Strain Fitness in Pseudomonas sp. S08-1 around OH686_18835

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_18825 and OH686_18830 are separated by 53 nucleotidesOH686_18830 and OH686_18835 are separated by 48 nucleotidesOH686_18835 and OH686_18840 are separated by 70 nucleotidesOH686_18840 and OH686_18845 are separated by 10 nucleotidesOH686_18845 and OH686_18850 are separated by 22 nucleotides OH686_18825: OH686_18825 - Ferredoxin--NADP(+) reductase or Flavodoxin--NADP(+) reductase , at 3,896,085 to 3,896,912 _18825 OH686_18830: OH686_18830 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA, at 3,896,966 to 3,897,658 _18830 OH686_18835: OH686_18835 - putative lyase, at 3,897,707 to 3,898,117 _18835 OH686_18840: OH686_18840 - hypothetical protein, at 3,898,188 to 3,898,460 _18840 OH686_18845: OH686_18845 - hypothetical protein, at 3,898,471 to 3,898,887 _18845 OH686_18850: OH686_18850 - Acetyltransferase, GNAT family, at 3,898,910 to 3,899,341 _18850 Position (kb) 3897 3898 3899Strain fitness (log2 ratio) -2 -1 0 1 2at 3896.910 kb on + strandat 3896.910 kb on + strandat 3896.910 kb on + strandat 3896.910 kb on + strandat 3896.910 kb on + strandat 3896.910 kb on + strandat 3896.910 kb on + strandat 3896.910 kb on + strandat 3896.911 kb on - strandat 3896.911 kb on - strandat 3896.911 kb on - strandat 3896.911 kb on - strandat 3896.911 kb on - strandat 3896.924 kb on + strandat 3896.924 kb on + strandat 3896.924 kb on + strandat 3896.924 kb on + strandat 3896.924 kb on + strandat 3896.924 kb on + strandat 3896.925 kb on - strandat 3896.925 kb on - strandat 3896.925 kb on - strandat 3896.925 kb on - strandat 3896.925 kb on - strandat 3896.925 kb on - strandat 3897.013 kb on - strandat 3897.051 kb on + strand, within OH686_18830at 3897.052 kb on - strand, within OH686_18830at 3897.078 kb on + strand, within OH686_18830at 3897.079 kb on - strand, within OH686_18830at 3897.079 kb on - strand, within OH686_18830at 3897.252 kb on + strand, within OH686_18830at 3897.252 kb on + strand, within OH686_18830at 3897.261 kb on + strand, within OH686_18830at 3897.261 kb on + strand, within OH686_18830at 3897.261 kb on + strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.262 kb on - strand, within OH686_18830at 3897.398 kb on + strand, within OH686_18830at 3897.399 kb on - strand, within OH686_18830at 3897.915 kb on + strand, within OH686_18835at 3897.915 kb on + strand, within OH686_18835at 3897.916 kb on - strand, within OH686_18835at 3897.916 kb on - strand, within OH686_18835at 3897.916 kb on - strand, within OH686_18835at 3897.975 kb on + strand, within OH686_18835at 3897.976 kb on - strand, within OH686_18835at 3897.976 kb on - strand, within OH686_18835at 3898.027 kb on - strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.059 kb on + strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.060 kb on - strand, within OH686_18835at 3898.210 kb on - strandat 3898.354 kb on + strand, within OH686_18840at 3898.354 kb on + strand, within OH686_18840at 3898.354 kb on + strand, within OH686_18840at 3898.354 kb on + strand, within OH686_18840at 