Strain Fitness in Pseudomonas sp. S08-1 around OH686_04475

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_04470 and OH686_04475 are separated by 13 nucleotidesOH686_04475 and OH686_04480 are separated by 11 nucleotides OH686_04470: OH686_04470 - 3-isopropylmalate dehydrogenase, at 931,396 to 932,478 _04470 OH686_04475: OH686_04475 - 3-isopropylmalate dehydratase small subunit , at 932,492 to 933,139 _04475 OH686_04480: OH686_04480 - 3-isopropylmalate dehydratase large subunit , at 933,151 to 934,578 _04480 Position (kb) 932 933 934Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 931.556 kb on + strand, within OH686_04470at 931.556 kb on + strand, within OH686_04470at 931.556 kb on + strand, within OH686_04470at 931.557 kb on - strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.649 kb on + strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.650 kb on - strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.814 kb on + strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.815 kb on - strand, within OH686_04470at 931.988 kb on + strand, within OH686_04470at 931.989 kb on - strand, within OH686_04470at 931.989 kb on - strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.003 kb on + strand, within OH686_04470at 932.004 kb on - strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.057 kb on + strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.058 kb on - strand, within OH686_04470at 932.148 kb on - strand, within OH686_04470at 932.148 kb on - strand, within OH686_04470at 932.273 kb on - strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.327 kb on + strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.328 kb on - strand, within OH686_04470at 932.384 kb on + strandat 932.384 kb on + strandat 932.384 kb on + strandat 932.384 kb on + strandat 932.384 kb on + strandat 932.385 kb on - strandat 932.385 kb on - strandat 932.385 kb on - strandat 932.385 kb on - strandat 932.385 kb on - strandat 932.490 kb on - strandat 932.640 kb on + strand, within OH686_04475at 932.640 kb on + strand, within OH686_04475at 932.640 kb on + strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.641 kb on - strand, within OH686_04475at 932.805 kb on + strand, within OH686_04475at 932.805 kb on + strand, within OH686_04475at 932.805 kb on + strand, within OH686_04475at 932.805 kb on + strand, within OH686_04475at 932.806 kb on - strand, within OH686_04475at 932.806 kb on - strand, within OH686_04475at 932.806 kb on - strand, within OH686_04475at 932.806 kb on - strand, within OH686_04475at 932.835 kb on + strand, within OH686_04475at 932.836 kb on - strand, within OH686_04475at 932.836 kb on - strand, within OH686_04475at 933.127 kb on + strandat 933.144 kb on + strandat 933.144 kb on + strandat 933.144 kb on + strandat 933.144 kb on + strandat 933.144 kb on + strandat 933.145 kb on - strandat 933.145 kb on - strandat 933.145 kb on - strandat 933.181 kb on - strandat 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.587 kb on + strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.588 kb on - strand, within