Strain Fitness in Pseudomonas sp. S08-1 around OH686_03430

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03420 and OH686_03425 are separated by 45 nucleotidesOH686_03425 and OH686_03430 are separated by 53 nucleotidesOH686_03430 and OH686_03435 are separated by 227 nucleotides OH686_03420: OH686_03420 - Glycine/D-amino acid (deaminating), at 707,245 to 708,651 _03420 OH686_03425: OH686_03425 - Transcriptional regulator, AraC family, at 708,697 to 709,518 _03425 OH686_03430: OH686_03430 - hypothetical protein, at 709,572 to 710,351 _03430 OH686_03435: OH686_03435 - Lipase precursor , at 710,579 to 711,523 _03435 Position (kb) 709 710 711Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 708.685 kb on + strandat 708.685 kb on + strandat 708.685 kb on + strandat 708.685 kb on + strandat 708.685 kb on + strandat 708.685 kb on + strandat 708.685 kb on + strandat 708.685 kb on + strandat 708.693 kb on + strandat 708.693 kb on + strandat 708.694 kb on - strandat 708.694 kb on - strandat 708.694 kb on - strandat 708.743 kb on + strandat 708.743 kb on + strandat 708.785 kb on + strand, within OH686_03425at 708.785 kb on + strand, within OH686_03425at 708.785 kb on + strand, within OH686_03425at 708.785 kb on + strand, within OH686_03425at 708.785 kb on + strand, within OH686_03425at 708.785 kb on + strand, within OH686_03425at 708.785 kb on + strand, within OH686_03425at 708.785 kb on + strand, within OH686_03425at 708.785 kb on + strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.786 kb on - strand, within OH686_03425at 708.900 kb on - strand, within OH686_03425at 708.906 kb on - strand, within OH686_03425at 709.028 kb on + strand, within OH686_03425at 709.028 kb on + strand, within OH686_03425at 709.028 kb on + strand, within OH686_03425at 709.028 kb on + strand, within OH686_03425at 709.029 kb on - strand, within OH686_03425at 709.029 kb on - strand, within OH686_03425at 709.029 kb on - strand, within OH686_03425at 709.148 kb on + strand, within OH686_03425at 709.148 kb on + strand, within OH686_03425at 709.148 kb on + strand, within OH686_03425at 709.149 kb on - strand, within OH686_03425at 709.334 kb on + strand, within OH686_03425at 709.334 kb on + strand, within OH686_03425at 709.335 kb on - strand, within OH686_03425at 709.335 kb on - strand, within OH686_03425at 709.385 kb on + strand, within OH686_03425at 709.385 kb on + strand, within OH686_03425at 709.385 kb on + strand, within OH686_03425at 709.385 kb on + strand, within OH686_03425at 709.385 kb on + strand, within OH686_03425at 709.385 kb on + strand, within OH686_03425at 709.385 kb on + strand, within OH686_03425at 709.386 kb on - strand, within OH686_03425at 709.386 kb on - strand, within OH686_03425at 709.403 kb on + strand, within OH686_03425at 709.403 kb on + strand, within OH686_03425at 709.403 kb on + strand, within OH686_03425at 709.403 kb on + strand, within OH686_03425at 709.403 kb on + strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.404 kb on - strand, within