Strain Fitness in Pseudomonas sp. S08-1 around OH686_15215

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_15210 and OH686_15215 are separated by 181 nucleotidesOH686_15215 and OH686_15220 are separated by 45 nucleotidesOH686_15220 and OH686_15225 are separated by 400 nucleotides OH686_15210: OH686_15210 - Peptidase, M23/M37 family, at 3,190,628 to 3,192,031 _15210 OH686_15215: OH686_15215 - tyrosine--tRNA ligase, at 3,192,213 to 3,193,412 _15215 OH686_15220: OH686_15220 - CDS, at 3,193,458 to 3,193,583 _15220 OH686_15225: OH686_15225 - 16S ribosomal RNA' product='16S ribosomal RNA, at 3,193,984 to 3,195,515 _15225 Position (kb) 3192 3193 3194Strain fitness (log2 ratio) -3 -2 -1 0 1at 3192.062 kb on - strandat 3192.076 kb on + strandat 3192.092 kb on + strandat 3192.092 kb on + strandat 3192.092 kb on + strandat 3192.093 kb on - strandat 3192.093 kb on - strandat 3192.140 kb on + strandat 3192.140 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.149 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strandat 3192.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,192,062 - -0.3
3,192,076 + -0.8
3,192,092 + -2.8
3,192,092 + -1.6
3,192,092 + -0.2
3,192,093 - -0.4
3,192,093 - -1.3
3,192,140 + -0.4
3,192,140 + +0.2
3,192,149 + +0.2
3,192,149 + -0.2
3,192,149 + +0.0
3,192,149 + -0.0
3,192,149 + -0.6
3,192,149 + -0.1
3,192,149 + +0.4
3,192,168 + +0.9
3,192,168 + -0.1
3,192,168 + +0.5
3,192,168 + -2.2
3,192,168 + +0.6
3,192,168 + -1.6
3,192,168 + -0.0
3,192,168 + -0.6

Or see this region's nucleotide sequence