Strain Fitness in Pseudomonas sp. S08-1 around OH686_05675

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_05670 and OH686_05675 are separated by 65 nucleotidesOH686_05675 and OH686_05680 are separated by 450 nucleotides OH686_05670: OH686_05670 - hypothetical protein, at 1,143,018 to 1,143,761 _05670 OH686_05675: OH686_05675 - hypothetical protein, at 1,143,827 to 1,144,174 _05675 OH686_05680: OH686_05680 - hypothetical protein, at 1,144,625 to 1,146,709 _05680 Position (kb) 1143 1144 1145Strain fitness (log2 ratio) -2 -1 0 1at 1143.031 kb on + strandat 1143.032 kb on - strandat 1143.032 kb on - strandat 1143.032 kb on - strandat 1143.061 kb on + strandat 1143.062 kb on - strandat 1143.062 kb on - strandat 1143.062 kb on - strandat 1143.319 kb on + strand, within OH686_05670at 1143.319 kb on + strand, within OH686_05670at 1143.319 kb on + strand, within OH686_05670at 1143.319 kb on + strand, within OH686_05670at 1143.319 kb on + strand, within OH686_05670at 1143.319 kb on + strand, within OH686_05670at 1143.319 kb on + strand, within OH686_05670at 1143.319 kb on + strand, within OH686_05670at 1143.319 kb on + strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.320 kb on - strand, within OH686_05670at 1143.409 kb on + strand, within OH686_05670at 1143.409 kb on + strand, within OH686_05670at 1143.409 kb on + strand, within OH686_05670at 1143.409 kb on + strand, within OH686_05670at 1143.409 kb on + strand, within OH686_05670at 1143.409 kb on + strand, within OH686_05670at 1143.410 kb on - strand, within OH686_05670at 1143.410 kb on - strand, within OH686_05670at 1143.410 kb on - strand, within OH686_05670at 1143.416 kb on + strand, within OH686_05670at 1143.416 kb on + strand, within OH686_05670at 1143.416 kb on + strand, within OH686_05670at 1143.416 kb on + strand, within OH686_05670at 1143.416 kb on + strand, within OH686_05670at 1143.416 kb on + strand, within OH686_05670at 1143.417 kb on - strand, within OH686_05670at 1143.417 kb on - strand, within OH686_05670at 1143.417 kb on - strand, within OH686_05670at 1143.483 kb on + strand, within OH686_05670at 1143.514 kb on + strand, within OH686_05670at 1143.515 kb on - strand, within OH686_05670at 1143.515 kb on - strand, within OH686_05670at 1143.524 kb on + strand, within OH686_05670at 1143.525 kb on - strand, within OH686_05670at 1143.837 kb on + strandat 1143.838 kb on - strandat 1143.936 kb on + strand, within OH686_05675at 1143.936 kb on + strand, within OH686_05675at 1143.937 kb on - strand, within OH686_05675at 1143.937 kb on - strand, within OH686_05675at 1143.937 kb on - strand, within OH686_05675at 1144.188 kb on + strandat 1144.189 kb on - strandat 1144.192 kb on + strandat 1144.193 kb on - strandat 1144.193 kb on - strandat 1144.212 kb on - strandat 1144.500 kb on + strandat 1144.526 kb on + strandat 1144.527 kb on - strandat 1144.588 kb on - strandat 1144.698 kb on + strandat 1144.991 kb on - strand, within OH686_05680at 1145.038 kb on - strand, within OH686_05680at 1145.165 kb on - strand, within OH686_05680at 1145.171 kb on + strand, within OH686_05680

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,143,031 + +0.2
1,143,032 - -0.5
1,143,032 - -1.2
1,143,032 - +0.0
1,143,061 + -1.8
1,143,062 - -1.3
1,143,062 - +0.7
1,143,062 - +0.2
1,143,319 + OH686_05670 0.40 +0.5
1,143,319 + OH686_05670 0.40 -0.1
1,143,319 + OH686_05670 0.40 -0.8
1,143,319 + OH686_05670 0.40 -0.2
1,143,319 + OH686_05670 0.40 -0.6
1,143,319 + OH686_05670 0.40 +0.6
1,143,319 + OH686_05670 0.40 -0.9
1,143,319 + OH686_05670 0.40 -0.8
1,143,319 + OH686_05670 0.40 +0.4
1,143,320 - OH686_05670 0.41 +0.8
1,143,320 - OH686_05670 0.41 -0.3
1,143,320 - OH686_05670 0.41 +0.5
1,143,320 - OH686_05670 0.41 +0.2
1,143,320 - OH686_05670 0.41 +0.1
1,143,320 - OH686_05670 0.41 -0.4
1,143,320 - OH686_05670 0.41 +0.3
1,143,320 - OH686_05670 0.41 -0.1
1,143,320 - OH686_05670 0.41 -0.2
1,143,320 - OH686_05670 0.41 -0.1
1,143,320 - OH686_05670 0.41 +0.5
1,143,320 - OH686_05670 0.41 +0.0
1,143,409 + OH686_05670 0.53 -0.1
1,143,409 + OH686_05670 0.53 +0.1
1,143,409 + OH686_05670 0.53 +0.1
1,143,409 + OH686_05670 0.53 -0.2
1,143,409 + OH686_05670 0.53 +0.8
1,143,409 + OH686_05670 0.53 -1.2
1,143,410 - OH686_05670 0.53 -0.4
1,143,410 - OH686_05670 0.53 -0.2
1,143,410 - OH686_05670 0.53 +0.2
1,143,416 + OH686_05670 0.53 -1.0
1,143,416 + OH686_05670 0.53 +1.5
1,143,416 + OH686_05670 0.53 -0.2
1,143,416 + OH686_05670 0.53 +0.7
1,143,416 + OH686_05670 0.53 +0.3
1,143,416 + OH686_05670 0.53 -0.2
1,143,417 - OH686_05670 0.54 +0.1
1,143,417 - OH686_05670 0.54 -0.1
1,143,417 - OH686_05670 0.54 -0.6
1,143,483 + OH686_05670 0.62 +0.4
1,143,514 + OH686_05670 0.67 +0.1
1,143,515 - OH686_05670 0.67 +0.2
1,143,515 - OH686_05670 0.67 -0.2
1,143,524 + OH686_05670 0.68 -0.5
1,143,525 - OH686_05670 0.68 +0.2
1,143,837 + -0.5
1,143,838 - -0.8
1,143,936 + OH686_05675 0.31 +0.5
1,143,936 + OH686_05675 0.31 +0.5
1,143,937 - OH686_05675 0.32 +0.1
1,143,937 - OH686_05675 0.32 +1.2
1,143,937 - OH686_05675 0.32 -0.4
1,144,188 + -0.1
1,144,189 - +0.4
1,144,192 + +0.6
1,144,193 - -1.0
1,144,193 - -1.3
1,144,212 - +0.1
1,144,500 + -0.1
1,144,526 + -1.5
1,144,527 - -1.2
1,144,588 - -0.4
1,144,698 + +0.2
1,144,991 - OH686_05680 0.18 -1.3
1,145,038 - OH686_05680 0.20 +0.2
1,145,165 - OH686_05680 0.26 -0.8
1,145,171 + OH686_05680 0.26 -0.9

Or see this region's nucleotide sequence