3898.354 kb on + strand, within OH686_18840at 3898.355 kb on - strand, within OH686_18840at 3898.355 kb on - strand, within OH686_18840at 3898.355 kb on - strand, within OH686_18840at 3898.355 kb on - strand, within OH686_18840at 3898.355 kb on - strand, within OH686_18840at 3898.355 kb on - strand, within OH686_18840at 3898.355 kb on - strand, within OH686_18840at 3898.508 kb on + strandat 3898.563 kb on + strand, within OH686_18845at 3898.563 kb on + strand, within OH686_18845at 3898.563 kb on + strand, within OH686_18845at 3898.564 kb on - strand, within OH686_18845at 3898.564 kb on - strand, within OH686_18845at 3898.564 kb on - strand, within OH686_18845at 3898.564 kb on - strand, within OH686_18845at 3898.564 kb on - strand, within OH686_18845at 3898.564 kb on - strand, within OH686_18845at 3898.564 kb on - strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.649 kb on + strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.650 kb on - strand, within OH686_18845at 3898.831 kb on + strand, within OH686_18845at 3898.831 kb on + strand, within OH686_18845at 3898.831 kb on + strand, within OH686_18845at 3898.831 kb on + strand, within OH686_18845at 3898.831 kb on + strand, within OH686_18845at 3898.832 kb on - strand, within OH686_18845at 3898.832 kb on - strand, within OH686_18845at 3898.832 kb on - strand, within OH686_18845at 3898.832 kb on - strand, within OH686_18845at 3898.832 kb on - strand, within OH686_18845at 3898.832 kb on - strand, within OH686_18845at 3898.850 kb on + strandat 3898.850 kb on + strandat 3898.850 kb on + strandat 3898.851 kb on - strandat 3898.851 kb on - strandat 3898.851 kb on - strandat 3898.851 kb on - strandat 3898.883 kb on + strandat 3898.883 kb on + strandat 3898.883 kb on + strandat 3898.883 kb on + strandat 3898.883 kb on + strandat 3898.883 kb on + strandat 3898.883 kb on + strandat 3898.883 kb on + strandat 3898.883 kb on + strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.884 kb on - strandat 3898.926 kb on + strandat 3898.926 kb on + strandat 3898.926 kb on + strandat 3898.926 kb on + strandat 3898.926 kb on + strandat 3898.926 kb on + strandat 3898.926 kb on + strandat 3898.926 kb on + strandat 3898.927 kb on - strandat 3898.927 kb on - strandat 3898.927 kb on - strandat 3898.927 kb on - strandat 3898.927 kb on - strandat 3898.927 kb on - strandat 3898.927 kb on - strandat 3898.927 kb on - strandat 3899.004 kb on + strand, within OH686_18850at 3899.004 kb on + strand, within OH686_18850at 3899.004 kb on + strand, within OH686_18850at 3899.004 kb on + strand, within OH686_18850at 3899.005 kb on - strand, within OH686_18850at 3899.005 kb on - strand, within OH686_18850at 3899.005 kb on - strand, within OH686_18850at 3899.005 kb on - strand, within OH686_18850at 3899.005 kb on - strand, within OH686_18850at 3899.005 kb on - strand, within OH686_18850at 3899.031 kb on + strand, within OH686_18850at 3899.031 kb on + strand, within OH686_18850at 3899.031 kb on + strand, within OH686_18850at 3899.032 kb on - strand, within OH686_18850at 3899.032 kb on - strand, within OH686_18850at 3899.081 kb on + strand, within OH686_18850at 3899.081 kb on + strand, within OH686_18850at 3899.081 kb on + strand, within OH686_18850at 3899.081 kb on + strand, within OH686_18850at 3899.082 kb on - strand, within OH686_18850at 3899.082 kb on - strand, within OH686_18850at 3899.082 kb on - strand, within OH686_18850at 3899.082 kb on - strand, within OH686_18850

