Strain Fitness in Pseudomonas sp. S08-1 around OH686_02480

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_02475 and OH686_02480 overlap by 20 nucleotidesOH686_02480 and OH686_02485 are separated by 45 nucleotidesOH686_02485 and OH686_02490 overlap by 4 nucleotides OH686_02475: OH686_02475 - Integral membrane sensor signal transduction histidine kinase , glucose catabolism cluster, at 526,629 to 528,086 _02475 OH686_02480: OH686_02480 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 528,067 to 528,804 _02480 OH686_02485: OH686_02485 - glucokinase, at 528,850 to 529,803 _02485 OH686_02490: OH686_02490 - phosphogluconate dehydratase, at 529,800 to 531,626 _02490 Position (kb) 528 529Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 527.234 kb on + strand, within OH686_02475at 527.235 kb on - strand, within OH686_02475at 527.494 kb on + strand, within OH686_02475at 527.494 kb on + strand, within OH686_02475at 527.494 kb on + strand, within OH686_02475at 527.494 kb on + strand, within OH686_02475at 527.495 kb on - strand, within OH686_02475at 527.495 kb on - strand, within OH686_02475at 527.495 kb on - strand, within OH686_02475at 527.495 kb on - strand, within OH686_02475at 527.521 kb on + strand, within OH686_02475at 527.522 kb on - strand, within OH686_02475at 527.522 kb on - strand, within OH686_02475at 527.596 kb on + strand, within OH686_02475at 527.597 kb on - strand, within OH686_02475at 527.878 kb on + strand, within OH686_02475at 527.878 kb on + strand, within OH686_02475at 527.878 kb on + strand, within OH686_02475at 527.878 kb on + strand, within OH686_02475at 527.878 kb on + strand, within OH686_02475at 527.878 kb on + strand, within OH686_02475at 527.879 kb on - strand, within OH686_02475at 527.879 kb on - strand, within OH686_02475at 527.879 kb on - strand, within OH686_02475at 527.879 kb on - strand, within OH686_02475at 527.879 kb on - strand, within OH686_02475at 528.068 kb on + strandat 528.068 kb on + strandat 528.068 kb on + strandat 528.069 kb on - strandat 528.069 kb on - strandat 528.069 kb on - strandat 528.069 kb on - strandat 528.491 kb on + strand, within OH686_02480at 528.491 kb on + strand, within OH686_02480at 528.491 kb on + strand, within OH686_02480at 528.491 kb on + strand, within OH686_02480at 528.491 kb on + strand, within OH686_02480at 528.491 kb on + strand, within OH686_02480at 528.492 kb on - strand, within OH686_02480at 528.734 kb on + strandat 528.734 kb on + strandat 528.734 kb on + strandat 528.734 kb on + strandat 528.734 kb on + strandat 528.734 kb on + strandat 528.734 kb on + strandat 528.735 kb on - strandat 528.735 kb on - strandat 528.735 kb on - strandat 528.735 kb on - strandat 528.735 kb on - strandat 528.742 kb on + strandat 528.742 kb on + strandat 528.743 kb on - strandat 528.743 kb on - strandat 528.743 kb on - strandat 528.743 kb on - strandat 528.743 kb on - strandat 528.852 kb on - strandat 528.871 kb on + strandat 528.872 kb on - strandat 528.872 kb on - strandat 528.935 kb on + strandat 528.936 kb on - strandat 528.936 kb on - strandat 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.028 kb on + strand, within OH686_02485at 