Strain Fitness in Pseudomonas sp. S08-1 around OH686_04025

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04015 and OH686_04020 are separated by 14 nucleotidesOH686_04020 and OH686_04025 are separated by 10 nucleotidesOH686_04025 and OH686_04030 are separated by 111 nucleotidesOH686_04030 and OH686_04035 overlap by 29 nucleotides OH686_04015: OH686_04015 - Nitrate ABC transporter, substrate-binding protein, at 826,987 to 828,270 _04015 OH686_04020: OH686_04020 - nitrate ABC transporter, permease protein, at 828,285 to 829,130 _04020 OH686_04025: OH686_04025 - Nitrate ABC transporter, ATP-binding protein, at 829,141 to 829,932 _04025 OH686_04030: OH686_04030 - hypothetical protein' product='hypothetical protein, at 830,044 to 830,418 _04030 OH686_04035: OH686_04035 - Hydrolase, alpha/beta fold family, at 830,390 to 831,253 _04035 Position (kb) 829 830Strain fitness (log2 ratio) -2 -1 0 1 2at 828.242 kb on - strandat 828.310 kb on + strandat 828.310 kb on + strandat 828.310 kb on + strandat 828.311 kb on - strandat 828.480 kb on + strand, within OH686_04020at 828.513 kb on + strand, within OH686_04020at 828.514 kb on - strand, within OH686_04020at 828.514 kb on - strand, within OH686_04020at 828.724 kb on + strand, within OH686_04020at 828.828 kb on + strand, within OH686_04020at 828.828 kb on + strand, within OH686_04020at 828.828 kb on + strand, within OH686_04020at 828.829 kb on - strand, within OH686_04020at 828.829 kb on - strand, within OH686_04020at 828.955 kb on + strand, within OH686_04020at 828.956 kb on - strand, within OH686_04020at 828.956 kb on - strand, within OH686_04020at 829.119 kb on + strandat 829.120 kb on - strandat 829.120 kb on - strandat 829.128 kb on + strandat 829.128 kb on + strandat 829.128 kb on + strandat 829.128 kb on + strandat 829.129 kb on - strandat 829.129 kb on - strandat 829.129 kb on - strandat 829.289 kb on + strand, within OH686_04025at 829.289 kb on + strand, within OH686_04025at 829.289 kb on + strand, within OH686_04025at 829.289 kb on + strand, within OH686_04025at 829.289 kb on + strand, within OH686_04025at 829.290 kb on - strand, within OH686_04025at 829.462 kb on - strand, within OH686_04025at 829.868 kb on - strandat 829.876 kb on + strandat 829.903 kb on + strandat 829.903 kb on + strandat 829.903 kb on + strandat 829.903 kb on + strandat 829.904 kb on - strandat 829.904 kb on - strandat 829.980 kb on - strandat 830.008 kb on + strandat 830.008 kb on + strandat 830.008 kb on + strandat 830.009 kb on - strandat 830.009 kb on - strandat 830.009 kb on - strandat 830.009 kb on - strandat 830.009 kb on - strandat 830.050 kb on + strandat 830.050 kb on + strandat 830.051 kb on - strandat 830.051 kb on - strandat 830.059 kb on + strandat 830.059 kb on + strandat 830.059 kb on + strandat 830.060 kb on - strandat 830.060 kb on - strandat 830.060 kb on - strandat 830.060 kb on - strandat 830.060 kb on - strandat 830.060 kb on - strandat 830.060 kb on - strandat 830.060 kb on - strandat 830.106 kb on + strand, within OH686_04030at 830.106 kb on + strand, within OH686_04030at 830.106 kb on + strand, within OH686_04030at 830.107 kb on - strand, within OH686_04030at 830.107 kb on - strand, within OH686_04030at 830.107 kb on - strand, within OH686_04030at 830.107 kb on - strand, within OH686_04030at 830.230 kb on + strand, within OH686_04030at 830.230 kb on + strand, within OH686_04030at 830.231 kb on - strand, within OH686_04030at 830.231 kb on - strand, within OH686_04030at 830.231 kb on - strand, within OH686_04030at 830.231 kb on - strand, within OH686_04030at 830.231 kb on - strand, within OH686_04030at 830.311 kb on + strand, within OH686_04030at 830.311 kb on + strand, within OH686_04030at 830.311 kb on + strand, within OH686_04030at 830.312 kb on - strand, within OH686_04030at 830.312 kb on - strand, within OH686_04030at 830.312 kb on - strand, within OH686_04030at 830.396 kb on + strandat 830.396 kb on + strandat 830.396 kb on + strandat 830.396 kb on + strandat 830.397 kb on - strandat 830.397 kb on - strandat 830.397 kb on - strandat 830.397 kb on - strandat 830.397 kb on - strandat 830.397 kb on - strandat 830.397 kb on - strandat 830.397 kb on - strandat 830.611 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.613 kb on + strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.614 kb on - strand, within OH686_04035at 830.758 kb on - strand, within OH686_04035at 830.758 kb on - strand, within OH686_04035at 830.901 kb on + strand, within OH686_04035at 830.929 kb on + strand, within OH686_04035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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828,242 - -0.6
828,310 + -0.4
828,310 + -0.5
828,310 + -0.7
828,311 - -0.2
828,480 + OH686_04020 0.23 -0.4
828,513 + OH686_04020 0.27 +0.2
828,514 - OH686_04020 0.27 +0.4
828,514 - OH686_04020 0.27 +0.6
828,724 + OH686_04020 0.52 +0.3
828,828 + OH686_04020 0.64 -1.3
828,828 + OH686_04020 0.64 -0.4
828,828 + OH686_04020 0.64 -0.0
828,829 - OH686_04020 0.64 -0.1
828,829 - OH686_04020 0.64 -1.1
828,955 + OH686_04020 0.79 +0.1
828,956 - OH686_04020 0.79 +0.3
828,956 - OH686_04020 0.79 +0.1
829,119 + +0.4
829,120 - -0.1
829,120 - +1.1
829,128 + +0.4
829,128 + -0.7
829,128 + +0.0
829,128 + +0.4
829,129 - -0.2
829,129 - +1.7
829,129 - +0.0
829,289 + OH686_04025 0.19 +0.6
829,289 + OH686_04025 0.19 +0.0
829,289 + OH686_04025 0.19 +1.4
829,289 + OH686_04025 0.19 +1.0
829,289 + OH686_04025 0.19 -0.5
829,290 - OH686_04025 0.19 -0.7
829,462 - OH686_04025 0.41 +0.7
829,868 - -1.9
829,876 + +0.0
829,903 + -0.7
829,903 + -0.1
829,903 + +0.3
829,903 + +0.9
829,904 - -0.2
829,904 - -0.4
829,980 - -0.2
830,008 + -0.9
830,008 + +0.4
830,008 + -0.4
830,009 - -0.0
830,009 - +1.0
830,009 - -0.1
830,009 - +0.0
830,009 - -1.1
830,050 + +0.0
830,050 + -0.1
830,051 - -0.5
830,051 - -0.2
830,059 + -0.1
830,059 + +0.4
830,059 + +0.9
830,060 - -0.4
830,060 - +2.2
830,060 - +0.8
830,060 - +0.5
830,060 - +0.3
830,060 - -0.3
830,060 - -0.4
830,060 - +1.3
830,106 + OH686_04030 0.17 +0.4
830,106 + OH686_04030 0.17 -1.3
830,106 + OH686_04030 0.17 -0.3
830,107 - OH686_04030 0.17 +1.3
830,107 - OH686_04030 0.17 -2.2
830,107 - OH686_04030 0.17 -0.2
830,107 - OH686_04030 0.17 +0.5
830,230 + OH686_04030 0.50 -0.4
830,230 + OH686_04030 0.50 +0.8
830,231 - OH686_04030 0.50 +0.3
830,231 - OH686_04030 0.50 +1.1
830,231 - OH686_04030 0.50 +0.1
830,231 - OH686_04030 0.50 -0.0
830,231 - OH686_04030 0.50 +0.1
830,311 + OH686_04030 0.71 +0.3
830,311 + OH686_04030 0.71 -0.8
830,311 + OH686_04030 0.71 -0.6
830,312 - OH686_04030 0.71 +0.0
830,312 - OH686_04030 0.71 +0.3
830,312 - OH686_04030 0.71 -0.4
830,396 + +0.9
830,396 + +0.2
830,396 + +0.3
830,396 + -0.1
830,397 - -0.4
830,397 - +0.2
830,397 - +0.6
830,397 - +0.0
830,397 - +0.9
830,397 - +0.3
830,397 - -0.9
830,397 - -0.3
830,611 + OH686_04035 0.26 -0.1
830,613 + OH686_04035 0.26 -0.3
830,613 + OH686_04035 0.26 -0.3
830,613 + OH686_04035 0.26 -0.3
830,613 + OH686_04035 0.26 +0.3
830,613 + OH686_04035 0.26 -0.6
830,613 + OH686_04035 0.26 -0.0
830,613 + OH686_04035 0.26 +0.1
830,613 + OH686_04035 0.26 +1.2
830,613 + OH686_04035 0.26 -0.1
830,613 + OH686_04035 0.26 -0.6
830,613 + OH686_04035 0.26 -0.7
830,613 + OH686_04035 0.26 -0.4
830,613 + OH686_04035 0.26 -0.3
830,613 + OH686_04035 0.26 -0.6
830,613 + OH686_04035 0.26 +1.0
830,614 - OH686_04035 0.26 +0.7
830,614 - OH686_04035 0.26 +0.6
830,614 - OH686_04035 0.26 +0.2
830,614 - OH686_04035 0.26 +0.3
830,614 - OH686_04035 0.26 +0.1
830,614 - OH686_04035 0.26 -0.6
830,614 - OH686_04035 0.26 +0.3
830,614 - OH686_04035 0.26 -1.5
830,614 - OH686_04035 0.26 -0.9
830,614 - OH686_04035 0.26 -0.1
830,758 - OH686_04035 0.43 -1.2
830,758 - OH686_04035 0.43 -0.1
830,901 + OH686_04035 0.59 +0.3
830,929 + OH686_04035 0.62 -0.8

Or see this region's nucleotide sequence