Strain Fitness in Pseudomonas sp. S08-1 around OH686_10795

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_10790 and OH686_10795 are separated by 70 nucleotidesOH686_10795 and OH686_10800 are separated by 108 nucleotides OH686_10790: OH686_10790 - methionine adenosyltransferase, at 2,218,664 to 2,219,854 _10790 OH686_10795: OH686_10795 - hypothetical protein, at 2,219,925 to 2,220,173 _10795 OH686_10800: OH686_10800 - DNA ligase (NAD(+)) , at 2,220,282 to 2,221,946 _10800 Position (kb) 2219 2220 2221Strain fitness (log2 ratio) -2 -1 0 1 2at 2219.852 kb on + strandat 2219.852 kb on + strandat 2219.852 kb on + strandat 2219.852 kb on + strandat 2219.852 kb on + strandat 2219.853 kb on - strandat 2219.853 kb on - strandat 2219.884 kb on + strandat 2219.884 kb on + strandat 2219.885 kb on - strandat 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.983 kb on + strand, within OH686_10795at 2219.984 kb on - strand, within OH686_10795at 2219.984 kb on - strand, within OH686_10795at 2219.984 kb on - strand, within OH686_10795at 2219.984 kb on - strand, within OH686_10795at 2219.984 kb on - strand, within OH686_10795at 2220.040 kb on + strand, within OH686_10795at 2220.040 kb on + strand, within OH686_10795at 2220.041 kb on - strand, within OH686_10795at 2220.041 kb on - strand, within OH686_10795at 2220.041 kb on - strand, within OH686_10795at 2220.041 kb on - strand, within OH686_10795at 2220.173 kb on + strandat 2220.173 kb on + strandat 2220.173 kb on + strandat 2220.174 kb on - strandat 2220.174 kb on - strandat 2220.174 kb on - strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.175 kb on + strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.176 kb on - strandat 2220.219 kb on - strandat 2220.236 kb on - strandat 2220.244 kb on + strandat 2220.244 kb on + strandat 2220.244 kb on + strandat 2220.244 kb on + strandat 2220.244 kb on + strandat 2220.244 kb on + strandat 2220.244 kb on + strandat 2220.244 kb on + strandat 2220.245 kb on - strandat 2220.245 kb on - strandat 2220.245 kb on - strandat 2220.245 kb on - strandat 2220.249 kb on + strandat 2220.250 kb on - strandat 2220.250 kb on - strandat 2220.250 kb on - strandat 2220.289 kb on - strandat 2220.302 kb on - strandat 2220.302 kb on - strandat 2220.420 kb on + strandat 2220.420 kb on + strandat 2220.420 kb on + strandat 2220.420 kb on + strandat 2220.420 kb on + strandat 2220.420 kb on + strandat 2220.420 kb on + strandat 2220.421 kb on - strandat 2220.421 kb on - strandat 2220.421 kb on - strandat 2220.459 kb on + strand, within OH686_10800at 2220.459 kb on + strand, within OH686_10800at 2220.459 kb on + strand, within OH686_10800at 2220.460 kb on - strand, within OH686_10800at 2220.460 kb on - strand, within OH686_10800at 2220.460 kb on - strand, within OH686_10800at 2220.460 kb on - strand, within OH686_10800at 2220.614 kb on - strand, within OH686_10800at 2220.687 kb on + strand, within OH686_10800at 2220.687 kb on + strand, within OH686_10800at 2220.688 kb on - strand, within OH686_10800at 2220.688 kb on - strand, within OH686_10800at 2220.688 kb on - strand, within OH686_10800at 2220.688 kb on - strand, within OH686_10800at 2220.809 kb on + strand, within OH686_10800at 2220.810 kb on - strand, within OH686_10800at 2220.810 kb on - strand, within OH686_10800at 2220.828 kb on + strand, within OH686_10800at 2220.828 kb on + strand, within OH686_10800at 2221.123 kb on + strand, within OH686_10800at 2221.124 kb on - strand, within OH686_10800at 2221.124 kb on - strand, within OH686_10800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,219,852 + -0.3
