Strain Fitness in Pseudomonas sp. S08-1 around OH686_02465

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02455 and OH686_02460 are separated by 11 nucleotidesOH686_02460 and OH686_02465 overlap by 8 nucleotidesOH686_02465 and OH686_02470 are separated by 224 nucleotides OH686_02455: OH686_02455 - Glucose ABC transporter, ATP-binding subunit , at 521,975 to 523,129 _02455 OH686_02460: OH686_02460 - Glucose ABC transport system, inner membrane component 2, at 523,141 to 523,986 _02460 OH686_02465: OH686_02465 - Glucose ABC transport system, inner membrane component 1, at 523,979 to 524,887 _02465 OH686_02470: OH686_02470 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 525,112 to 526,365 _02470 Position (kb) 523 524 525Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 523.092 kb on + strandat 523.092 kb on + strandat 523.092 kb on + strandat 523.093 kb on - strandat 523.093 kb on - strandat 523.093 kb on - strandat 523.138 kb on - strandat 523.181 kb on + strandat 523.181 kb on + strandat 523.182 kb on - strandat 523.182 kb on - strandat 523.182 kb on - strandat 523.199 kb on + strandat 523.199 kb on + strandat 523.199 kb on + strandat 523.199 kb on + strandat 523.200 kb on - strandat 523.200 kb on - strandat 523.253 kb on + strand, within OH686_02460at 523.254 kb on - strand, within OH686_02460at 523.254 kb on - strand, within OH686_02460at 523.254 kb on - strand, within OH686_02460at 523.254 kb on - strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.493 kb on + strand, within OH686_02460at 523.493 kb on + strand, within OH686_02460at 523.494 kb on - strand, within OH686_02460at 523.494 kb on - strand, within OH686_02460at 523.532 kb on + strand, within OH686_02460at 523.533 kb on - strand, within OH686_02460at 523.533 kb on - strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.698 kb on - strand, within OH686_02460at 523.698 kb on - strand, within OH686_02460at 523.733 kb on - strand, within OH686_02460at 523.769 kb on + strand, within OH686_02460at 523.769 kb on + strand, within OH686_02460at 523.769 kb on + strand, within OH686_02460at 523.770 kb on - strand, within OH686_02460at 523.904 kb on + strandat 523.905 kb on - strandat 523.934 kb on + strandat 523.935 kb on - strandat 523.980 kb on + strandat 523.980 kb on + strandat 523.980 kb on + strandat 523.981 kb on - strandat 523.981 kb on - strandat 523.981 kb on - strandat 523.981 kb on - strandat 523.981 kb on - strandat 524.011 kb on - strandat 524.016 kb on + strandat 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.136 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.256 kb on + strand, within OH686_02465at 524.257 kb on - strand, within OH686_02465at 524.257 kb on - strand, within OH686_02465at 524.257 kb on - strand, within OH686_02465at 524.257 kb on - strand, within OH686_02465at 524.388 kb on + strand, within OH686_02465at 524.388 kb on + strand, within OH686_02465at 524.538 kb on + strand, within OH686_02465at 524.538 kb on + strand, within OH686_02465at 524.539 kb on - strand, within OH686_02465at 524.539 kb on - strand, within OH686_02465at 524.694 kb on + strand, within OH686_02465at 524.694 kb on + strand, within OH686_02465at 524.695 kb on - strand, within OH686_02465at 524.695 kb on - strand, within OH686_02465at 524.695 kb on - strand, within OH686_02465at 524.695 kb on - strand, within OH686_02465at 524.718 kb on + strand, within OH686_02465at 524.718 kb on + strand, within OH686_02465at 524.718 kb on + strand, within OH686_02465at 524.719 kb on - strand, within OH686_02465at 524.719 kb on - strand, within