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,896,910 + -0.4
3,896,910 + +0.7
3,896,910 + -0.4
3,896,910 + -0.2
3,896,910 + +1.3
3,896,910 + -0.7
3,896,910 + +0.5
3,896,910 + +0.4
3,896,911 - -0.6
3,896,911 - +1.2
3,896,911 - +1.9
3,896,911 - +0.0
3,896,911 - +0.5
3,896,924 + +0.6
3,896,924 + -0.4
3,896,924 + +0.4
3,896,924 + +0.2
3,896,924 + +0.8
3,896,924 + +0.2
3,896,925 - +0.7
3,896,925 - -0.1
3,896,925 - -0.3
3,896,925 - -0.6
3,896,925 - -0.3
3,896,925 - -0.0
3,897,013 - +0.6
3,897,051 + OH686_18830 0.12 -0.1
3,897,052 - OH686_18830 0.12 +0.3
3,897,078 + OH686_18830 0.16 +0.4
3,897,079 - OH686_18830 0.16 +0.4
3,897,079 - OH686_18830 0.16 -1.5
3,897,252 + OH686_18830 0.41 +0.6
3,897,252 + OH686_18830 0.41 -0.8
3,897,261 + OH686_18830 0.43 +1.0
3,897,261 + OH686_18830 0.43 +1.2
3,897,261 + OH686_18830 0.43 +0.4
3,897,262 - OH686_18830 0.43 +0.5
3,897,262 - OH686_18830 0.43 -0.2
3,897,262 - OH686_18830 0.43 +0.5
3,897,262 - OH686_18830 0.43 +0.2
3,897,262 - OH686_18830 0.43 -0.8
3,897,262 - OH686_18830 0.43 +1.0
3,897,262 - OH686_18830 0.43 -0.9
3,897,262 - OH686_18830 0.43 +0.9
3,897,262 - OH686_18830 0.43 +1.9
3,897,398 + OH686_18830 0.62 +0.9
3,897,399 - OH686_18830 0.62 +0.4
3,897,915 + OH686_18835 0.51 -0.2
3,897,915 + OH686_18835 0.51 +0.5
3,897,916 - OH686_18835 0.51 +0.9
3,897,916 - OH686_18835 0.51 +0.2
3,897,916 - OH686_18835 0.51 -0.4
3,897,975 + OH686_18835 0.65 +0.3
3,897,976 - OH686_18835 0.65 +0.3
3,897,976 - OH686_18835 0.65 -0.2
3,898,027 - OH686_18835 0.78 +0.7
3,898,059 + OH686_18835 0.86 +0.1
3,898,059 + OH686_18835 0.86 -0.2
3,898,059 + OH686_18835 0.86 +1.0
3,898,059 + OH686_18835 0.86 +0.3
3,898,059 + OH686_18835 0.86 -0.6
3,898,059 + OH686_18835 0.86 +1.1
3,898,059 + OH686_18835 0.86 +0.1
3,898,059 + OH686_18835 0.86 +1.3
3,898,059 + OH686_18835 0.86 -0.6
3,898,059 + OH686_18835 0.86 -0.8
3,898,060 - OH686_18835 0.86 +0.6
3,898,060 - OH686_18835 0.86 -0.4
3,898,060 - OH686_18835 0.86 +0.1
3,898,060 - OH686_18835 0.86 +0.3
3,898,060 - OH686_18835 0.86 +0.8
3,898,060 - OH686_18835 0.86 -0.1
3,898,060 - OH686_18835 0.86 +0.7
3,898,060 - OH686_18835 0.86 +0.5
3,898,060 - OH686_18835 0.86 +0.3
3,898,210 - +1.2
3,898,354 + OH686_18840 0.61 +1.0
3,898,354 + OH686_18840 0.61 -0.5
3,898,354 + OH686_18840 0.61 -0.5
3,898,354 + OH686_18840 0.61 +0.2
3,898,354 + OH686_18840 0.61 -0.1
3,898,355 - OH686_18840 0.61 -0.4
3,898,355 - OH686_18840 0.61 +1.2
3,898,355 - OH686_18840 0.61 -0.0
3,898,355 - OH686_18840 0.61 +0.4
3,898,355 - OH686_18840 0.61 -1.2
3,898,355 - OH686_18840 0.61 -0.1
3,898,355 - OH686_18840 0.61 +1.2
3,898,508 + +0.8
3,898,563 + OH686_18845 0.22 +1.2
3,898,563 + OH686_18845 0.22 -0.0
3,898,563 + OH686_18845 0.22 -0.2
3,898,564 - OH686_18845 0.22 -0.5
