Strain Fitness in Pseudomonas sp. S08-1 around OH686_02620

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02610 and OH686_02615 overlap by 4 nucleotidesOH686_02615 and OH686_02620 overlap by 4 nucleotidesOH686_02620 and OH686_02625 are separated by 65 nucleotidesOH686_02625 and OH686_02630 overlap by 4 nucleotides OH686_02610: OH686_02610 - COG4339 metal-dependent phosphohydrolase, HD superfamily, at 555,843 to 556,457 _02610 OH686_02615: OH686_02615 - Cytochrome c heme lyase subunit CcmH, at 556,454 to 556,777 _02615 OH686_02620: OH686_02620 - Cytochrome c heme lyase subunit CcmH, at 556,774 to 557,904 _02620 OH686_02625: OH686_02625 - Cytochrome c heme lyase subunit CcmL, at 557,970 to 558,452 _02625 OH686_02630: OH686_02630 - Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase, at 558,449 to 558,982 _02630 Position (kb) 556 557 558Strain fitness (log2 ratio) -2 -1 0 1at 555.810 kb on + strandat 555.810 kb on + strandat 555.811 kb on - strandat 555.811 kb on - strandat 555.930 kb on + strand, within OH686_02610at 555.930 kb on + strand, within OH686_02610at 555.930 kb on + strand, within OH686_02610at 555.931 kb on - strand, within OH686_02610at 555.951 kb on + strand, within OH686_02610at 555.951 kb on + strand, within OH686_02610at 555.952 kb on - strand, within OH686_02610at 555.952 kb on - strand, within OH686_02610at 555.952 kb on - strand, within OH686_02610at 556.062 kb on + strand, within OH686_02610at 556.062 kb on + strand, within OH686_02610at 556.062 kb on + strand, within OH686_02610at 556.062 kb on + strand, within OH686_02610at 556.062 kb on + strand, within OH686_02610at 556.062 kb on + strand, within OH686_02610at 556.062 kb on + strand, within OH686_02610at 556.063 kb on - strand, within OH686_02610at 556.063 kb on - strand, within OH686_02610at 556.063 kb on - strand, within OH686_02610at 556.063 kb on - strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.263 kb on + strand, within OH686_02610at 556.264 kb on - strand, within OH686_02610at 556.264 kb on - strand, within OH686_02610at 556.264 kb on - strand, within OH686_02610at 556.264 kb on - strand, within OH686_02610at 556.273 kb on - strand, within OH686_02610at 556.273 kb on - strand, within OH686_02610at 556.296 kb on + strand, within OH686_02610at 556.297 kb on - strand, within OH686_02610at 556.297 kb on - strand, within OH686_02610at 556.297 kb on - strand, within OH686_02610at 556.342 kb on + strand, within OH686_02610at 556.342 kb on + strand, within OH686_02610at 556.343 kb on - strand, within OH686_02610at 556.343 kb on - strand, within OH686_02610at 556.343 kb on - strand, within OH686_02610at 556.361 kb on + strand, within OH686_02610at 556.361 kb on + strand, within OH686_02610at 556.375 kb on - strand, within OH686_02610at 556.375 kb on - strand, within OH686_02610at 556.455 kb on + strandat 556.456 kb on - strandat 556.456 kb on - strandat 556.456 kb on - strandat 556.456 kb on - strandat 556.495 kb on + strand, within OH686_02615at 556.496 kb on - strand, within OH686_02615at 556.560 kb on + strand, within OH686_02615at 556.561 kb on - strand, within OH686_02615at 556.561 kb on - strand, within OH686_02615at 556.561 kb on - strand, within OH686_02615at 556.563 kb on + strand, within OH686_02615at 556.563 kb on + strand, within OH686_02615at 556.564 kb on - strand, within OH686_02615at 556.579 kb on - strand, within OH686_02615at 556.581 kb on + strand, within