Strain Fitness in Pseudomonas sp. S08-1 around OH686_16100

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_16085 and OH686_16090 are separated by 61 nucleotidesOH686_16090 and OH686_16095 overlap by 11 nucleotidesOH686_16095 and OH686_16100 overlap by 32 nucleotidesOH686_16100 and OH686_16105 overlap by 4 nucleotidesOH686_16105 and OH686_16110 are separated by 97 nucleotides OH686_16085: OH686_16085 - Transcriptional regulator, MerR family, at 3,364,846 to 3,365,271 _16085 OH686_16090: OH686_16090 - Cobalt/zinc/cadmium resistance protein CzcD, at 3,365,333 to 3,365,965 _16090 OH686_16095: OH686_16095 - hypothetical protein, at 3,365,955 to 3,366,290 _16095 OH686_16100: OH686_16100 - Glutathione S-transferase, at 3,366,259 to 3,366,972 _16100 OH686_16105: OH686_16105 - hypothetical protein, at 3,366,969 to 3,367,370 _16105 OH686_16110: OH686_16110 - Transcriptional regulator, LysR family, at 3,367,468 to 3,368,340 _16110 Position (kb) 3366 3367Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3365.303 kb on + strandat 3365.303 kb on + strandat 3365.303 kb on + strandat 3365.303 kb on + strandat 3365.304 kb on - strandat 3365.448 kb on + strand, within OH686_16090at 3365.449 kb on - strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.522 kb on + strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.523 kb on - strand, within OH686_16090at 3365.732 kb on + strand, within OH686_16090at 3365.732 kb on + strand, within OH686_16090at 3365.732 kb on + strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.733 kb on - strand, within OH686_16090at 3365.758 kb on + strand, within OH686_16090at 3365.758 kb on + strand, within OH686_16090at 3365.759 kb on - strand, within OH686_16090at 3365.759 kb on - strand, within OH686_16090at 3365.759 kb on - strand, within OH686_16090at 3365.759 kb on - strand, within OH686_16090at 3365.796 kb on + strand, within OH686_16090at 3365.796 kb on + strand, within OH686_16090at 3365.797 kb on - strand, within OH686_16090at 3365.797 kb on - strand, within OH686_16090at 3365.797 kb on - strand, within OH686_16090at 3365.884 kb on + strand, within OH686_16090at 3365.884 kb on + strand, within OH686_16090at 3365.884 kb on + strand, within OH686_16090at 3365.884 kb on + strand, within OH686_16090at 3365.884 kb on + strand, within OH686_16090at 3365.885 kb on - strand, within OH686_16090at 3365.885 kb on - strand, within OH686_16090at 3365.885 kb on - strand, within OH686_16090at 3365.885 kb on - strand, within OH686_16090at 3365.885 kb on - strand, within OH686_16090at 3365.885 kb on - strand, within OH686_16090at 3365.895 kb on + strand, within OH686_16090at 3366.063 kb on - strand, within OH686_16095at 3366.413 kb on - strand, within OH686_16100at 3366.492 kb on - strand, within OH686_16100at 3366.638 kb on + strand, within OH686_16100at 3366.752 kb on + strand, within OH686_16100at 3366.753 kb on - strand, within OH686_16100at 3366.923 kb on + strandat 3366.923 kb on + strandat 3366.923 kb on + strandat 3366.923 kb on + strandat 3366.923 kb on + strandat 3366.923 kb on + strandat 3366.923 kb on + strandat 3366.923 kb on + strandat 3366.924 kb on - strandat 3366.924 kb on - strandat 3366.924 kb on - strandat 3366.924 kb on - strandat 3366.924 kb on - strandat 3367.207 kb on - strand, within OH686_16105at 3367.207 kb on - strand, within OH686_16105at 3367.261 kb on + strand, within OH686_16105at 3367.261 kb on + strand, within OH686_16105at 3367.262 kb on - strand, within OH686_16105at 3367.262 kb on - strand, within OH686_16105at 3367.262 kb on - strand, within OH686_16105at 3367.262 kb on - strand, within OH686_16105at 3367.262 kb on - strand, within OH686_16105at 3367.262 kb on - strand, within OH686_16105at 3367.262 kb on - strand, within OH686_16105at 3367.309 kb on - strand, within OH686_16105at 3367.436 kb on + strandat 3367.437 kb on - strandat 3367.437 kb on - strandat 3367.452 kb on - strandat 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.630 kb on + strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.631 kb on - strand, within OH686_16110at 3367.773 kb on + strand, within OH686_16110at 3367.774 kb on - strand, within OH686_16110at 3367.794 kb on - strand, within OH686_16110at 3367.859 kb on + strand, within OH686_16110at 3367.859 kb on + strand, within OH686_16110at 3367.859 kb on + strand, within OH686_16110at 3367.859 kb on + strand, within OH686_16110at 3367.860 kb on - strand, within OH686_16110at 3367.860 kb on - strand, within OH686_16110at 3367.960 kb on + strand, within OH686_16110at 3367.960 kb on + strand, within OH686_16110at 3367.960 kb on + strand, within OH686_16110at 3367.960 kb on + strand, within OH686_16110at 3367.960 kb on + strand, within OH686_16110at 3367.961 kb on - strand, within OH686_16110at 3367.961 kb on - strand, within OH686_16110

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,365,303 + -0.3
3,365,303 + -0.1
3,365,303 + -1.2
3,365,303 + -0.5
3,365,304 - -0.8
3,365,448 + OH686_16090 0.18 +0.8
3,365,449 - OH686_16090 0.18 -0.5
3,365,522 + OH686_16090 0.30 -1.4
3,365,522 + OH686_16090 0.30 -0.8
3,365,522 + OH686_16090 0.30 -0.8
3,365,522 + OH686_16090 0.30 +0.1
3,365,522 + OH686_16090 0.30 -0.4
3,365,522 + OH686_16090 0.30 -0.4
3,365,522 + OH686_16090 0.30 +0.9
3,365,522 + OH686_16090 0.30 +1.3
3,365,522 + OH686_16090 0.30 -0.2
3,365,522 + OH686_16090 0.30 -0.2
3,365,522 + OH686_16090 0.30 -1.0
3,365,522 + OH686_16090 0.30 +1.1
3,365,522 + OH686_16090 0.30 -0.2
3,365,523 - OH686_16090 0.30 -0.2
3,365,523 - OH686_16090 0.30 +0.5
3,365,523 - OH686_16090 0.30 +1.1
3,365,523 - OH686_16090 0.30 +0.9
3,365,523 - OH686_16090 0.30 +0.4
3,365,523 - OH686_16090 0.30 +0.6
3,365,523 - OH686_16090 0.30 +0.6
3,365,523 - OH686_16090 0.30 +0.2
3,365,523 - OH686_16090 0.30 -0.4
3,365,523 - OH686_16090 0.30 +0.4
3,365,523 - OH686_16090 0.30 +1.1
3,365,523 - OH686_16090 0.30 -0.0
3,365,732 + OH686_16090 0.63 -0.4
3,365,732 + OH686_16090 0.63 -0.5
3,365,732 + OH686_16090 0.63 -0.2
3,365,733 - OH686_16090 0.63 +0.2
3,365,733 - OH686_16090 0.63 -0.1
3,365,733 - OH686_16090 0.63 +1.1
3,365,733 - OH686_16090 0.63 -0.2
3,365,733 - OH686_16090 0.63 -0.2
3,365,733 - OH686_16090 0.63 -0.0
3,365,733 - OH686_16090 0.63 +0.5
3,365,733 - OH686_16090 0.63 +0.2
3,365,733 - OH686_16090 0.63 -0.5