3,898,564 - OH686_18845 0.22 -0.1
3,898,564 - OH686_18845 0.22 -0.8
3,898,564 - OH686_18845 0.22 +0.2
3,898,564 - OH686_18845 0.22 +0.1
3,898,564 - OH686_18845 0.22 -0.5
3,898,564 - OH686_18845 0.22 +0.4
3,898,649 + OH686_18845 0.43 +0.1
3,898,649 + OH686_18845 0.43 +1.1
3,898,649 + OH686_18845 0.43 -0.2
3,898,649 + OH686_18845 0.43 +0.3
3,898,649 + OH686_18845 0.43 -1.1
3,898,649 + OH686_18845 0.43 -0.3
3,898,649 + OH686_18845 0.43 +0.6
3,898,649 + OH686_18845 0.43 -1.0
3,898,649 + OH686_18845 0.43 -0.7
3,898,649 + OH686_18845 0.43 +0.8
3,898,649 + OH686_18845 0.43 -0.2
3,898,649 + OH686_18845 0.43 +0.3
3,898,649 + OH686_18845 0.43 -0.5
3,898,649 + OH686_18845 0.43 +0.1
3,898,650 - OH686_18845 0.43 -1.8
3,898,650 - OH686_18845 0.43 -0.1
3,898,650 - OH686_18845 0.43 -0.5
3,898,650 - OH686_18845 0.43 -0.5
3,898,650 - OH686_18845 0.43 -0.4
3,898,650 - OH686_18845 0.43 -0.0
3,898,650 - OH686_18845 0.43 -0.4
3,898,650 - OH686_18845 0.43 +0.6
3,898,650 - OH686_18845 0.43 +0.8
3,898,650 - OH686_18845 0.43 +0.8
3,898,650 - OH686_18845 0.43 +0.2
3,898,650 - OH686_18845 0.43 +0.5
3,898,650 - OH686_18845 0.43 +0.5
3,898,650 - OH686_18845 0.43 +0.1
3,898,650 - OH686_18845 0.43 +1.6
3,898,831 + OH686_18845 0.86 +0.5
3,898,831 + OH686_18845 0.86 +1.1
3,898,831 + OH686_18845 0.86 -0.3
3,898,831 + OH686_18845 0.86 +0.4
3,898,831 + OH686_18845 0.86 -0.7
3,898,832 - OH686_18845 0.87 -0.1
3,898,832 - OH686_18845 0.87 +0.1
3,898,832 - OH686_18845 0.87 +0.3
3,898,832 - OH686_18845 0.87 +0.4
3,898,832 - OH686_18845 0.87 -1.3
3,898,832 - OH686_18845 0.87 +0.3
3,898,850 + +0.4
3,898,850 + +0.5
3,898,850 + -1.1
3,898,851 - +0.4
3,898,851 - -0.9
3,898,851 - -1.1
3,898,851 - -0.5
3,898,883 + +0.8
3,898,883 + +0.5
3,898,883 + -0.5
3,898,883 + -0.7
3,898,883 + -0.8
3,898,883 + +0.7
3,898,883 + +0.4
3,898,883 + -0.8
3,898,883 + +0.4
3,898,884 - +0.5
3,898,884 - +1.5
3,898,884 - +0.2
3,898,884 - +0.1
3,898,884 - -1.3
3,898,884 - +0.3
3,898,884 - +0.5
3,898,884 - -0.8
3,898,884 - -0.4
3,898,884 - -0.9
3,898,926 + -0.2
3,898,926 + +0.5
3,898,926 + -0.5
3,898,926 + +0.1
3,898,926 + -0.1
3,898,926 + +0.3
3,898,926 + -1.5
3,898,926 + -0.1
3,898,927 - +0.5
3,898,927 - -0.8
3,898,927 - -0.5
3,898,927 - +0.1
3,898,927 - +0.1
3,898,927 - +0.1
3,898,927 - -0.9
3,898,927 - +0.1
3,899,004 + OH686_18850 0.22 +0.1
3,899,004 + OH686_18850 0.22 +0.1
3,899,004 + OH686_18850 0.22 +0.0
3,899,004 + OH686_18850 0.22 -0.0
3,899,005 - OH686_18850 0.22 +0.3
3,899,005 - OH686_18850 0.22 -1.5
3,899,005 - OH686_18850 0.22 +0.1
3,899,005 - OH686_18850 0.22 -0.7
3,899,005 - OH686_18850 0.22 -0.3
3,899,005 - OH686_18850 0.22 +0.5
3,899,031 + OH686_18850 0.28 +0.6
3,899,031 + OH686_18850 0.28 +0.8
3,899,031 + OH686_18850 0.28 -0.6
3,899,032 - OH686_18850 0.28 +0.5
3,899,032 - OH686_18850 0.28 +0.6
3,899,081 + OH686_18850 0.40 -1.4
3,899,081 + OH686_18850 0.40 +1.3
3,899,081 + OH686_18850 0.40 +0.8
3,899,081 + OH686_18850 0.40 -0.3
3,899,082 - OH686_18850 0.40 -0.9
3,899,082 - OH686_18850 0.40 -1.6
3,899,082 - OH686_18850 0.40 -0.6
3,899,082 - OH686_18850 0.40 +0.9

Or see this region's nucleotide sequence