OH686_02615at 556.581 kb on + strand, within OH686_02615at 556.581 kb on + strand, within OH686_02615at 556.581 kb on + strand, within OH686_02615at 556.581 kb on + strand, within OH686_02615at 556.582 kb on - strand, within OH686_02615at 556.582 kb on - strand, within OH686_02615at 556.582 kb on - strand, within OH686_02615at 556.582 kb on - strand, within OH686_02615at 556.582 kb on - strand, within OH686_02615at 556.582 kb on - strand, within OH686_02615at 556.582 kb on - strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.608 kb on + strand, within OH686_02615at 556.609 kb on - strand, within OH686_02615at 556.609 kb on - strand, within OH686_02615at 556.609 kb on - strand, within OH686_02615at 556.609 kb on - strand, within OH686_02615at 556.609 kb on - strand, within OH686_02615at 556.609 kb on - strand, within OH686_02615at 556.609 kb on - strand, within OH686_02615at 556.632 kb on + strand, within OH686_02615at 557.085 kb on + strand, within OH686_02620at 557.085 kb on + strand, within OH686_02620at 557.085 kb on + strand, within OH686_02620at 557.085 kb on + strand, within OH686_02620at 557.085 kb on + strand, within OH686_02620at 557.086 kb on - strand, within OH686_02620at 557.086 kb on - strand, within OH686_02620at 557.086 kb on - strand, within OH686_02620at 557.086 kb on - strand, within OH686_02620at 557.086 kb on - strand, within OH686_02620at 557.255 kb on + strand, within OH686_02620at 557.256 kb on - strand, within OH686_02620at 557.256 kb on - strand, within OH686_02620at 557.399 kb on + strand, within OH686_02620at 557.399 kb on + strand, within OH686_02620at 557.400 kb on - strand, within OH686_02620at 557.465 kb on + strand, within OH686_02620at 557.465 kb on + strand, within OH686_02620at 557.465 kb on + strand, within OH686_02620at 557.466 kb on - strand, within OH686_02620at 557.504 kb on + strand, within OH686_02620at 557.504 kb on + strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.505 kb on - strand, within OH686_02620at 557.519 kb on + strand, within OH686_02620at 557.520 kb on - strand, within OH686_02620at 557.520 kb on - strand, within OH686_02620at 557.520 kb on - strand, within OH686_02620at 557.520 kb on - strand, within OH686_02620at 557.522 kb on + strand, within OH686_02620at 557.523 kb on - strand, within OH686_02620at 557.523 kb on - strand, within OH686_02620at 557.523 kb on - strand, within OH686_02620

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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555,810 + +0.2
555,810 + -1.5
555,811 - +0.9
555,811 - -0.5
555,930 + OH686_02610 0.14 -1.9
555,930 + OH686_02610 0.14 +0.5
555,930 + OH686_02610 0.14 +0.1
555,931 - OH686_02610 0.14 +0.2
555,951 + OH686_02610 0.18 -0.6
555,951 + OH686_02610 0.18 -0.4
555,952 - OH686_02610 0.18 -0.8
555,952 - OH686_02610 0.18 +1.3
555,952 - OH686_02610 0.18 -0.2
556,062 + OH686_02610 0.36 -0.5
556,062 + OH686_02610 0.36 -0.6
556,062 + OH686_02610 0.36 -0.6
556,062 + OH686_02610 0.36 -0.1
556,062 + OH686_02610 0.36 +0.8
556,062 + OH686_02610 0.36 -0.3
556,062 + OH686_02610 0.36 -0.0
556,063 - OH686_02610 0.36 -0.2
556,063 - OH686_02610 0.36 -0.2
556,063 - OH686_02610 0.36 -0.1
556,063 - OH686_02610 0.36 +0.4
556,263 + OH686_02610 0.68 +0.8
556,263 + OH686_02610 0.68 +1.6
556,263 + OH686_02610 0.68 -0.5
556,263 + OH686_02610 0.68 +0.2
556,263 + OH686_02610 0.68 +0.3
556,263 + OH686_02610 0.68 +0.7
556,263 + OH686_02610 0.68 -1.0