OH686_03425at 709.773 kb on + strand, within OH686_03430at 709.774 kb on - strand, within OH686_03430at 709.840 kb on + strand, within OH686_03430at 709.840 kb on + strand, within OH686_03430at 709.840 kb on + strand, within OH686_03430at 709.840 kb on + strand, within OH686_03430at 709.841 kb on - strand, within OH686_03430at 709.841 kb on - strand, within OH686_03430at 709.841 kb on - strand, within OH686_03430at 709.966 kb on + strand, within OH686_03430at 709.967 kb on - strand, within OH686_03430at 709.967 kb on - strand, within OH686_03430at 710.320 kb on + strandat 710.320 kb on + strandat 710.320 kb on + strandat 710.320 kb on + strandat 710.320 kb on + strandat 710.320 kb on + strandat 710.321 kb on - strandat 710.321 kb on - strandat 710.321 kb on - strandat 710.447 kb on + strandat 710.447 kb on + strandat 710.448 kb on - strandat 710.448 kb on - strandat 710.448 kb on - strandat 710.451 kb on + strandat 710.451 kb on + strandat 710.452 kb on - strandat 710.452 kb on - strandat 710.452 kb on - strandat 710.455 kb on + strandat 710.455 kb on + strandat 710.456 kb on - strandat 710.456 kb on - strandat 710.482 kb on + strandat 710.482 kb on + strandat 710.482 kb on + strandat 710.483 kb on - strandat 710.494 kb on + strandat 710.494 kb on + strandat 710.494 kb on + strandat 710.494 kb on + strandat 710.494 kb on + strandat 710.494 kb on + strandat 710.495 kb on - strandat 710.495 kb on - strandat 710.495 kb on - strandat 710.495 kb on - strandat 710.544 kb on + strandat 710.544 kb on + strandat 710.545 kb on - strandat 710.545 kb on - strandat 710.571 kb on + strandat 710.571 kb on + strandat 710.571 kb on + strandat 710.572 kb on - strandat 710.572 kb on - strandat 710.572 kb on - strandat 710.572 kb on - strandat 710.572 kb on - strandat 710.572 kb on - strandat 710.572 kb on - strandat 710.723 kb on + strand, within OH686_03435at 710.723 kb on + strand, within OH686_03435at 710.729 kb on + strand, within OH686_03435at 710.729 kb on + strand, within OH686_03435at 710.775 kb on + strand, within OH686_03435at 710.775 kb on + strand, within OH686_03435at 710.775 kb on + strand, within OH686_03435at 710.775 kb on + strand, within OH686_03435at 710.776 kb on - strand, within OH686_03435at 710.776 kb on - strand, within OH686_03435at 710.776 kb on - strand, within OH686_03435at 710.776 kb on - strand, within OH686_03435at 710.776 kb on - strand, within OH686_03435at 710.918 kb on + strand, within OH686_03435at 710.918 kb on + strand, within OH686_03435at 710.918 kb on + strand, within OH686_03435at 710.918 kb on + strand, within OH686_03435at 710.918 kb on + strand, within OH686_03435at 710.918 kb on + strand, within OH686_03435at 710.919 kb on - strand, within OH686_03435at 710.919 kb on - strand, within OH686_03435at 710.919 kb on - strand, within OH686_03435at 710.919 kb on - strand, within OH686_03435at 710.919 kb on - strand, within OH686_03435at 710.919 kb on - strand, within OH686_03435at 710.919 kb on - strand, within OH686_03435at 