Strain Fitness in Pseudomonas sp. S08-1 around OH686_07200

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_07195 and OH686_07200 are separated by 95 nucleotidesOH686_07200 and OH686_07205 are separated by 1 nucleotidesOH686_07205 and OH686_07210 are separated by 57 nucleotides OH686_07195: OH686_07195 - Transcriptional regulator ArgP, LysR family, at 1,465,311 to 1,466,195 _07195 OH686_07200: OH686_07200 - hypothetical protein, at 1,466,291 to 1,466,692 _07200 OH686_07205: OH686_07205 - Arginine exporter protein ArgO, at 1,466,694 to 1,467,302 _07205 OH686_07210: OH686_07210 - hypothetical protein, at 1,467,360 to 1,468,202 _07210 Position (kb) 1466 1467Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1465.298 kb on + strandat 1465.298 kb on + strandat 1465.298 kb on + strandat 1465.298 kb on + strandat 1465.298 kb on + strandat 1465.298 kb on + strandat 1465.298 kb on + strandat 1465.299 kb on - strandat 1465.299 kb on - strandat 1465.299 kb on - strandat 1465.305 kb on + strandat 1465.305 kb on + strandat 1465.305 kb on + strandat 1465.305 kb on + strandat 1465.305 kb on + strandat 1465.305 kb on + strandat 1465.305 kb on + strandat 1465.305 kb on + strandat 1465.306 kb on - strandat 1465.306 kb on - strandat 1465.306 kb on - strandat 1465.306 kb on - strandat 1465.306 kb on - strandat 1465.306 kb on - strandat 1465.361 kb on + strandat 1465.361 kb on + strandat 1465.362 kb on - strandat 1465.362 kb on - strandat 1465.362 kb on - strandat 1465.396 kb on + strandat 1465.396 kb on + strandat 1465.396 kb on + strandat 1465.396 kb on + strandat 1465.396 kb on + strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.397 kb on - strandat 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.404 kb on + strand, within OH686_07195at 1465.405 kb on - strand, within OH686_07195at 1465.405 kb on - strand, within OH686_07195at 1465.405 kb on - strand, within OH686_07195at 1465.405 kb on - strand, within OH686_07195at 1465.405 kb on - strand, within OH686_07195at 1465.405 kb on - strand, within OH686_07195at 1465.405 kb on - strand, within OH686_07195at 1465.405 kb on - strand, within OH686_07195at 1465.550 kb on + strand, within OH686_07195at 1465.550 kb on + strand, within OH686_07195at 1465.551 kb on - strand, within OH686_07195at 1465.551 kb on - strand, within OH686_07195at 1465.551 kb on - strand, within OH686_07195at 1465.582 kb on + strand, within OH686_07195at 1465.583 kb on - strand, within OH686_07195at 1465.761 kb on + strand, within OH686_07195at 1465.761 kb on + strand, within OH686_07195at 1465.762 kb on - strand, within OH686_07195at 1465.762 kb on - strand, within OH686_07195at 1466.483 kb on + strand, within OH686_07200at 1466.483 kb on + strand, within OH686_07200at 1466.484 kb on - strand, within OH686_07200at 1466.489 kb on + strand, within OH686_07200at 1466.489 kb on + strand, within