556,263 + OH686_02610 0.68 +0.5
556,263 + OH686_02610 0.68 -0.2
556,263 + OH686_02610 0.68 -0.5
556,263 + OH686_02610 0.68 +0.1
556,264 - OH686_02610 0.68 +0.0
556,264 - OH686_02610 0.68 -1.2
556,264 - OH686_02610 0.68 -0.1
556,264 - OH686_02610 0.68 +0.5
556,273 - OH686_02610 0.70 +0.2
556,273 - OH686_02610 0.70 -0.2
556,296 + OH686_02610 0.74 +0.1
556,297 - OH686_02610 0.74 -0.2
556,297 - OH686_02610 0.74 +1.4
556,297 - OH686_02610 0.74 -1.0
556,342 + OH686_02610 0.81 +0.3
556,342 + OH686_02610 0.81 -0.3
556,343 - OH686_02610 0.81 +0.2
556,343 - OH686_02610 0.81 -0.5
556,343 - OH686_02610 0.81 +0.7
556,361 + OH686_02610 0.84 +0.4
556,361 + OH686_02610 0.84 -0.3
556,375 - OH686_02610 0.87 +0.6
556,375 - OH686_02610 0.87 +0.1
556,455 + +0.2
556,456 - +0.8
556,456 - -0.5
556,456 - -1.0
556,456 - -0.1
556,495 + OH686_02615 0.13 -0.3
556,496 - OH686_02615 0.13 -0.9
556,560 + OH686_02615 0.33 -0.1
556,561 - OH686_02615 0.33 -0.7
556,561 - OH686_02615 0.33 -1.2
556,561 - OH686_02615 0.33 +0.1
556,563 + OH686_02615 0.34 +0.1
556,563 + OH686_02615 0.34 -0.6
556,564 - OH686_02615 0.34 +0.3
556,579 - OH686_02615 0.39 +0.2
556,581 + OH686_02615 0.39 -0.7
556,581 + OH686_02615 0.39 +0.2
556,581 + OH686_02615 0.39 -0.4
556,581 + OH686_02615 0.39 +0.4
556,581 + OH686_02615 0.39 -0.9
556,582 - OH686_02615 0.40 +0.2
556,582 - OH686_02615 0.40 +0.2
556,582 - OH686_02615 0.40 -0.6
556,582 - OH686_02615 0.40 -0.3
556,582 - OH686_02615 0.40 -0.1
556,582 - OH686_02615 0.40 -0.4
556,582 - OH686_02615 0.40 +1.4
556,608 + OH686_02615 0.48 +0.9
556,608 + OH686_02615 0.48 +0.2
556,608 + OH686_02615 0.48 -0.0
556,608 + OH686_02615 0.48 +0.9
556,608 + OH686_02615 0.48 -1.6
556,608 + OH686_02615 0.48 +0.1
556,608 + OH686_02615 0.48 +0.2
556,608 + OH686_02615 0.48 -0.9
556,608 + OH686_02615 0.48 +0.2
556,608 + OH686_02615 0.48 -1.8
556,608 + OH686_02615 0.48 +1.0
556,609 - OH686_02615 0.48 -0.3
556,609 - OH686_02615 0.48 +0.0
556,609 - OH686_02615 0.48 -0.6
556,609 - OH686_02615 0.48 +0.2
556,609 - OH686_02615 0.48 -0.4
556,609 - OH686_02615 0.48 +1.5
556,609 - OH686_02615 0.48 +0.4
556,632 + OH686_02615 0.55 -0.5
557,085 + OH686_02620 0.27 -1.1
557,085 + OH686_02620 0.27 +1.1
557,085 + OH686_02620 0.27 -0.8
557,085 + OH686_02620 0.27 -1.4
557,085 + OH686_02620 0.27 +0.8
557,086 - OH686_02620 0.28 -0.3
557,086 - OH686_02620 0.28 -0.8
557,086 - OH686_02620 0.28 +0.0
557,086 - OH686_02620 0.28 +1.6
557,086 - OH686_02620 0.28 -0.4
557,255 + OH686_02620 0.43 -0.3
557,256 - OH686_02620 0.43 -1.8
557,256 - OH686_02620 0.43 -0.2
557,399 + OH686_02620 0.55 -1.5
557,399 + OH686_02620 0.55 -1.0
557,400 - OH686_02620 0.55 +1.2
557,465 + OH686_02620 0.61 -1.0
557,465 + OH686_02620 0.61 -0.8
557,465 + OH686_02620 0.61 -0.5
557,466 - OH686_02620 0.61 +0.5
557,504 + OH686_02620 0.65 -0.2
557,504 + OH686_02620 0.65 -1.0
557,505 - OH686_02620 0.65 -1.0
557,505 - OH686_02620 0.65 -1.2
557,505 - OH686_02620 0.65 -1.2
557,505 - OH686_02620 0.65 +0.2
557,505 - OH686_02620 0.65 -1.0
557,505 - OH686_02620 0.65 -2.3
557,505 - OH686_02620 0.65 -2.2
557,505 - OH686_02620 0.65 -1.0
557,505 - OH686_02620 0.65 -0.2
557,519 + OH686_02620 0.66 -1.6
557,520 - OH686_02620 0.66 -0.2
557,520 - OH686_02620 0.66 -1.0
557,520 - OH686_02620 0.66 -1.4
557,520 - OH686_02620 0.66 -0.5
557,522 + OH686_02620 0.66 -0.2
557,523 - OH686_02620 0.66 -0.2
557,523 - OH686_02620 0.66 -1.2
557,523 - OH686_02620 0.66 -0.8

Or see this region's nucleotide sequence