711.251 kb on + strand, within OH686_03435at 711.252 kb on - strand, within OH686_03435at 711.285 kb on + strand, within OH686_03435at 711.285 kb on + strand, within OH686_03435at 711.285 kb on + strand, within OH686_03435at 711.285 kb on + strand, within OH686_03435at 711.285 kb on + strand, within OH686_03435at 711.286 kb on - strand, within OH686_03435at 711.286 kb on - strand, within OH686_03435at 711.286 kb on - strand, within OH686_03435at 711.286 kb on - strand, within OH686_03435at 711.320 kb on + strand, within OH686_03435at 711.320 kb on + strand, within OH686_03435at 711.320 kb on + strand, within OH686_03435at 711.321 kb on - strand, within OH686_03435at 711.321 kb on - strand, within OH686_03435at 711.321 kb on - strand, within OH686_03435at 711.321 kb on - strand, within OH686_03435at 711.321 kb on - strand, within OH686_03435at 711.321 kb on - strand, within OH686_03435at 711.321 kb on - strand, within OH686_03435at 711.321 kb on - strand, within OH686_03435

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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708,685 + +0.5
708,685 + -1.3
708,685 + -0.8
708,685 + -0.1
708,685 + -1.6
708,685 + -3.5
708,685 + +0.4
708,685 + +1.0
708,693 + -0.5
708,693 + +0.5
708,694 - -1.4
708,694 - +0.2
708,694 - +0.4
708,743 + +0.7
708,743 + -0.3
708,785 + OH686_03425 0.11 -0.1
708,785 + OH686_03425 0.11 -0.9
708,785 + OH686_03425 0.11 -0.7
708,785 + OH686_03425 0.11 +0.0
708,785 + OH686_03425 0.11 -0.6
708,785 + OH686_03425 0.11 +0.0
708,785 + OH686_03425 0.11 -0.1
708,785 + OH686_03425 0.11 -1.2
708,785 + OH686_03425 0.11 +0.0
708,786 - OH686_03425 0.11 -0.3
708,786 - OH686_03425 0.11 -0.5
708,786 - OH686_03425 0.11 -0.2
708,786 - OH686_03425 0.11 +0.7
708,786 - OH686_03425 0.11 -0.3
708,786 - OH686_03425 0.11 -0.4
708,786 - OH686_03425 0.11 -0.5
708,786 - OH686_03425 0.11 -1.2
708,786 - OH686_03425 0.11 -1.6
708,786 - OH686_03425 0.11 -0.0
708,786 - OH686_03425 0.11 -0.1
708,900 - OH686_03425 0.25 -0.3
708,906 - OH686_03425 0.25 +0.3
709,028 + OH686_03425 0.40 +1.0
709,028 + OH686_03425 0.40 -0.8
709,028 + OH686_03425 0.40 +0.3
709,028 + OH686_03425 0.40 +0.2
709,029 - OH686_03425 0.40 +0.2
709,029 - OH686_03425 0.40 +0.3
709,029 - OH686_03425 0.40 -0.2
709,148 + OH686_03425 0.55 -0.5
709,148 + OH686_03425 0.55 +0.3
709,148 + OH686_03425 0.55 -0.5
709,149 - OH686_03425 0.55 -0.3
709,334 + OH686_03425 0.77 -0.6
709,334 + OH686_03425 0.77 +0.3
709,335 - OH686_03425 0.78 +0.4
709,335 - OH686_03425 0.78 -1.1
709,385 + OH686_03425 0.84 -0.4
709,385 + OH686_03425 0.84 -0.1
709,385 + OH686_03425 0.84 +0.4
709,385 + OH686_03425 0.84 +0.5
709,385 + OH686_03425 0.84 -1.4
709,385 + OH686_03425 0.84 +0.3
709,385 + OH686_03425 0.84 -1.7
709,386 - OH686_03425 0.84 +1.0
709,386 - OH686_03425 0.84 -0.4
709,403 + OH686_03425 0.86 -0.6
709,403 + OH686_03425 0.86 -1.1
709,403 + OH686_03425 0.86 +0.1
709,403 + OH686_03425 0.86 +0.2
709,403 + OH686_03425 0.86 -1.4
709,404 - OH686_03425 0.86 -0.4