OH686_04480at 933.836 kb on + strand, within OH686_04480at 933.836 kb on + strand, within OH686_04480at 933.836 kb on + strand, within OH686_04480at 933.836 kb on + strand, within OH686_04480at 933.836 kb on + strand, within OH686_04480at 933.837 kb on - strand, within OH686_04480at 933.837 kb on - strand, within OH686_04480at 933.837 kb on - strand, within OH686_04480at 933.837 kb on - strand, within OH686_04480at 933.837 kb on - strand, within OH686_04480at 933.837 kb on - strand, within OH686_04480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
931,556 + OH686_04470 0.15 -3.0
931,556 + OH686_04470 0.15 -3.5
931,556 + OH686_04470 0.15 -1.0
931,557 - OH686_04470 0.15 -2.5
931,649 + OH686_04470 0.23 -4.1
931,649 + OH686_04470 0.23 -1.4
931,649 + OH686_04470 0.23 -1.7
931,649 + OH686_04470 0.23 -2.3
931,649 + OH686_04470 0.23 -2.5
931,649 + OH686_04470 0.23 -2.5
931,649 + OH686_04470 0.23 -2.7
931,649 + OH686_04470 0.23 -4.1
931,649 + OH686_04470 0.23 -3.5
931,649 + OH686_04470 0.23 -1.7
931,650 - OH686_04470 0.23 -3.8
931,650 - OH686_04470 0.23 -3.1
931,650 - OH686_04470 0.23 -2.7
931,650 - OH686_04470 0.23 -2.7
931,650 - OH686_04470 0.23 -3.4
931,650 - OH686_04470 0.23 -2.6
931,650 - OH686_04470 0.23 -3.9
931,650 - OH686_04470 0.23 -3.3
931,650 - OH686_04470 0.23 -2.8
931,650 - OH686_04470 0.23 -4.1
931,650 - OH686_04470 0.23 -2.5
931,650 - OH686_04470 0.23 -2.4
931,650 - OH686_04470 0.23 -4.5
931,814 + OH686_04470 0.39 -0.7
931,814 + OH686_04470 0.39 -3.6
931,814 + OH686_04470 0.39 -2.2
931,814 + OH686_04470 0.39 -4.2
931,814 + OH686_04470 0.39 -1.9
931,814 + OH686_04470 0.39 -0.2
931,814 + OH686_04470 0.39 -4.3
931,814 + OH686_04470 0.39 -1.7
931,814 + OH686_04470 0.39 -0.7
931,814 + OH686_04470 0.39 -2.1
931,814 + OH686_04470 0.39 -1.0
931,814 + OH686_04470 0.39 -1.2
931,814 + OH686_04470 0.39 -3.0
931,814 + OH686_04470 0.39 -4.0
931,814 + OH686_04470 0.39 -1.0
931,814 + OH686_04470 0.39 -1.2
931,814 + OH686_04470 0.39 -1.9
931,814 + OH686_04470 0.39 -3.8
931,814 + OH686_04470 0.39 -3.0
931,814 + OH686_04470 0.39 -3.0
931,814 + OH686_04470 0.39 -2.5
931,814 + OH686_04470 0.39 -4.4
931,814 + OH686_04470 0.39 -3.2
931,814 + OH686_04470 0.39 -4.2
931,814 + OH686_04470 0.39 -2.2
931,815 - OH686_04470 0.39 -2.5
931,815 - OH686_04470 0.39 -1.5
931,815 - OH686_04470 0.39 -1.5
931,815 - OH686_04470 0.39 -2.9
931,815 - OH686_04470 0.39 -3.9
931,815 - OH686_04470 0.39 -4.5
931,815 - OH686_04470 0.39 -3.7
931,815 - OH686_04470 0.39 -1.6
931,815 - OH686_04470 0.39 -3.8
931,815 - OH686_04470 0.39 -4.7
931,815 - OH686_04470 0.39 -3.4
931,815 - OH686_04470 0.39 -0.2
931,815 - OH686_04470 0.39 -2.5
931,815 - OH686_04470 0.39 -1.6
931,815 - OH686_04470 0.39 -3.6
931,815 - OH686_04470 0.39 -2.9
931,815 - OH686_04470 0.39 -2.5
931,988 + OH686_04470 0.55 -2.4
931,989 - OH686_04470 0.55 -3.2
931,989 - OH686_04470 0.55 -2.7
932,003 + OH686_04470 0.56 -1.6
932,003 + OH686_04470 0.56 -2.4
932,003 + OH686_04470 0.56 -2.6
932,003 + OH686_04470 0.56 -4.0
932,003 + OH686_04470 0.56 -1.2
932,004 - OH686_04470 0.56 -2.6
932,057 + OH686_04470 0.61 -2.3