2,219,852 + +0.2
2,219,852 + -1.5
2,219,852 + +0.1
2,219,852 + -0.0
2,219,853 - +0.6
2,219,853 - +0.4
2,219,884 + +0.1
2,219,884 + -0.1
2,219,885 - +0.2
2,219,983 + OH686_10795 0.23 +2.0
2,219,983 + OH686_10795 0.23 +0.9
2,219,983 + OH686_10795 0.23 +0.1
2,219,983 + OH686_10795 0.23 -0.0
2,219,983 + OH686_10795 0.23 +1.4
2,219,983 + OH686_10795 0.23 +0.8
2,219,983 + OH686_10795 0.23 +0.0
2,219,983 + OH686_10795 0.23 +1.8
2,219,983 + OH686_10795 0.23 +0.0
2,219,983 + OH686_10795 0.23 -0.4
2,219,983 + OH686_10795 0.23 +0.5
2,219,983 + OH686_10795 0.23 +1.4
2,219,983 + OH686_10795 0.23 +0.0
2,219,984 - OH686_10795 0.24 -0.1
2,219,984 - OH686_10795 0.24 +0.6
2,219,984 - OH686_10795 0.24 +0.5
2,219,984 - OH686_10795 0.24 -1.0
2,219,984 - OH686_10795 0.24 -0.2
2,220,040 + OH686_10795 0.46 +0.1
2,220,040 + OH686_10795 0.46 +0.2
2,220,041 - OH686_10795 0.47 -0.6
2,220,041 - OH686_10795 0.47 -0.0
2,220,041 - OH686_10795 0.47 +0.6
2,220,041 - OH686_10795 0.47 -0.6
2,220,173 + +0.5
2,220,173 + -1.9
2,220,173 + +0.5
2,220,174 - -0.0
2,220,174 - -0.1
2,220,174 - -0.6
2,220,175 + -0.7
2,220,175 + +0.0
2,220,175 + -0.6
2,220,175 + +0.4
2,220,175 + +0.6
2,220,175 + +0.6
2,220,175 + +0.9
2,220,175 + -0.0
2,220,175 + +0.6
2,220,175 + +0.0
2,220,175 + +0.0
2,220,175 + -0.1
2,220,175 + -0.6
2,220,175 + +0.2
2,220,175 + +0.2
2,220,175 + -0.5
2,220,175 + -0.6
2,220,175 + +0.8
2,220,175 + -0.5
2,220,175 + +0.2
2,220,175 + -0.4
2,220,175 + -0.2
2,220,175 + +0.2
2,220,175 + +0.1
2,220,175 + +0.6
2,220,175 + -0.6
2,220,175 + +0.4
2,220,175 + -1.1
2,220,175 + -0.1
2,220,175 + -0.2
2,220,175 + -0.8
2,220,175 + +1.9
2,220,175 + -0.3
2,220,175 + -0.3
2,220,175 + -0.0
2,220,175 + +0.6
2,220,176 - +0.3
2,220,176 - -0.1
2,220,176 - -0.0
2,220,176 - +0.6
2,220,176 - -0.9
2,220,176 - +1.5
2,220,176 - -0.5
2,220,176 - -2.0
2,220,176 - +0.7
2,220,176 - +0.5
2,220,176 - -0.0
2,220,176 - -0.1
2,220,176 - -0.1
2,220,176 - +1.1
2,220,176 - +0.0
2,220,176 - +0.4
2,220,176 - +0.1
2,220,176 - +1.0
2,220,176 - -0.4
2,220,176 - +1.2
2,220,176 - -0.5
2,220,176 - -0.2
2,220,176 - +0.0
2,220,176 - +0.1
2,220,176 - -0.6
2,220,176 - -0.7
2,220,176 - -0.4
2,220,176 - +1.1
2,220,176 - +0.2
2,220,219 - -1.4
2,220,236 - -0.5
2,220,244 + -0.2
2,220,244 + +0.8
2,220,244 + +1.1
2,220,244 + -0.2
2,220,244 + -0.1
2,220,244 + +0.1
2,220,244 + +0.5
2,220,244 + -0.8
2,220,245 - +0.7
2,220,245 - +0.1
2,220,245 - +0.2
2,220,245 - -0.9
2,220,249 + -0.2
2,220,250 - +0.5
2,220,250 - -0.0
2,220,250 - +1.1
2,220,289 - -0.3
2,220,302 - -0.2
2,220,302 - +0.3
2,220,420 + +0.3
2,220,420 + -0.5
2,220,420 + +1.5
2,220,420 + -0.3
2,220,420 + -0.7
2,220,420 + +0.5
2,220,420 + +0.1
2,220,421 - +0.5
2,220,421 - +0.5
2,220,421 - +0.6
2,220,459 + OH686_10800 0.11 -0.3
2,220,459 + OH686_10800 0.11 +0.4
2,220,459 + OH686_10800 0.11 +0.2
2,220,460 - OH686_10800 0.11 +1.0
2,220,460 - OH686_10800 0.11 -0.1
2,220,460 - OH686_10800 0.11 +1.0
2,220,460 - OH686_10800 0.11 -0.1
2,220,614 - OH686_10800 0.20 -0.1
2,220,687 + OH686_10800 0.24 +0.5
2,220,687 + OH686_10800 0.24 -0.4
2,220,688 - OH686_10800 0.24 +0.9
2,220,688 - OH686_10800 0.24 +0.7
2,220,688 - OH686_10800 0.24 -0.3
2,220,688 - OH686_10800 0.24 -1.2
2,220,809 + OH686_10800 0.32 -0.3
2,220,810 - OH686_10800 0.32 +0.4
2,220,810 - OH686_10800 0.32 +0.7
2,220,828 + OH686_10800 0.33 +0.2
2,220,828 + OH686_10800 0.33 +0.8
2,221,123 + OH686_10800 0.51 +0.2
2,221,124 - OH686_10800 0.51 +0.5
2,221,124 - OH686_10800 0.51 +0.2

Or see this region's nucleotide sequence