709,404 - OH686_03425 0.86 -1.4
709,404 - OH686_03425 0.86 +0.1
709,404 - OH686_03425 0.86 -0.0
709,404 - OH686_03425 0.86 -1.4
709,404 - OH686_03425 0.86 +0.1
709,404 - OH686_03425 0.86 +0.2
709,404 - OH686_03425 0.86 +0.2
709,404 - OH686_03425 0.86 +1.6
709,404 - OH686_03425 0.86 -0.3
709,773 + OH686_03430 0.26 +0.1
709,774 - OH686_03430 0.26 +0.8
709,840 + OH686_03430 0.34 -0.1
709,840 + OH686_03430 0.34 -0.3
709,840 + OH686_03430 0.34 +0.3
709,840 + OH686_03430 0.34 -0.2
709,841 - OH686_03430 0.34 -0.1
709,841 - OH686_03430 0.34 +1.6
709,841 - OH686_03430 0.34 +1.8
709,966 + OH686_03430 0.51 -0.3
709,967 - OH686_03430 0.51 +0.1
709,967 - OH686_03430 0.51 +1.0
710,320 + -0.4
710,320 + -0.9
710,320 + +0.1
710,320 + -0.2
710,320 + -0.1
710,320 + +0.8
710,321 - -0.6
710,321 - -0.7
710,321 - -1.0
710,447 + +0.8
710,447 + -0.3
710,448 - +0.4
710,448 - -0.7
710,448 - -0.3
710,451 + -1.5
710,451 + -0.3
710,452 - +0.1
710,452 - +0.6
710,452 - -2.9
710,455 + -1.0
710,455 + -1.1
710,456 - -0.2
710,456 - -0.2
710,482 + -0.6
710,482 + -0.2
710,482 + +0.7
710,483 - +0.0
710,494 + +0.4
710,494 + -0.4
710,494 + -0.5
710,494 + +0.1
710,494 + -0.3
710,494 + -1.4
710,495 - -0.6
710,495 - -0.5
710,495 - +0.6
710,495 - -0.5
710,544 + -0.3
710,544 + -1.4
710,545 - -0.1
710,545 - -0.0
710,571 + -0.1
710,571 + -1.2
710,571 + -0.9
710,572 - -2.3
710,572 - -0.1
710,572 - +1.2
710,572 - -0.5
710,572 - +0.4
710,572 - -0.6
710,572 - -1.4
710,723 + OH686_03435 0.15 -0.5
710,723 + OH686_03435 0.15 -0.9
710,729 + OH686_03435 0.16 -0.3
710,729 + OH686_03435 0.16 -0.5
710,775 + OH686_03435 0.21 -1.2
710,775 + OH686_03435 0.21 +0.6
710,775 + OH686_03435 0.21 +0.1
710,775 + OH686_03435 0.21 -1.1
710,776 - OH686_03435 0.21 -1.3
710,776 - OH686_03435 0.21 +0.4
710,776 - OH686_03435 0.21 -0.1
710,776 - OH686_03435 0.21 -1.6
710,776 - OH686_03435 0.21 +0.5
710,918 + OH686_03435 0.36 +0.1
710,918 + OH686_03435 0.36 +0.1
710,918 + OH686_03435 0.36 -1.3
710,918 + OH686_03435 0.36 -0.5
710,918 + OH686_03435 0.36 -2.0
710,918 + OH686_03435 0.36 +0.6
710,919 - OH686_03435 0.36 +0.1
710,919 - OH686_03435 0.36 -0.2
710,919 - OH686_03435 0.36 -0.0
710,919 - OH686_03435 0.36 -0.1
710,919 - OH686_03435 0.36 -0.2
710,919 - OH686_03435 0.36 +0.3
710,919 - OH686_03435 0.36 -0.5
711,251 + OH686_03435 0.71 +0.3
711,252 - OH686_03435 0.71 +0.1
711,285 + OH686_03435 0.75 -0.1
711,285 + OH686_03435 0.75 -0.8
711,285 + OH686_03435 0.75 -0.3
711,285 + OH686_03435 0.75 +0.5
711,285 + OH686_03435 0.75 -0.7
711,286 - OH686_03435 0.75 +1.3
711,286 - OH686_03435 0.75 +1.1
711,286 - OH686_03435 0.75 -0.1
711,286 - OH686_03435 0.75 -0.1
711,320 + OH686_03435 0.78 -0.4
711,320 + OH686_03435 0.78 +0.3
711,320 + OH686_03435 0.78 +0.8
711,321 - OH686_03435 0.79 +0.4
711,321 - OH686_03435 0.79 +0.2
711,321 - OH686_03435 0.79 +0.1
711,321 - OH686_03435 0.79 +0.6
711,321 - OH686_03435 0.79 -1.4
711,321 - OH686_03435 0.79 +1.0
711,321 - OH686_03435 0.79 -0.6
711,321 - OH686_03435 0.79 +0.3

Or see this region's nucleotide sequence