529.029 kb on - strand, within OH686_02485at 529.029 kb on - strand, within OH686_02485at 529.029 kb on - strand, within OH686_02485at 529.029 kb on - strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.205 kb on + strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.206 kb on - strand, within OH686_02485at 529.372 kb on + strand, within OH686_02485at 529.372 kb on + strand, within OH686_02485at 529.372 kb on + strand, within OH686_02485at 529.373 kb on - strand, within OH686_02485at 529.581 kb on + strand, within OH686_02485at 529.581 kb on + strand, within OH686_02485at 529.786 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
527,234 + OH686_02475 0.41 -2.8
527,235 - OH686_02475 0.42 -3.7
527,494 + OH686_02475 0.59 -4.5
527,494 + OH686_02475 0.59 -2.4
527,494 + OH686_02475 0.59 -2.9
527,494 + OH686_02475 0.59 -3.0
527,495 - OH686_02475 0.59 -4.4
527,495 - OH686_02475 0.59 -2.0
527,495 - OH686_02475 0.59 -2.3
527,495 - OH686_02475 0.59 -3.0
527,521 + OH686_02475 0.61 -2.9
527,522 - OH686_02475 0.61 -1.6
527,522 - OH686_02475 0.61 -2.4
527,596 + OH686_02475 0.66 -3.3
527,597 - OH686_02475 0.66 -3.4
527,878 + OH686_02475 0.86 -3.7
527,878 + OH686_02475 0.86 -3.7
527,878 + OH686_02475 0.86 -2.8
527,878 + OH686_02475 0.86 -4.0
527,878 + OH686_02475 0.86 -3.5
527,878 + OH686_02475 0.86 -3.8
527,879 - OH686_02475 0.86 -2.8
527,879 - OH686_02475 0.86 +0.1
527,879 - OH686_02475 0.86 -4.7
527,879 - OH686_02475 0.86 -3.4
527,879 - OH686_02475 0.86 -1.6
528,068 + -3.7
528,068 + -4.2
528,068 + -1.1
528,069 - -0.8
528,069 - -1.8
528,069 - -0.1
528,069 - -4.0
528,491 + OH686_02480 0.57 -3.4
528,491 + OH686_02480 0.57 -2.2
528,491 + OH686_02480 0.57 -5.3
528,491 + OH686_02480 0.57 -3.0
528,491 + OH686_02480 0.57 -3.2
528,491 + OH686_02480 0.57 -1.6
528,492 - OH686_02480 0.58 -3.2
528,734 + -4.0
528,734 + -1.5
528,734 + -2.1
528,734 + -3.3
528,734 + -2.6
528,734 + -2.0
528,734 + -0.8
528,735 - -5.0
528,735 - -2.5
528,735 - -1.9
528,735 - -2.2
528,735 - -2.8
528,742 + -1.3
528,742 + -2.1
528,743 - -3.2
528,743 - -2.0
528,743 - -3.4
528,743 - -1.5
528,743 - -3.4
528,852 - +1.6
528,871 + -0.8
528,872 - -2.8
528,872 - -1.6
528,935 + -2.0
528,936 - -3.8
528,936 - -0.8
529,028 + OH686_02485 0.19 -3.3
529,028 + OH686_02485 0.19 -2.3
529,028 + OH686_02485 0.19 -1.1
529,028 + OH686_02485 0.19 -2.4
529,028 + OH686_02485 0.19 -3.8
529,028 + OH686_02485 0.19 -3.1
529,029 - OH686_02485 0.19 -3.4
529,029 - OH686_02485 0.19 -4.2
529,029 - OH686_02485 0.19 -4.6
529,029 - OH686_02485 0.19 -2.6
529,205 + OH686_02485 0.37 -2.2
529,205 + OH686_02485 0.37 -2.5
529,205 + OH686_02485 0.37 -2.6
529,205 + OH686_02485 0.37 -2.4
529,205 + OH686_02485 0.37 -1.1
529,205 + OH686_02485 0.37 -1.8
529,206 - OH686_02485 0.37 -4.0
529,206 - OH686_02485 0.37 -1.3
529,206 - OH686_02485 0.37 -1.2
529,206 - OH686_02485 0.37 -3.4
529,206 - OH686_02485 0.37 -4.1
529,206 - OH686_02485 0.37 -1.8
529,372 + OH686_02485 0.55 -3.3
529,372 + OH686_02485 0.55 -3.8
529,372 + OH686_02485 0.55 -1.3
529,373 - OH686_02485 0.55 -4.0
529,581 + OH686_02485 0.77 -3.1
529,581 + OH686_02485 0.77 -3.8
529,786 + -3.5

Or see this region's nucleotide sequence