932,057 + OH686_04470 0.61 -3.0
932,057 + OH686_04470 0.61 -3.2
932,057 + OH686_04470 0.61 -3.5
932,057 + OH686_04470 0.61 -3.5
932,057 + OH686_04470 0.61 -2.7
932,057 + OH686_04470 0.61 -1.3
932,057 + OH686_04470 0.61 -2.9
932,058 - OH686_04470 0.61 -3.9
932,058 - OH686_04470 0.61 -3.7
932,058 - OH686_04470 0.61 -3.2
932,058 - OH686_04470 0.61 -3.9
932,058 - OH686_04470 0.61 -1.5
932,058 - OH686_04470 0.61 -1.9
932,058 - OH686_04470 0.61 -0.5
932,148 - OH686_04470 0.69 -3.4
932,148 - OH686_04470 0.69 -2.5
932,273 - OH686_04470 0.81 -1.3
932,327 + OH686_04470 0.86 -1.2
932,327 + OH686_04470 0.86 -2.7
932,327 + OH686_04470 0.86 -1.9
932,327 + OH686_04470 0.86 -2.4
932,327 + OH686_04470 0.86 -3.0
932,327 + OH686_04470 0.86 -1.2
932,327 + OH686_04470 0.86 -2.6
932,327 + OH686_04470 0.86 -3.7
932,327 + OH686_04470 0.86 -2.7
932,328 - OH686_04470 0.86 -1.0
932,328 - OH686_04470 0.86 -3.1
932,328 - OH686_04470 0.86 -2.4
932,328 - OH686_04470 0.86 -3.8
932,328 - OH686_04470 0.86 -3.2
932,384 + -3.1
932,384 + -2.9
932,384 + -4.6
932,384 + -1.7
932,384 + -3.4
932,385 - -4.0
932,385 - -3.5
932,385 - -1.7
932,385 - -4.2
932,385 - -3.1
932,490 - -1.2
932,640 + OH686_04475 0.23 -2.7
932,640 + OH686_04475 0.23 -4.0
932,640 + OH686_04475 0.23 -3.6
932,641 - OH686_04475 0.23 -3.6
932,641 - OH686_04475 0.23 -4.1
932,641 - OH686_04475 0.23 -1.0
932,641 - OH686_04475 0.23 -2.9
932,641 - OH686_04475 0.23 -2.2
932,805 + OH686_04475 0.48 -2.1
932,805 + OH686_04475 0.48 -0.7
932,805 + OH686_04475 0.48 -3.3
932,805 + OH686_04475 0.48 -3.2
932,806 - OH686_04475 0.48 -2.2
932,806 - OH686_04475 0.48 -2.5
932,806 - OH686_04475 0.48 -1.5
932,806 - OH686_04475 0.48 -3.4
932,835 + OH686_04475 0.53 -4.3
932,836 - OH686_04475 0.53 -2.9
932,836 - OH686_04475 0.53 -2.2
933,127 + -0.2
933,144 + -1.0
933,144 + -1.4
933,144 + -2.2
933,144 + -2.0
933,144 + -3.3
933,145 - +0.3
933,145 - +0.1
933,145 - -0.3
933,181 - -0.9
933,587 + OH686_04480 0.31 -3.4
933,587 + OH686_04480 0.31 -3.1
933,587 + OH686_04480 0.31 -3.8
933,587 + OH686_04480 0.31 -2.7
933,587 + OH686_04480 0.31 -2.9
933,587 + OH686_04480 0.31 -3.5
933,587 + OH686_04480 0.31 -4.4
933,587 + OH686_04480 0.31 -1.7
933,587 + OH686_04480 0.31 -1.3
933,587 + OH686_04480 0.31 -1.9
933,587 + OH686_04480 0.31 -1.5
933,587 + OH686_04480 0.31 -3.4
933,587 + OH686_04480 0.31 -1.9
933,587 + OH686_04480 0.31 -3.5
933,587 + OH686_04480 0.31 -3.2
933,587 + OH686_04480 0.31 -2.0
933,588 - OH686_04480 0.31 -2.2
933,588 - OH686_04480 0.31 -0.5
933,588 - OH686_04480 0.31 -2.8
933,588 - OH686_04480 0.31 -2.3
933,588 - OH686_04480 0.31 +0.4
933,588 - OH686_04480 0.31 -0.4
933,588 - OH686_04480 0.31 -0.2
933,588 - OH686_04480 0.31 -2.9
933,588 - OH686_04480 0.31 -2.3
933,836 + OH686_04480 0.48 -3.8
933,836 + OH686_04480 0.48 -2.6
933,836 + OH686_04480 0.48 -1.0
933,836 + OH686_04480 0.48 -3.4
933,836 + OH686_04480 0.48 -3.0
933,837 - OH686_04480 0.48 -2.2
933,837 - OH686_04480 0.48 -3.4
933,837 - OH686_04480 0.48 -5.1
933,837 - OH686_04480 0.48 -2.6
933,837 - OH686_04480 0.48 -4.8
933,837 - OH686_04480 0.48 -3.9

Or see this region's nucleotide sequence