0.66 -0.4
4,379,187 + OH686_21400 0.66 -0.2
4,379,188 - OH686_21400 0.66 -0.2
4,379,291 + OH686_21400 0.81 -0.4
4,379,291 + OH686_21400 0.81 +0.8
4,379,291 + OH686_21400 0.81 +0.2
4,379,291 + OH686_21400 0.81 +0.5
4,379,291 + OH686_21400 0.81 +0.2
4,379,292 - OH686_21400 0.81 +0.8
4,379,292 - OH686_21400 0.81 +0.5
4,379,292 - OH686_21400 0.81 -0.0
4,379,292 - OH686_21400 0.81 -0.3
4,379,306 + OH686_21400 0.83 -0.0
4,379,447 + +0.3
4,379,447 + +0.1
4,379,532 + OH686_21405 0.27 -1.3
4,379,532 + OH686_21405 0.27 +0.5
4,379,561 + OH686_21405 0.34 +1.4
4,379,602 + OH686_21405 0.44 +1.5
4,379,602 + OH686_21405 0.44 -0.7
4,379,602 + OH686_21405 0.44 -0.0
4,379,602 + OH686_21405 0.44 -2.5
4,379,603 - OH686_21405 0.44 +0.0
4,379,735 + OH686_21405 0.75 +0.7
4,379,736 - OH686_21405 0.75 +0.7

Or see this region's nucleotide sequence