OH686_07200at 1466.489 kb on + strand, within OH686_07200at 1466.489 kb on + strand, within OH686_07200at 1466.490 kb on - strand, within OH686_07200at 1466.490 kb on - strand, within OH686_07200at 1466.490 kb on - strand, within OH686_07200at 1466.490 kb on - strand, within OH686_07200at 1466.490 kb on - strand, within OH686_07200at 1466.490 kb on - strand, within OH686_07200at 1466.490 kb on - strand, within OH686_07200at 1466.606 kb on + strand, within OH686_07200at 1466.706 kb on + strandat 1466.706 kb on + strandat 1466.707 kb on - strandat 1466.707 kb on - strandat 1466.707 kb on - strandat 1466.707 kb on - strandat 1466.857 kb on + strand, within OH686_07205at 1466.858 kb on - strand, within OH686_07205at 1466.983 kb on + strand, within OH686_07205at 1466.983 kb on + strand, within OH686_07205at 1466.984 kb on - strand, within OH686_07205at 1467.066 kb on + strand, within OH686_07205at 1467.066 kb on + strand, within OH686_07205at 1467.066 kb on + strand, within OH686_07205at 1467.066 kb on + strand, within OH686_07205at 1467.066 kb on + strand, within OH686_07205at 1467.066 kb on + strand, within OH686_07205at 1467.066 kb on + strand, within OH686_07205at 1467.067 kb on - strand, within OH686_07205at 1467.067 kb on - strand, within OH686_07205at 1467.067 kb on - strand, within OH686_07205at 1467.067 kb on - strand, within OH686_07205at 1467.067 kb on - strand, within OH686_07205at 1467.322 kb on + strandat 1467.365 kb on + strandat 1467.365 kb on + strandat 1467.365 kb on + strandat 1467.366 kb on - strandat 1467.366 kb on - strandat 1467.366 kb on - strandat 1467.540 kb on + strand, within OH686_07210at 1467.540 kb on + strand, within OH686_07210at 1467.540 kb on + strand, within OH686_07210at 1467.541 kb on - strand, within OH686_07210at 1467.541 kb on - strand, within OH686_07210at 1467.541 kb on - strand, within OH686_07210at 1467.541 kb on - strand, within OH686_07210at 1467.573 kb on + strand, within OH686_07210at 1467.573 kb on + strand, within OH686_07210at 1467.574 kb on - strand, within OH686_07210at 1467.597 kb on + strand, within OH686_07210at 1467.598 kb on - strand, within OH686_07210

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,465,298 + +0.8
1,465,298 + -0.4
1,465,298 + +0.1
1,465,298 + +0.4
1,465,298 + -0.2
1,465,298 + +0.2
1,465,298 + -0.8
1,465,299 - -0.4
1,465,299 - -0.1
1,465,299 - -0.8
1,465,305 + -0.1
1,465,305 + +0.6
1,465,305 + -0.8
1,465,305 + -0.1
1,465,305 + +0.5
1,465,305 + +0.9
1,465,305 + +1.0
1,465,305 + +0.7
1,465,306 - +1.5
1,465,306 - +0.8
1,465,306 - +0.5
1,465,306 - +0.3
1,465,306 - +0.5
1,465,306 - -2.0
1,465,361 + -1.6
1,465,361 + -0.7
1,465,362 - -0.6
1,465,362 - +0.1
1,465,362 - +0.6
1,465,396 + -0.2
1,465,396 + +0.0
1,465,396 + -0.9
1,465,396 + +0.1
1,465,396 + +0.3
1,465,397 - -1.0
1,465,397 - +0.8
1,465,397 - +0.8
1,465,397 - -0.9
1,465,397 - -0.0
1,465,397 - -1.4
