Strain Fitness in Pseudomonas sp. S08-1 around OH686_07965

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07955 and OH686_07960 are separated by 37 nucleotidesOH686_07960 and OH686_07965 are separated by 37 nucleotidesOH686_07965 and OH686_07970 are separated by 146 nucleotidesOH686_07970 and OH686_07975 are separated by 74 nucleotidesOH686_07975 and OH686_07980 overlap by 8 nucleotides OH686_07955: OH686_07955 - ribosomal protein L25, Ctc-form, at 1,623,361 to 1,623,957 _07955 OH686_07960: OH686_07960 - aminoacyl-tRNA hydrolase, at 1,623,995 to 1,624,579 _07960 OH686_07965: OH686_07965 - GTP-binding and nucleic acid-binding protein YchF, at 1,624,617 to 1,625,717 _07965 OH686_07970: OH686_07970 - tRNA-Met, at 1,625,864 to 1,625,940 _07970 OH686_07975: OH686_07975 - Cell filamentation protein fic, at 1,626,015 to 1,626,617 _07975 OH686_07980: OH686_07980 - hypothetical protein' product='hypothetical protein, at 1,626,610 to 1,626,780 _07980 Position (kb) 1624 1625 1626Strain fitness (log2 ratio) -2 -1 0 1 2at 1623.816 kb on + strand, within OH686_07955at 1623.955 kb on + strandat 1623.955 kb on + strandat 1623.955 kb on + strandat 1623.956 kb on - strandat 1623.979 kb on + strandat 1623.979 kb on + strandat 1624.611 kb on + strandat 1624.612 kb on - strandat 1624.895 kb on + strand, within OH686_07965at 1625.232 kb on + strand, within OH686_07965at 1625.232 kb on + strand, within OH686_07965at 1625.232 kb on + strand, within OH686_07965at 1625.232 kb on + strand, within OH686_07965at 1625.232 kb on + strand, within OH686_07965at 1625.232 kb on + strand, within OH686_07965at 1625.232 kb on + strand, within OH686_07965at 1625.232 kb on + strand, within OH686_07965at 1625.233 kb on - strand, within OH686_07965at 1625.233 kb on - strand, within OH686_07965at 1625.233 kb on - strand, within OH686_07965at 1625.233 kb on - strand, within OH686_07965at 1625.233 kb on - strand, within OH686_07965at 1625.233 kb on - strand, within OH686_07965at 1625.233 kb on - strand, within OH686_07965at 1625.469 kb on + strand, within OH686_07965at 1625.469 kb on + strand, within OH686_07965at 1625.469 kb on + strand, within OH686_07965at 1625.469 kb on + strand, within OH686_07965at 1625.470 kb on - strand, within OH686_07965at 1625.470 kb on - strand, within OH686_07965at 1625.470 kb on - strand, within OH686_07965at 1625.470 kb on - strand, within OH686_07965at 1625.470 kb on - strand, within OH686_07965at 1625.510 kb on - strand, within OH686_07965at 1625.510 kb on - strand, within OH686_07965at 1625.510 kb on - strand, within OH686_07965at 1625.587 kb on + strand, within OH686_07965at 1625.587 kb on + strand, within OH686_07965at 1625.587 kb on + strand, within OH686_07965at 1625.587 kb on + strand, within OH686_07965at 1625.588 kb on - strand, within OH686_07965at 1625.595 kb on + strand, within OH686_07965at 1625.596 kb on - strand, within OH686_07965at 1625.670 kb on + strandat 1625.670 kb on + strandat 1625.670 kb on + strandat 1625.671 kb on - strandat 1625.671 kb on - strandat 1625.671 kb