Strain Fitness in Pseudomonas sp. S08-1 around OH686_02455

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_02450 and OH686_02455 are separated by 87 nucleotidesOH686_02455 and OH686_02460 are separated by 11 nucleotidesOH686_02460 and OH686_02465 overlap by 8 nucleotides OH686_02450: OH686_02450 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 520,646 to 521,887 _02450 OH686_02455: OH686_02455 - Glucose ABC transporter, ATP-binding subunit , at 521,975 to 523,129 _02455 OH686_02460: OH686_02460 - Glucose ABC transport system, inner membrane component 2, at 523,141 to 523,986 _02460 OH686_02465: OH686_02465 - Glucose ABC transport system, inner membrane component 1, at 523,979 to 524,887 _02465 Position (kb) 521 522 523 524Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 521.011 kb on - strand, within OH686_02450at 521.011 kb on - strand, within OH686_02450at 521.115 kb on + strand, within OH686_02450at 521.115 kb on + strand, within OH686_02450at 521.115 kb on + strand, within OH686_02450at 521.116 kb on - strand, within OH686_02450at 521.116 kb on - strand, within OH686_02450at 521.145 kb on + strand, within OH686_02450at 521.146 kb on - strand, within OH686_02450at 521.146 kb on - strand, within OH686_02450at 521.248 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.250 kb on + strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.251 kb on - strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.325 kb on + strand, within OH686_02450at 521.326 kb on - strand, within OH686_02450at 521.326 kb on - strand, within OH686_02450at 521.326 kb on - strand, within OH686_02450at 521.326 kb on - strand, within OH686_02450at 521.340 kb on + strand, within OH686_02450at 521.340 kb on + strand, within OH686_02450at 521.340 kb on + strand, within OH686_02450at 521.341 kb on - strand, within OH686_02450at 521.341 kb on - strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.364 kb on + strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.365 kb on - strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.370 kb on + strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.371 kb on - strand, within OH686_02450at 521.430 kb on + strand, within OH686_02450at 521.433 kb on + strand, within OH686_02450at 521.433 kb on + strand, within OH686_02450at 521.433 kb on + strand, within OH686_02450at 521.433 kb on + strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.434 kb on - strand, within OH686_02450at 521.466 kb on + strand, within OH686_02450at 521.466 kb on + strand, within OH686_02450at 521.466 kb on + strand, within OH686_02450at 521.467 kb on - strand, within OH686_02450at 521.467 kb on - strand, within OH686_02450at 521.467 kb on - strand, within OH686_02450at 521.529 kb on + strand, within OH686_02450at 521.529 kb on + strand, within OH686_02450at 521.530 kb on - strand, within OH686_02450at 521.530 kb on - strand, within OH686_02450at 521.557 kb on - strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.595 kb on + strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.596 kb on - strand, within OH686_02450at 521.676 kb on + strand, within OH686_02450at 521.677 kb on - strand, within OH686_02450at 521.703 kb on + strand, within OH686_02450at 521.704 kb on - strand, within OH686_02450at 521.782 kb on - strandat 521.872 kb on + strandat 521.872 kb on + strandat 521.873 kb on - strandat 521.873 kb on - strandat 521.873 kb on - strandat 521.873 kb on - strandat 521.873 kb on - strandat 521.888 kb on - strandat 521.906 kb on + strandat 521.906 kb on + strandat 521.906 kb on + strandat 521.907 kb on - strandat 521.907 kb on - strandat 521.907 kb on - strandat 521.914 kb on + strandat 521.914 kb on + strandat 521.914 kb on + strandat 521.914 kb on + strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.915 kb on - strandat 521.976 kb on + strandat 522.002 kb on - strandat 522.357 kb on - strand, within OH686_02455at 522.459 kb on + strand, within OH686_02455at 522.460 kb on - strand, within OH686_02455at 522.460 kb on - strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.558 kb on + strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.559 kb on - strand, within OH686_02455at 522.660 kb on + strand, within OH686_02455at 522.660 kb on + strand, within OH686_02455at 522.660 kb on + strand, within OH686_02455at 522.660 kb on + strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.661 kb on - strand, within OH686_02455at 522.873 kb on + strand, within OH686_02455at 523.092 kb on + strandat 523.092 kb on + strandat 523.092 kb on + strandat 523.093 kb on - strandat 523.093 kb on - strandat 523.093 kb on - strandat 523.138 kb on - strandat 523.181 kb on + strandat 523.181 kb on + strandat 523.182 kb on - strandat 523.182 kb on - strandat 523.182 kb on - strandat 523.199 kb on + strandat 523.199 kb on + strandat 523.199 kb on + strandat 523.199 kb on + strandat 523.200 kb on - strandat 523.200 kb on - strandat 523.253 kb on + strand, within OH686_02460at 523.254 kb on - strand, within OH686_02460at 523.254 kb on - strand, within OH686_02460at 523.254 kb on - strand, within OH686_02460at 523.254 kb on - strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.282 kb on + strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.283 kb on - strand, within OH686_02460at 523.493 kb on + strand, within OH686_02460at 523.493 kb on + strand, within OH686_02460at 523.494 kb on - strand, within OH686_02460at 523.494 kb on - strand, within OH686_02460at 523.532 kb on + strand, within OH686_02460at 523.533 kb on - strand, within OH686_02460at 523.533 kb on - strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.697 kb on + strand, within OH686_02460at 523.698 kb on - strand, within OH686_02460at 523.698 kb on - strand, within OH686_02460at 523.733 kb on - strand, within OH686_02460at 523.769 kb on + strand, within OH686_02460at 523.769 kb on + strand, within OH686_02460at 523.769 kb on + strand, within OH686_02460at 523.770 kb on - strand, within OH686_02460at 523.904 kb on + strandat 523.905 kb on - strandat 523.934 kb on + strandat 523.935 kb on - strandat 523.980 kb on + strandat 523.980 kb on + strandat 523.980 kb on + strandat 523.981 kb on - strandat 523.981 kb on - strandat 523.981 kb on - strandat 523.981 kb on - strandat 523.981 kb on - strandat 524.011 kb on - strandat 524.016 kb on + strandat 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.106 kb on + strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465at 524.107 kb on - strand, within OH686_02465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
521,011 - OH686_02450 0.29 +0.4
521,011 - OH686_02450 0.29 +0.8
521,115 + OH686_02450 0.38 +0.1
521,115 + OH686_02450 0.38 -0.9
521,115 + OH686_02450 0.38 -0.6
521,116 - OH686_02450 0.38 +0.2
521,116 - OH686_02450 0.38 +0.2
521,145 + OH686_02450 0.40 -0.4
521,146 - OH686_02450 0.40 -0.5
521,146 - OH686_02450 0.40 +0.7