1,465,397 - -0.9
1,465,397 - -0.9
1,465,397 - +1.3
1,465,397 - -0.2
1,465,397 - -0.6
1,465,397 - -0.4
1,465,397 - -0.1
1,465,404 + OH686_07195 0.11 +0.8
1,465,404 + OH686_07195 0.11 +0.5
1,465,404 + OH686_07195 0.11 -2.8
1,465,404 + OH686_07195 0.11 +1.2
1,465,404 + OH686_07195 0.11 -0.3
1,465,404 + OH686_07195 0.11 -0.7
1,465,404 + OH686_07195 0.11 -1.4
1,465,404 + OH686_07195 0.11 +0.6
1,465,404 + OH686_07195 0.11 -0.2
1,465,404 + OH686_07195 0.11 -0.8
1,465,405 - OH686_07195 0.11 -0.2
1,465,405 - OH686_07195 0.11 -1.0
1,465,405 - OH686_07195 0.11 +0.4
1,465,405 - OH686_07195 0.11 +0.5
1,465,405 - OH686_07195 0.11 -0.7
1,465,405 - OH686_07195 0.11 -0.8
1,465,405 - OH686_07195 0.11 +0.3
1,465,405 - OH686_07195 0.11 +0.8
1,465,550 + OH686_07195 0.27 +0.0
1,465,550 + OH686_07195 0.27 +0.4
1,465,551 - OH686_07195 0.27 +1.2
1,465,551 - OH686_07195 0.27 +1.0
1,465,551 - OH686_07195 0.27 -0.1
1,465,582 + OH686_07195 0.31 -0.6
1,465,583 - OH686_07195 0.31 -0.4
1,465,761 + OH686_07195 0.51 -0.4
1,465,761 + OH686_07195 0.51 -0.7
1,465,762 - OH686_07195 0.51 -1.3
1,465,762 - OH686_07195 0.51 +0.1
1,466,483 + OH686_07200 0.48 +0.2
1,466,483 + OH686_07200 0.48 -0.6
1,466,484 - OH686_07200 0.48 -0.9
1,466,489 + OH686_07200 0.49 -0.2
1,466,489 + OH686_07200 0.49 -0.3
1,466,489 + OH686_07200 0.49 -0.0
1,466,489 + OH686_07200 0.49 +0.3
1,466,490 - OH686_07200 0.50 +0.3
1,466,490 - OH686_07200 0.50 +0.3
1,466,490 - OH686_07200 0.50 +0.8
1,466,490 - OH686_07200 0.50 +0.7
1,466,490 - OH686_07200 0.50 -2.3
1,466,490 - OH686_07200 0.50 -0.5
1,466,490 - OH686_07200 0.50 +1.9
1,466,606 + OH686_07200 0.78 -1.0
1,466,706 + +0.4
1,466,706 + -0.8
1,466,707 - +0.6
1,466,707 - -1.3
1,466,707 - -0.4
1,466,707 - -0.7
1,466,857 + OH686_07205 0.27 -1.3
1,466,858 - OH686_07205 0.27 -0.5
1,466,983 + OH686_07205 0.47 -0.3
1,466,983 + OH686_07205 0.47 +0.5
1,466,984 - OH686_07205 0.48 -0.6
1,467,066 + OH686_07205 0.61 -0.1
1,467,066 + OH686_07205 0.61 +0.4
1,467,066 + OH686_07205 0.61 -0.2
1,467,066 + OH686_07205 0.61 +0.5
1,467,066 + OH686_07205 0.61 -0.7
1,467,066 + OH686_07205 0.61 -0.0
1,467,066 + OH686_07205 0.61 +0.3
1,467,067 - OH686_07205 0.61 -0.4
1,467,067 - OH686_07205 0.61 -1.3
1,467,067 - OH686_07205 0.61 -0.3
1,467,067 - OH686_07205 0.61 -0.6
1,467,067 - OH686_07205 0.61 +1.0
1,467,322 + +0.2
1,467,365 + +1.3
1,467,365 + -0.3
1,467,365 + -0.5
1,467,366 - -0.5
1,467,366 - -0.1
1,467,366 - +0.2
1,467,540 + OH686_07210 0.21 +0.5
1,467,540 + OH686_07210 0.21 +0.3
1,467,540 + OH686_07210 0.21 -0.6
1,467,541 - OH686_07210 0.21 -0.4
1,467,541 - OH686_07210 0.21 -0.0
1,467,541 - OH686_07210 0.21 +0.4
1,467,541 - OH686_07210 0.21 -0.3
1,467,573 + OH686_07210 0.25 +0.3
1,467,573 + OH686_07210 0.25 -0.4
1,467,574 - OH686_07210 0.25 +0.0
1,467,597 + OH686_07210 0.28 -0.1
1,467,598 - OH686_07210 0.28 +0.5

Or see this region's nucleotide sequence