OH686_02465at 524.719 kb on - strand, within OH686_02465at 524.719 kb on - strand, within OH686_02465at 524.772 kb on + strand, within OH686_02465at 524.772 kb on + strand, within OH686_02465at 524.772 kb on + strand, within OH686_02465at 524.772 kb on + strand, within OH686_02465at 524.773 kb on - strand, within OH686_02465at 524.773 kb on - strand, within OH686_02465at 524.773 kb on - strand, within OH686_02465at 524.778 kb on + strand, within OH686_02465at 524.778 kb on + strand, within OH686_02465at 524.778 kb on + strand, within OH686_02465at 524.779 kb on - strand, within OH686_02465at 524.779 kb on - strand, within OH686_02465at 524.779 kb on - strand, within OH686_02465at 524.779 kb on - strand, within OH686_02465at 524.792 kb on + strand, within OH686_02465at 524.792 kb on + strand, within OH686_02465at 524.878 kb on + strandat 524.878 kb on + strandat 524.879 kb on - strandat 524.940 kb on + strandat 524.940 kb on + strandat 524.940 kb on + strandat 524.941 kb on - strandat 524.941 kb on - strandat 525.076 kb on - strandat 525.092 kb on - strandat 525.092 kb on - strandat 525.113 kb on + strandat 525.113 kb on + strandat 525.113 kb on + strandat 525.114 kb on - strandat 525.114 kb on - strandat 525.221 kb on + strandat 525.221 kb on + strandat 525.221 kb on + strandat 525.221 kb on + strandat 525.222 kb on - strandat 525.222 kb on - strandat 525.222 kb on - strandat 525.222 kb on - strandat 525.222 kb on - strandat 525.222 kb on - strandat 525.222 kb on - strandat 525.479 kb on + strand, within OH686_02470at 525.479 kb on + strand, within OH686_02470at 525.479 kb on + strand, within OH686_02470at 525.479 kb on + strand, within OH686_02470at 525.480 kb on - strand, within OH686_02470at 525.480 kb on - strand, within OH686_02470at 525.480 kb on - strand, within OH686_02470at 525.521 kb on + strand, within OH686_02470at 525.521 kb on + strand, within OH686_02470at 525.522 kb on - strand, within OH686_02470at 525.658 kb on - strand, within OH686_02470at 525.659 kb on + strand, within OH686_02470at 525.659 kb on + strand, within OH686_02470at 525.659 kb on + strand, within OH686_02470at 525.660 kb on - strand, within OH686_02470at 525.660 kb on - strand, within OH686_02470at 525.660 kb on - strand, within OH686_02470at 525.660 kb on - strand, within OH686_02470at 525.749 kb on + strand, within OH686_02470

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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523,092 + -0.2
523,092 + -3.6
523,092 + -3.1
523,093 - -5.4
523,093 - -3.5
523,093 - -1.6
523,138 - -3.5
523,181 + -2.7
523,181 + -3.0
523,182 - +1.4
523,182 - -1.3
523,182 - -3.1
523,199 + -2.6
523,199 + -3.1
523,199 + -2.3
523,199 + -2.4
523,200 - -4.0
523,200 - -3.4
523,253 + OH686_02460 0.13 -4.0
523,254 - OH686_02460 0.13 -2.8
523,254 - OH686_02460 0.13 -3.2
523,254 - OH686_02460 0.13 -2.5
523,254 - OH686_02460 0.13 -1.2
523,282 + OH686_02460 0.17 -2.4
523,282 + OH686_02460 0.17 -2.9
523,282 + OH686_02460 0.17 -4.4
523,282 + OH686_02460 0.17 -3.5
523,282 + OH686_02460 0.17 -1.5
523,282 + OH686_02460 0.17 -3.2
523,282 + OH686_02460 0.17 -3.1
523,283 - OH686_02460 0.17 -3.4
523,283 - OH686_02460 0.17 -3.8
523,283 - OH686_02460 0.17 -2.7
523,283 - OH686_02460 0.17 -2.6
523,283 - OH686_02460 0.17 -3.8
523,283 - OH686_02460 0.17 -2.5
523,493 + OH686_02460 0.42 -3.6
523,493 + OH686_02460 0.42 -3.3
523,494 - OH686_02460 0.42 -3.9
523,494 - OH686_02460 0.42 -1.8
523,532 + OH686_02460 0.46 -3.5
523,533 - OH686_02460 0.46 -3.5
523,533 - OH686_02460 0.46 -2.9
523,697 + OH686_02460 0.66 -2.4
523,697 + OH686_02460 0.66 -1.4