on - strandat 1625.671 kb on - strandat 1625.671 kb on - strandat 1625.715 kb on + strandat 1625.715 kb on + strandat 1625.715 kb on + strandat 1625.715 kb on + strandat 1625.715 kb on + strandat 1625.716 kb on - strandat 1625.716 kb on - strandat 1625.716 kb on - strandat 1625.716 kb on - strandat 1625.784 kb on + strandat 1625.785 kb on - strandat 1625.967 kb on - strandat 1626.054 kb on + strandat 1626.054 kb on + strandat 1626.054 kb on + strandat 1626.055 kb on - strandat 1626.055 kb on - strandat 1626.055 kb on - strandat 1626.055 kb on - strandat 1626.055 kb on - strandat 1626.055 kb on - strandat 1626.055 kb on - strandat 1626.055 kb on - strandat 1626.099 kb on - strand, within OH686_07975at 1626.156 kb on - strand, within OH686_07975at 1626.235 kb on + strand, within OH686_07975at 1626.235 kb on + strand, within OH686_07975at 1626.236 kb on - strand, within OH686_07975at 1626.236 kb on - strand, within OH686_07975at 1626.255 kb on + strand, within OH686_07975at 1626.256 kb on - strand, within OH686_07975at 1626.256 kb on - strand, within OH686_07975at 1626.293 kb on + strand, within OH686_07975at 1626.293 kb on + strand, within OH686_07975at 1626.294 kb on - strand, within OH686_07975at 1626.294 kb on - strand, within OH686_07975at 1626.294 kb on - strand, within OH686_07975at 1626.294 kb on - strand, within OH686_07975at 1626.335 kb on + strand, within OH686_07975at 1626.336 kb on - strand, within OH686_07975at 1626.359 kb on + strand, within OH686_07975at 1626.360 kb on - strand, within OH686_07975at 1626.360 kb on - strand, within OH686_07975at 1626.387 kb on + strand, within OH686_07975at 1626.387 kb on + strand, within OH686_07975at 1626.387 kb on + strand, within OH686_07975at 1626.387 kb on + strand, within OH686_07975at 1626.387 kb on + strand, within OH686_07975at 1626.388 kb on - strand, within OH686_07975at 1626.388 kb on - strand, within OH686_07975at 1626.388 kb on - strand, within OH686_07975at 1626.388 kb on - strand, within OH686_07975at 1626.388 kb on - strand, within OH686_07975at 1626.388 kb on - strand, within OH686_07975at 1626.434 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.443 kb on + strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.444 kb on - strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.445 kb on + strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.446 kb on - strand, within OH686_07975at 1626.447 kb on - strand, within OH686_07975at 1626.486 kb on + strand, within OH686_07975at 1626.486 kb on + strand, within OH686_07975at 1626.486 kb on + strand, within OH686_07975at 1626.486 kb on + strand, within OH686_07975at 1626.487 kb on - strand, within OH686_07975at 1626.487 kb on - strand, within OH686_07975at 1626.487 kb on - strand, within OH686_07975at 1626.487 kb on - strand, within OH686_07975at 1626.487 kb on - strand, within OH686_07975at 1626.566 kb on + strandat 1626.566 kb on + strandat 1626.566 kb on + strandat 1626.567 kb on - strandat 1626.567 kb on - strandat 1626.567 kb on - strandat 1626.567 kb on - strandat 1626.567 kb on - strandat 1626.567 kb on - strandat 1626.577 kb on + strandat 1626.578 kb on - strandat 1626.599 kb on + strandat 1626.599 kb on + strandat 1626.600 kb on - strandat 1626.604 kb on + strandat 1626.604 kb on + strandat 1626.604 kb on + strandat 1626.604 kb on + strandat 1626.604 kb on + strandat 1626.605 kb on - strandat 1626.605 kb on - strandat 1626.605 kb on - strandat 1626.605 kb on - strandat 1626.605 kb on - strandat 1626.605 kb on - strandat 1626.605 kb on - strandat 1626.666 kb on + strand, within OH686_07980at 1626.666 kb on + strand, within OH686_07980

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,623,816 + OH686_07955 0.76 -0.8
1,623,955 + +0.1
1,623,955 + +0.1
1,623,955 + +1.0
1,623,956 - -0.2
1,623,979 + +0.8
1,623,979 + -0.4
1,624,611 + +1.8
1,624,612 - -1.0
1,624,895 + OH686_07965 0.25 -1.0
1,625,232 + OH686_07965 0.56 +0.8
1,625,232 + OH686_07965 0.56 -1.0
1,625,232 + OH686_07965 0.56 +0.2
1,625,232 + OH686_07965 0.56 +0.5
1,625,232 + OH686_07965 0.56 +0.8
1,625,232 + OH686_07965 0.56 -0.8
1,625,232 + OH686_07965 0.56 -1.0
1,625,232 + OH686_07965 0.56 -0.5
1,625,233 - OH686_07965 0.56 -1.6
1,625,233 - OH686_07965 0.56 -1.3
1,625,233 - OH686_07965 0.56 -0.6
1,625,233 - OH686_07965 0.56 -1.0
1,625,233 - OH686_07965 0.56 +0.8
1,625,233 - OH686_07965 0.56 -1.0
1,625,233 - OH686_07965 0.56 -0.2
1,625,469 + OH686_07965 0.77 +0.8
1,625,469 + OH686_07965 0.77 +0.4
1,625,469 + OH686_07965 0.77 +0.4
1,625,469 + OH686_07965 0.77 -1.2
1,625,470 - OH686_07965 0.77 -0.8
1,625,470 - OH686_07965 0.77 +0.5
1,625,470 - OH686_07965 0.77 -0.2
1,625,470 - OH686_07965 0.77 -0.2
1,625,470 - OH686_07965 0.77 -1.6
1,625,510 - OH686_07965 0.81 -0.8
1,625,510 - OH686_07965 0.81 -1.2
1,625,510 - OH686_07965 0.81 -0.5
1,625,587 + OH686_07965 0.88 -0.8
1,625,587 + OH686_07965 0.88 +0.4
1,625,587 + OH686_07965 0.88 +0.2
1,625,587 + OH686_07965 0.88 -1.5
1,625,588 - OH686_07965 0.88 +1.1
1,625,595 + OH686_07965 0.89 -2.0
1,625,596 - OH686_07965 0.89 +0.6
1,625,670 + -0.5
1,625,670 + -1.0
1,625,670 + -0.2
1,625,671 - -0.8
1,625,671 - -1.9
1,625,671 - -0.8
1,625,671 - +0.5
1,625,671 - -0.8
1,625,715 + +0.1
1,625,715 + +0.6
1,625,715 + -0.8
1,625,715 + -0.0
1,625,715 + -1.2
1,625,716 - -0.7
1,625,716 - -0.2
1,625,716 - +0.2
1,625,716 - -0.9
1,625,784 + -0.2
1,625,785 - -0.2
1,625,967 - -0.9
1,626,054 + -0.9
1,626,054 + +0.5
1,626,054 + -1.0
1,626,055 - -0.2
1,626,055 - +0.0
1,626,055 - +0.5
1,626,055 - -0.7
1,626,055 - -0.4
1,626,055 - +0.6
1,626,055 - -0.7
1,626,055 - -0.2
1,626,099 - OH686_07975 0.14 -0.5
1,626,156 - OH686_07975 0.23 -1.3
1,626,235 + OH686_07975 0.36 -1.2
1,626,235 + OH686_07975 0.36 +1.5
1,626,236 - OH686_07975 0.37 +0.9
1,626,236 - OH686_07975 0.37 -0.4
1,626,255 + OH686_07975 0.40 -0.7
1,626,256 - OH686_07975 0.40 -0.0
1,626,256 - OH686_07975 0.40 -0.5
1,626,293 + OH686_07975 0.46 -0.6
1,626,293 + OH686_07975 0.46 +0.5
1,626,294 - OH686_07975 0.46 +0.8
1,626,294 - OH686_07975 0.46 +0.0
1,626,294 - OH686_07975 0.46 -0.0
1,626,294 - OH686_07975 0.46 +0.2