3,365,733 - OH686_16090 0.63 -1.5
3,365,733 - OH686_16090 0.63 -3.0
3,365,758 + OH686_16090 0.67 -0.4
3,365,758 + OH686_16090 0.67 -0.9
3,365,759 - OH686_16090 0.67 +1.8
3,365,759 - OH686_16090 0.67 -0.2
3,365,759 - OH686_16090 0.67 +1.1
3,365,759 - OH686_16090 0.67 -0.8
3,365,796 + OH686_16090 0.73 -0.8
3,365,796 + OH686_16090 0.73 +0.6
3,365,797 - OH686_16090 0.73 -1.3
3,365,797 - OH686_16090 0.73 -0.2
3,365,797 - OH686_16090 0.73 +1.5
3,365,884 + OH686_16090 0.87 +0.5
3,365,884 + OH686_16090 0.87 -0.7
3,365,884 + OH686_16090 0.87 -1.2
3,365,884 + OH686_16090 0.87 -0.9
3,365,884 + OH686_16090 0.87 +0.8
3,365,885 - OH686_16090 0.87 -0.2
3,365,885 - OH686_16090 0.87 +0.8
3,365,885 - OH686_16090 0.87 -0.2
3,365,885 - OH686_16090 0.87 -1.2
3,365,885 - OH686_16090 0.87 -0.7
3,365,885 - OH686_16090 0.87 +1.1
3,365,895 + OH686_16090 0.89 +0.8
3,366,063 - OH686_16095 0.32 -0.2
3,366,413 - OH686_16100 0.22 -0.8
3,366,492 - OH686_16100 0.33 +0.8
3,366,638 + OH686_16100 0.53 -1.1
3,366,752 + OH686_16100 0.69 +0.2
3,366,753 - OH686_16100 0.69 +0.8
3,366,923 + -0.3
3,366,923 + +0.5
3,366,923 + +0.2
3,366,923 + -1.5
3,366,923 + +0.1
3,366,923 + +0.2
3,366,923 + -0.3
3,366,923 + +0.4
3,366,924 - -0.2
3,366,924 - -0.4
3,366,924 - +0.2
3,366,924 - +0.3
3,366,924 - -0.4
3,367,207 - OH686_16105 0.59 -0.3
3,367,207 - OH686_16105 0.59 +0.1
3,367,261 + OH686_16105 0.73 -0.7
3,367,261 + OH686_16105 0.73 +0.4
3,367,262 - OH686_16105 0.73 -1.5
3,367,262 - OH686_16105 0.73 -0.2
3,367,262 - OH686_16105 0.73 -0.7
3,367,262 - OH686_16105 0.73 -0.6
3,367,262 - OH686_16105 0.73 +0.2
3,367,262 - OH686_16105 0.73 -0.3
3,367,262 - OH686_16105 0.73 +0.7
3,367,309 - OH686_16105 0.85 -1.1
3,367,436 + -0.3
3,367,437 - +0.4
3,367,437 - -0.7
3,367,452 - -0.1
3,367,630 + OH686_16110 0.19 +0.0
3,367,630 + OH686_16110 0.19 -1.1
3,367,630 + OH686_16110 0.19 +0.4
3,367,630 + OH686_16110 0.19 -0.8
3,367,630 + OH686_16110 0.19 +0.8
3,367,630 + OH686_16110 0.19 +0.3
3,367,630 + OH686_16110 0.19 +0.6
3,367,630 + OH686_16110 0.19 +0.4
3,367,630 + OH686_16110 0.19 -0.6
3,367,630 + OH686_16110 0.19 -0.8
3,367,630 + OH686_16110 0.19 -0.0
3,367,631 - OH686_16110 0.19 +0.7
3,367,631 - OH686_16110 0.19 +0.5
3,367,631 - OH686_16110 0.19 -1.4
3,367,631 - OH686_16110 0.19 +0.0
3,367,631 - OH686_16110 0.19 -0.3
3,367,631 - OH686_16110 0.19 +0.5
3,367,631 - OH686_16110 0.19 +0.4
3,367,631 - OH686_16110 0.19 -0.7
3,367,631 - OH686_16110 0.19 -0.4
3,367,631 - OH686_16110 0.19 +0.3
3,367,631 - OH686_16110 0.19 -1.2
3,367,631 - OH686_16110 0.19 -0.2
3,367,631 - OH686_16110 0.19 +1.3
3,367,773 + OH686_16110 0.35 +1.0
3,367,774 - OH686_16110 0.35 +0.1
3,367,794 - OH686_16110 0.37 -1.1
3,367,859 + OH686_16110 0.45 +0.2
3,367,859 + OH686_16110 0.45 +0.2
3,367,859 + OH686_16110 0.45 -0.9
3,367,859 + OH686_16110 0.45 +0.4
3,367,860 - OH686_16110 0.45 -0.7
3,367,860 - OH686_16110 0.45 -0.5
3,367,960 + OH686_16110 0.56 +1.5
3,367,960 + OH686_16110 0.56 +0.3
3,367,960 + OH686_16110 0.56 -0.5
3,367,960 + OH686_16110 0.56 +0.6
3,367,960 + OH686_16110 0.56 +0.8
3,367,961 - OH686_16110 0.56 -0.5
3,367,961 - OH686_16110 0.56 -0.1

Or see this region's nucleotide sequence