523,697 + OH686_02460 0.66 -3.0
523,697 + OH686_02460 0.66 -4.5
523,697 + OH686_02460 0.66 -3.3
523,697 + OH686_02460 0.66 -3.3
523,697 + OH686_02460 0.66 -2.1
523,698 - OH686_02460 0.66 -1.8
523,698 - OH686_02460 0.66 -2.0
523,733 - OH686_02460 0.70 -3.5
523,769 + OH686_02460 0.74 -2.4
523,769 + OH686_02460 0.74 -4.4
523,769 + OH686_02460 0.74 -3.8
523,770 - OH686_02460 0.74 -2.6
523,904 + -4.4
523,905 - -1.2
523,934 + -3.0
523,935 - -3.3
523,980 + -2.6
523,980 + -3.0
523,980 + -2.0
523,981 - -3.2
523,981 - -3.9
523,981 - -3.4
523,981 - -0.1
523,981 - -3.2
524,011 - -3.5
524,016 + -0.3
524,106 + OH686_02465 0.14 -3.6
524,106 + OH686_02465 0.14 -2.2
524,106 + OH686_02465 0.14 -2.7
524,106 + OH686_02465 0.14 -3.4
524,106 + OH686_02465 0.14 -4.2
524,106 + OH686_02465 0.14 -4.0
524,107 - OH686_02465 0.14 -2.7
524,107 - OH686_02465 0.14 -3.6
524,107 - OH686_02465 0.14 -3.4
524,107 - OH686_02465 0.14 -4.2
524,107 - OH686_02465 0.14 -2.8
524,136 + OH686_02465 0.17 -3.9
524,256 + OH686_02465 0.30 -3.0
524,256 + OH686_02465 0.30 -1.2
524,256 + OH686_02465 0.30 -1.5
524,256 + OH686_02465 0.30 -4.1
524,256 + OH686_02465 0.30 -2.1
524,256 + OH686_02465 0.30 -3.0
524,256 + OH686_02465 0.30 -2.4
524,256 + OH686_02465 0.30 -4.1
524,256 + OH686_02465 0.30 -3.1
524,257 - OH686_02465 0.31 -2.7
524,257 - OH686_02465 0.31 -3.4
524,257 - OH686_02465 0.31 -1.6
524,257 - OH686_02465 0.31 -3.1
524,388 + OH686_02465 0.45 -2.3
524,388 + OH686_02465 0.45 -3.4
524,538 + OH686_02465 0.61 -1.3
524,538 + OH686_02465 0.61 -3.3
524,539 - OH686_02465 0.62 -2.9
524,539 - OH686_02465 0.62 -4.0
524,694 + OH686_02465 0.79 -0.8
524,694 + OH686_02465 0.79 -1.1
524,695 - OH686_02465 0.79 -4.8
524,695 - OH686_02465 0.79 -4.1
524,695 - OH686_02465 0.79 -3.8
524,695 - OH686_02465 0.79 -1.0
524,718 + OH686_02465 0.81 -3.9
524,718 + OH686_02465 0.81 -2.3
524,718 + OH686_02465 0.81 -2.9
524,719 - OH686_02465 0.81 -3.3
524,719 - OH686_02465 0.81 -3.1
524,719 - OH686_02465 0.81 -3.1
524,719 - OH686_02465 0.81 -2.6
524,772 + OH686_02465 0.87 -3.2
524,772 + OH686_02465 0.87 -3.8
524,772 + OH686_02465 0.87 -1.9
524,772 + OH686_02465 0.87 -2.9
524,773 - OH686_02465 0.87 -1.8
524,773 - OH686_02465 0.87 -3.7
524,773 - OH686_02465 0.87 -2.8
524,778 + OH686_02465 0.88 -2.9
524,778 + OH686_02465 0.88 -3.1
524,778 + OH686_02465 0.88 -3.7
524,779 - OH686_02465 0.88 -1.0
524,779 - OH686_02465 0.88 -3.2
524,779 - OH686_02465 0.88 -4.6
524,779 - OH686_02465 0.88 -1.5
524,792 + OH686_02465 0.89 -2.0
524,792 + OH686_02465 0.89 -4.2
524,878 + -2.1
524,878 + -3.4
524,879 - -2.8
524,940 + -2.3
524,940 + -2.8
524,940 + -1.5
524,941 - -3.2
524,941 - -2.3
525,076 - -0.5
525,092 - -0.1
525,092 - -1.3
525,113 + -3.1
525,113 + -2.8
525,113 + -2.6
525,114 - -0.1
525,114 - -3.1
525,221 + -3.2
525,221 + -1.3
525,221 + -2.7
525,221 + -1.2
525,222 - -3.7
525,222 - -3.2
525,222 - -5.3
525,222 - -2.9
525,222 - -3.2
525,222 - -3.1
525,222 - -4.3
525,479 + OH686_02470 0.29 -1.6
525,479 + OH686_02470 0.29 -1.5
525,479 + OH686_02470 0.29 -1.7
525,479 + OH686_02470 0.29 -2.3
525,480 - OH686_02470 0.29 -1.2
525,480 - OH686_02470 0.29 -1.9
525,480 - OH686_02470 0.29 -3.2
525,521 + OH686_02470 0.33 -2.6
525,521 + OH686_02470 0.33 -3.5
525,522 - OH686_02470 0.33 -3.3
525,658 - OH686_02470 0.44 -1.2
525,659 + OH686_02470 0.44 -3.7
525,659 + OH686_02470 0.44 -1.2
525,659 + OH686_02470 0.44 -2.9
525,660 - OH686_02470 0.44 -4.0
525,660 - OH686_02470 0.44 -2.6
525,660 - OH686_02470 0.44 -4.0
525,660 - OH686_02470 0.44 -0.2
525,749 + OH686_02470 0.51 -3.1

Or see this region's nucleotide sequence