1,626,335 + OH686_07975 0.53 -0.1
1,626,336 - OH686_07975 0.53 -0.6
1,626,359 + OH686_07975 0.57 -0.3
1,626,360 - OH686_07975 0.57 -0.1
1,626,360 - OH686_07975 0.57 +0.6
1,626,387 + OH686_07975 0.62 +0.3
1,626,387 + OH686_07975 0.62 -1.9
1,626,387 + OH686_07975 0.62 -0.3
1,626,387 + OH686_07975 0.62 +0.1
1,626,387 + OH686_07975 0.62 -0.2
1,626,388 - OH686_07975 0.62 -0.3
1,626,388 - OH686_07975 0.62 +0.0
1,626,388 - OH686_07975 0.62 +0.0
1,626,388 - OH686_07975 0.62 -0.1
1,626,388 - OH686_07975 0.62 -0.2
1,626,388 - OH686_07975 0.62 +0.3
1,626,434 + OH686_07975 0.69 -1.1
1,626,443 + OH686_07975 0.71 +0.2
1,626,443 + OH686_07975 0.71 +0.7
1,626,443 + OH686_07975 0.71 +0.8
1,626,443 + OH686_07975 0.71 +0.1
1,626,443 + OH686_07975 0.71 +0.1
1,626,443 + OH686_07975 0.71 +0.1
1,626,443 + OH686_07975 0.71 +0.4
1,626,443 + OH686_07975 0.71 -0.2
1,626,443 + OH686_07975 0.71 +0.7
1,626,444 - OH686_07975 0.71 -0.3
1,626,444 - OH686_07975 0.71 +0.2
1,626,444 - OH686_07975 0.71 +0.3
1,626,444 - OH686_07975 0.71 +1.0
1,626,444 - OH686_07975 0.71 -0.4
1,626,444 - OH686_07975 0.71 -0.4
1,626,444 - OH686_07975 0.71 -1.6
1,626,444 - OH686_07975 0.71 -1.3
1,626,444 - OH686_07975 0.71 +0.5
1,626,444 - OH686_07975 0.71 +0.1
1,626,444 - OH686_07975 0.71 -0.3
1,626,444 - OH686_07975 0.71 -0.9
1,626,444 - OH686_07975 0.71 +0.2
1,626,444 - OH686_07975 0.71 -0.3
1,626,444 - OH686_07975 0.71 +0.7
1,626,444 - OH686_07975 0.71 +1.1
1,626,445 + OH686_07975 0.71 +0.0
1,626,445 + OH686_07975 0.71 +0.4
1,626,445 + OH686_07975 0.71 -0.0
1,626,445 + OH686_07975 0.71 +0.1
1,626,445 + OH686_07975 0.71 +0.2
1,626,445 + OH686_07975 0.71 -0.0
1,626,445 + OH686_07975 0.71 -0.8
1,626,445 + OH686_07975 0.71 +0.1
1,626,445 + OH686_07975 0.71 -1.4
1,626,445 + OH686_07975 0.71 +1.4
1,626,445 + OH686_07975 0.71 -0.9
1,626,445 + OH686_07975 0.71 -0.7
1,626,446 - OH686_07975 0.71 -0.4
1,626,446 - OH686_07975 0.71 +0.0
1,626,446 - OH686_07975 0.71 -0.3
1,626,446 - OH686_07975 0.71 +0.3
1,626,446 - OH686_07975 0.71 -0.1
1,626,446 - OH686_07975 0.71 -0.2
1,626,446 - OH686_07975 0.71 -0.2
1,626,446 - OH686_07975 0.71 +0.1
1,626,446 - OH686_07975 0.71 +0.3
1,626,447 - OH686_07975 0.72 -0.2
1,626,486 + OH686_07975 0.78 +0.2
1,626,486 + OH686_07975 0.78 +0.8
1,626,486 + OH686_07975 0.78 +0.6
1,626,486 + OH686_07975 0.78 -0.1
1,626,487 - OH686_07975 0.78 +0.0
1,626,487 - OH686_07975 0.78 -0.2
1,626,487 - OH686_07975 0.78 +1.1
1,626,487 - OH686_07975 0.78 -0.0
1,626,487 - OH686_07975 0.78 -0.5
1,626,566 + -0.5
1,626,566 + -0.8
1,626,566 + -0.5
1,626,567 - -0.3
1,626,567 - +0.5
1,626,567 - +0.5
1,626,567 - -0.3
1,626,567 - +1.2
1,626,567 - -0.2
1,626,577 + +0.6
1,626,578 - -1.0
1,626,599 + +1.1
1,626,599 + +0.3
1,626,600 - -0.3
1,626,604 + -0.4
1,626,604 + +1.1
1,626,604 + +0.4
1,626,604 + -0.3
1,626,604 + +2.3
1,626,605 - -0.7
1,626,605 - -0.3
1,626,605 - -0.2
1,626,605 - +0.2
1,626,605 - +0.5
1,626,605 - -0.2
1,626,605 - -0.0
1,626,666 + OH686_07980 0.33 +0.1
1,626,666 + OH686_07980 0.33 -1.5

Or see this region's nucleotide sequence