521,248 + OH686_02450 0.48 +0.4
521,250 + OH686_02450 0.49 -1.0
521,250 + OH686_02450 0.49 -0.9
521,250 + OH686_02450 0.49 -0.6
521,250 + OH686_02450 0.49 +0.5
521,250 + OH686_02450 0.49 -0.2
521,251 - OH686_02450 0.49 -0.6
521,251 - OH686_02450 0.49 -1.6
521,251 - OH686_02450 0.49 +0.4
521,251 - OH686_02450 0.49 +0.7
521,251 - OH686_02450 0.49 -1.9
521,251 - OH686_02450 0.49 +0.5
521,251 - OH686_02450 0.49 +0.5
521,251 - OH686_02450 0.49 -0.7
521,251 - OH686_02450 0.49 -0.3
521,251 - OH686_02450 0.49 -0.1
521,325 + OH686_02450 0.55 +0.4
521,325 + OH686_02450 0.55 -0.2
521,325 + OH686_02450 0.55 -0.2
521,325 + OH686_02450 0.55 -0.8
521,325 + OH686_02450 0.55 +0.8
521,325 + OH686_02450 0.55 -0.9
521,326 - OH686_02450 0.55 +0.2
521,326 - OH686_02450 0.55 +0.5
521,326 - OH686_02450 0.55 +1.8
521,326 - OH686_02450 0.55 -0.8
521,340 + OH686_02450 0.56 -0.8
521,340 + OH686_02450 0.56 -0.4
521,340 + OH686_02450 0.56 -0.7
521,341 - OH686_02450 0.56 +0.5
521,341 - OH686_02450 0.56 +0.3
521,364 + OH686_02450 0.58 -1.3
521,364 + OH686_02450 0.58 -0.3
521,364 + OH686_02450 0.58 -0.0
521,364 + OH686_02450 0.58 +0.4
521,364 + OH686_02450 0.58 -0.1
521,364 + OH686_02450 0.58 -0.1
521,364 + OH686_02450 0.58 -1.1
521,364 + OH686_02450 0.58 -0.6
521,364 + OH686_02450 0.58 +0.2
521,364 + OH686_02450 0.58 +0.1
521,365 - OH686_02450 0.58 -1.1
521,365 - OH686_02450 0.58 -0.3
521,365 - OH686_02450 0.58 +0.4
521,365 - OH686_02450 0.58 -1.0
521,365 - OH686_02450 0.58 +1.1
521,365 - OH686_02450 0.58 +0.7
521,365 - OH686_02450 0.58 +0.8
521,365 - OH686_02450 0.58 +0.4
521,365 - OH686_02450 0.58 +0.4
521,365 - OH686_02450 0.58 +0.4
521,365 - OH686_02450 0.58 -0.1
521,365 - OH686_02450 0.58 +0.4
521,370 + OH686_02450 0.58 -0.2
521,370 + OH686_02450 0.58 -1.6
521,370 + OH686_02450 0.58 +0.1
521,370 + OH686_02450 0.58 -0.3
521,370 + OH686_02450 0.58 +0.6
521,370 + OH686_02450 0.58 +0.6
521,370 + OH686_02450 0.58 -0.1
521,370 + OH686_02450 0.58 -0.5
521,370 + OH686_02450 0.58 +0.1
521,371 - OH686_02450 0.58 +0.7
521,371 - OH686_02450 0.58 -0.1
521,371 - OH686_02450 0.58 -0.1
521,371 - OH686_02450 0.58 -0.2
521,371 - OH686_02450 0.58 -0.1
521,371 - OH686_02450 0.58 -0.5
521,371 - OH686_02450 0.58 +0.2
521,430 + OH686_02450 0.63 -0.1
521,433 + OH686_02450 0.63 -1.3
521,433 + OH686_02450 0.63 +0.8
521,433 + OH686_02450 0.63 -0.4
521,433 + OH686_02450 0.63 -0.7
521,434 - OH686_02450 0.63 -0.6
521,434 - OH686_02450 0.63 +0.6
521,434 - OH686_02450 0.63 +0.7
521,434 - OH686_02450 0.63 +0.7
521,434 - OH686_02450 0.63 +0.3
521,434 - OH686_02450 0.63 +0.7
521,466 + OH686_02450 0.66 -1.3
521,466 + OH686_02450 0.66 -0.8
521,466 + OH686_02450 0.66 +1.1
521,467 - OH686_02450 0.66 -0.4
521,467 - OH686_02450 0.66 -0.0
521,467 - OH686_02450 0.66 -0.1
521,529 + OH686_02450 0.71 -1.1
521,529 + OH686_02450 0.71 -0.2
521,530 - OH686_02450 0.71 -0.0
521,530 - OH686_02450 0.71 +0.1
521,557 - OH686_02450 0.73 +0.2
521,595 + OH686_02450 0.76 -0.2
521,595 + OH686_02450 0.76 -0.3
521,595 + OH686_02450 0.76 -1.9
521,595 + OH686_02450 0.76 -0.9
521,595 + OH686_02450 0.76 +0.9
521,596 - OH686_02450 0.76 +0.2
521,596 - OH686_02450 0.76 +0.4
521,596 - OH686_02450 0.76 +0.8
521,596 - OH686_02450 0.76 -0.2
521,596 - OH686_02450 0.76 -0.9
521,676 + OH686_02450 0.83 -0.6
521,677 - OH686_02450 0.83 -0.4
521,703 + OH686_02450 0.85 -0.4
521,704 - OH686_02450 0.85 -0.9
521,782 - +0.6
521,872 + +1.3
521,872 + -0.4
521,873 - +0.6
521,873 - +0.0
