Strain Fitness in Pseudomonas sp. S08-1 around OH686_20325

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20320 and OH686_20325 are separated by 839 nucleotidesOH686_20325 and OH686_20330 are separated by 2 nucleotidesOH686_20330 and OH686_20335 are separated by 157 nucleotides OH686_20320: OH686_20320 - hypothetical protein, at 4,146,695 to 4,146,964 _20320 OH686_20325: OH686_20325 - hypothetical protein' product='hypothetical protein, at 4,147,804 to 4,148,385 _20325 OH686_20330: OH686_20330 - hypothetical protein, at 4,148,388 to 4,149,026 _20330 OH686_20335: OH686_20335 - Ribonucleotide reductase of class Ia (aerobic), beta subunit , at 4,149,184 to 4,150,449 _20335 Position (kb) 4147 4148 4149Strain fitness (log2 ratio) -1 0 1at 4146.817 kb on + strand, within OH686_20320at 4146.818 kb on - strand, within OH686_20320at 4146.818 kb on - strand, within OH686_20320at 4147.086 kb on + strandat 4147.086 kb on + strandat 4147.111 kb on - strandat 4147.111 kb on - strandat 4147.131 kb on - strandat 4147.193 kb on - strandat 4147.193 kb on - strandat 4147.216 kb on - strandat 4147.216 kb on - strandat 4147.216 kb on - strandat 4147.216 kb on - strandat 4147.317 kb on + strandat 4147.317 kb on + strandat 4147.318 kb on - strandat 4147.318 kb on - strandat 4147.318 kb on - strandat 4147.336 kb on + strandat 4147.336 kb on + strandat 4147.336 kb on + strandat 4147.337 kb on - strandat 4147.337 kb on - strandat 4147.337 kb on - strandat 4147.379 kb on + strandat 4147.398 kb on - strandat 4147.406 kb on + strandat 4147.520 kb on + strandat 4147.520 kb on + strandat 4147.520 kb on + strandat 4147.520 kb on + strandat 4147.520 kb on + strandat 4147.520 kb on + strandat 4147.521 kb on - strandat 4147.521 kb on - strandat 4147.535 kb on - strandat 4147.535 kb on - strandat 4147.557 kb on + strandat 4147.557 kb on + strandat 4147.558 kb on - strandat 4147.558 kb on - strandat 4147.558 kb on - strandat 4147.558 kb on - strandat 4147.642 kb on - strandat 4147.776 kb on - strandat 4147.812 kb on + strandat 4147.832 kb on - strandat 4147.878 kb on + strand, within OH686_20325at 4147.879 kb on - strand, within OH686_20325at 4147.879 kb on - strand, within OH686_20325at 4147.879 kb on - strand, within OH686_20325at 4147.900 kb on + strand, within OH686_20325at 4147.991 kb on - strand, within OH686_20325at 4147.991 kb on - strand, within OH686_20325at 4148.050 kb on + strand, within OH686_20325at 4148.126 kb on + strand, within OH686_20325at 4148.174 kb on - strand, within OH686_20325at 4148.180 kb on + strand, within OH686_20325at 4148.181 kb on - strand, within OH686_20325at 4148.207 kb on - strand, within OH686_20325at 4148.250 kb on - strand, within OH686_20325at 4148.250 kb on - strand, within OH686_20325at 4148.468 kb on + strand, within OH686_20330at 4148.469 kb on - strand, within OH686_20330at 4148.469 kb on - strand, within OH686_20330at 4148.477 kb on - strand, within OH686_20330at 4148.493 kb on - strand, within OH686_20330at 4148.493 kb on - strand, within OH686_20330at 4148.504 kb on + strand, within OH686_20330at 4148.505 kb on - strand, within OH686_20330at 4148.514 kb on - strand, within OH686_20330at 4148.533 kb on - strand, within OH686_20330at 4148.587 kb on - strand, within OH686_20330at 4148.749 kb on - strand, within OH686_20330at 4149.012 kb on + strandat 4149.042 kb on - strandat 4149.054 kb on + strandat 4149.079 kb on + strandat 4149.113 kb on + strandat 4149.113 kb on + strandat 4149.113 kb on + strandat 4149.113 kb on + strandat 4149.185 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,146,817 + OH686_20320 0.45 -1.1
4,146,818 - OH686_20320 0.46 -0.2
4,146,818 - OH686_20320 0.46 -0.3
4,147,086 + +0.5
4,147,086 + -0.2
4,147,111 - -0.0
4,147,111 - -0.2
4,147,131 - -0.7
4,147,193 - +0.5
4,147,193 - -0.5
4,147,216 - +0.6
4,147,216 - +0.9
4,147,216 - +0.6
4,147,216 - +0.1
4,147,317 + +0.6
4,147,317 + +0.3
4,147,318 - +1.4
4,147,318 - +0.1
4,147,318 - -0.1
4,147,336 + -0.9
4,147,336 + -1.2
4,147,336 + -0.9
4,147,337 - +1.6
4,147,337 - +0.7
4,147,337 - -0.9
4,147,379 + +0.6
4,147,398 - +1.2
4,147,406 + +0.4
4,147,520 + -0.4
4,147,520 + -1.4
4,147,520 + +0.7
4,147,520 + +0.1
4,147,520 + +0.5
4,147,520 + +0.4
4,147,521 - -0.5
4,147,521 - -0.2
4,147,535 - -0.4
4,147,535 - -0.5
4,147,557 + -1.0
4,147,557 + +0.3
4,147,558 - +0.0
4,147,558 - -0.7
4,147,558 - -0.5
4,147,558 - -0.9
4,147,642 - -0.4
4,147,776 - -0.1
4,147,812 + -0.6
4,147,832 - +0.3
4,147,878 + OH686_20325 0.13 +0.4
4,147,879 - OH686_20325 0.13 -0.0
4,147,879 - OH686_20325 0.13 -0.8
4,147,879 - OH686_20325 0.13 +0.4
4,147,900 + OH686_20325 0.16 -0.4
4,147,991 - OH686_20325 0.32 +0.3
4,147,991 - OH686_20325 0.32 +0.9
4,148,050 + OH686_20325 0.42 -0.3
4,148,126 + OH686_20325 0.55 +0.0
4,148,174 - OH686_20325 0.64 +0.0
4,148,180 + OH686_20325 0.65 -0.7
4,148,181 - OH686_20325 0.65 +1.0
4,148,207 - OH686_20325 0.69 -0.6
4,148,250 - OH686_20325 0.77 +0.5
4,148,250 - OH686_20325 0.77 +1.6
4,148,468 + OH686_20330 0.13 +1.2
4,148,469 - OH686_20330 0.13 +0.2
4,148,469 - OH686_20330 0.13 +0.0
4,148,477 - OH686_20330 0.14 -0.6
4,148,493 - OH686_20330 0.16 -0.2
4,148,493 - OH686_20330 0.16 -1.1
4,148,504 + OH686_20330 0.18 +0.1
4,148,505 - OH686_20330 0.18 +0.0
4,148,514 - OH686_20330 0.20 +0.2
4,148,533 - OH686_20330 0.23 +0.6
4,148,587 - OH686_20330 0.31 +0.1
4,148,749 - OH686_20330 0.56 +0.2
4,149,012 + -0.9
4,149,042 - -0.3
4,149,054 + +0.2
4,149,079 + -0.3
4,149,113 + +0.2
4,149,113 + +0.5
4,149,113 + -1.0
4,149,113 + +0.2
4,149,185 + +0.1

Or see this region's nucleotide sequence