521,873 - -0.1
521,873 - +0.1
521,873 - +1.7
521,888 - +0.5
521,906 + -0.1
521,906 + -0.6
521,906 + -0.4
521,907 - -1.2
521,907 - +0.3
521,907 - +0.9
521,914 + +0.6
521,914 + -1.7
521,914 + -1.1
521,914 + +0.0
521,915 - -0.5
521,915 - +0.3
521,915 - +0.3
521,915 - +1.8
521,915 - +0.7
521,915 - +0.5
521,976 + -1.4
522,002 - +0.3
522,357 - OH686_02455 0.33 -1.7
522,459 + OH686_02455 0.42 -3.8
522,460 - OH686_02455 0.42 -4.1
522,460 - OH686_02455 0.42 -3.6
522,558 + OH686_02455 0.50 -2.5
522,558 + OH686_02455 0.50 -5.0
522,558 + OH686_02455 0.50 -0.5
522,558 + OH686_02455 0.50 -3.0
522,558 + OH686_02455 0.50 -2.3
522,558 + OH686_02455 0.50 -3.5
522,558 + OH686_02455 0.50 -3.9
522,558 + OH686_02455 0.50 -3.7
522,558 + OH686_02455 0.50 -3.0
522,558 + OH686_02455 0.50 -2.7
522,559 - OH686_02455 0.51 -0.5
522,559 - OH686_02455 0.51 -3.2
522,559 - OH686_02455 0.51 -3.6
522,559 - OH686_02455 0.51 -2.5
522,559 - OH686_02455 0.51 -2.5
522,559 - OH686_02455 0.51 -2.6
522,660 + OH686_02455 0.59 -2.7
522,660 + OH686_02455 0.59 -2.4
522,660 + OH686_02455 0.59 -1.3
522,660 + OH686_02455 0.59 -3.1
522,661 - OH686_02455 0.59 -3.1
522,661 - OH686_02455 0.59 -3.6
522,661 - OH686_02455 0.59 -3.9
522,661 - OH686_02455 0.59 -2.9
522,661 - OH686_02455 0.59 -2.9
522,661 - OH686_02455 0.59 -4.5
522,873 + OH686_02455 0.78 -3.0
523,092 + -0.2
523,092 + -3.6
523,092 + -3.1
523,093 - -5.4
523,093 - -3.5
523,093 - -1.6
523,138 - -3.5
523,181 + -2.7
523,181 + -3.0
523,182 - +1.4
523,182 - -1.3
523,182 - -3.1
523,199 + -2.6
523,199 + -3.1
523,199 + -2.3
523,199 + -2.4
523,200 - -4.0
523,200 - -3.4
523,253 + OH686_02460 0.13 -4.0
523,254 - OH686_02460 0.13 -2.8
523,254 - OH686_02460 0.13 -3.2
523,254 - OH686_02460 0.13 -2.5
523,254 - OH686_02460 0.13 -1.2
523,282 + OH686_02460 0.17 -2.4
523,282 + OH686_02460 0.17 -2.9
523,282 + OH686_02460 0.17 -4.4
523,282 + OH686_02460 0.17 -3.5
523,282 + OH686_02460 0.17 -1.5
523,282 + OH686_02460 0.17 -3.2
523,282 + OH686_02460 0.17 -3.1
523,283 - OH686_02460 0.17 -3.4
523,283 - OH686_02460 0.17 -3.8
523,283 - OH686_02460 0.17 -2.7
523,283 - OH686_02460 0.17 -2.6
523,283 - OH686_02460 0.17 -3.8
523,283 - OH686_02460 0.17 -2.5
523,493 + OH686_02460 0.42 -3.6
523,493 + OH686_02460 0.42 -3.3
523,494 - OH686_02460 0.42 -3.9
523,494 - OH686_02460 0.42 -1.8
523,532 + OH686_02460 0.46 -3.5
523,533 - OH686_02460 0.46 -3.5
523,533 - OH686_02460 0.46 -2.9
523,697 + OH686_02460 0.66 -2.4
523,697 + OH686_02460 0.66 -1.4
523,697 + OH686_02460 0.66 -3.0
523,697 + OH686_02460 0.66 -4.5
523,697 + OH686_02460 0.66 -3.3
523,697 + OH686_02460 0.66 -3.3
523,697 + OH686_02460 0.66 -2.1
523,698 - OH686_02460 0.66 -1.8
523,698 - OH686_02460 0.66 -2.0
523,733 - OH686_02460 0.70 -3.5
523,769 + OH686_02460 0.74 -2.4
523,769 + OH686_02460 0.74 -4.4
523,769 + OH686_02460 0.74 -3.8
523,770 - OH686_02460 0.74 -2.6
523,904 + -4.4
523,905 - -1.2
523,934 + -3.0
523,935 - -3.3
523,980 + -2.6
523,980 + -3.0
523,980 + -2.0
523,981 - -3.2
523,981 - -3.9
523,981 - -3.4
523,981 - -0.1
523,981 - -3.2
524,011 - -3.5
524,016 + -0.3
524,106 + OH686_02465 0.14 -3.6
524,106 + OH686_02465 0.14 -2.2
524,106 + OH686_02465 0.14 -2.7
524,106 + OH686_02465 0.14 -3.4
524,106 + OH686_02465 0.14 -4.2
524,106 + OH686_02465 0.14 -4.0
524,107 - OH686_02465 0.14 -2.7
524,107 - OH686_02465 0.14 -3.6
524,107 - OH686_02465 0.14 -3.4
524,107 - OH686_02465 0.14 -4.2
524,107 - OH686_02465 0.14 -2.8

Or see this region's nucleotide sequence