Strain Fitness in Pseudomonas sp. S08-1 around OH686_02415

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_02410 and OH686_02415 are separated by 18 nucleotidesOH686_02415 and OH686_02420 are separated by 26 nucleotidesOH686_02420 and OH686_02425 are separated by 43 nucleotidesOH686_02425 and OH686_02430 are separated by 16 nucleotides OH686_02410: OH686_02410 - Error-prone repair-related of DNA polymerase III alpha subunit , at 510,762 to 513,833 _02410 OH686_02415: OH686_02415 - Glyceraldehyde-3-phosphate dehydrogenase, putative, at 513,852 to 515,477 _02415 OH686_02420: OH686_02420 - hypothetical protein, at 515,504 to 515,668 _02420 OH686_02425: OH686_02425 - 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase , at 515,712 to 516,401 _02425 OH686_02430: OH686_02430 - 6-phosphogluconolactonase , eukaryotic type, at 516,418 to 517,134 _02430 Position (kb) 513 514 515 516Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 512.885 kb on + strand, within OH686_02410at 512.885 kb on + strand, within OH686_02410at 512.886 kb on - strand, within OH686_02410at 512.889 kb on + strand, within OH686_02410at 512.889 kb on + strand, within OH686_02410at 512.890 kb on - strand, within OH686_02410at 512.890 kb on - strand, within OH686_02410at 512.890 kb on - strand, within OH686_02410at 512.890 kb on - strand, within OH686_02410at 512.934 kb on + strand, within OH686_02410at 512.934 kb on + strand, within OH686_02410at 512.934 kb on + strand, within OH686_02410at 512.934 kb on + strand, within OH686_02410at 512.935 kb on - strand, within OH686_02410at 512.935 kb on - strand, within OH686_02410at 513.012 kb on + strand, within OH686_02410at 513.013 kb on - strand, within OH686_02410at 513.391 kb on + strand, within OH686_02410at 513.391 kb on + strand, within OH686_02410at 513.391 kb on + strand, within OH686_02410at 513.391 kb on + strand, within OH686_02410at 513.391 kb on + strand, within OH686_02410at 513.391 kb on + strand, within OH686_02410at 513.392 kb on - strand, within OH686_02410at 513.392 kb on - strand, within OH686_02410at 513.392 kb on - strand, within OH686_02410at 513.392 kb on - strand, within OH686_02410at 513.392 kb on - strand, within OH686_02410at 513.394 kb on + strand, within OH686_02410at 513.394 kb on + strand, within OH686_02410at 513.395 kb on - strand, within OH686_02410at 513.395 kb on - strand, within OH686_02410at 513.395 kb on - strand, within OH686_02410at 513.442 kb on - strand, within OH686_02410at 513.442 kb on - strand, within OH686_02410at 513.442 kb on - strand, within OH686_02410at 513.862 kb on + strandat 513.862 kb on + strandat 513.862 kb on + strandat 513.862 kb on + strandat 513.862 kb on + strandat 513.862 kb on + strandat 513.862 kb on + strandat 513.863 kb on - strandat 513.863 kb on - strandat 513.863 kb on - strandat 513.863 kb on - strandat 513.863 kb on - strandat 513.863 kb on - strandat 514.171 kb on + strand, within OH686_02415at 514.171 kb on + strand, within OH686_02415at 514.171 kb on + strand, within OH686_02415at 514.172 kb on - strand, within OH686_02415at 514.172 kb on - strand, within OH686_02415at 514.172 kb on - strand, within OH686_02415at 514.282 kb on + strand, within OH686_02415at 514.283 kb on - strand, within OH686_02415at 514.283 kb on - strand, within OH686_02415at 514.283 kb on - strand, within OH686_02415at 514.343 kb on + strand, within OH686_02415at 514.369 kb on + strand, within OH686_02415at 514.370 kb on - strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.759 kb on + strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.760 kb on - strand, within OH686_02415at 514.859 kb on + strand, within OH686_02415at 514.860 kb on - strand, within OH686_02415at 514.912 kb on + strand, within OH686_02415at 514.913 kb on - strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.918 kb on + strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 514.919 kb on - strand, within OH686_02415at 515.044 kb on + strand, within OH686_02415at 515.044 kb on + strand, within OH686_02415at 515.044 kb on + strand, within OH686_02415at 515.044 kb on + strand, within OH686_02415at 515.045 kb on - strand, within OH686_02415at 515.045 kb on - strand, within OH686_02415at 515.218 kb on + strand, within OH686_02415at 515.218 kb on + strand, within OH686_02415at 515.219 kb on - strand, within OH686_02415at 515.219 kb on - strand, within OH686_02415at 515.219 kb on - strand, within OH686_02415at 515.219 kb on - strand, within OH686_02415at 515.384 kb on - strandat 515.384 kb on - strandat 515.384 kb on - strandat 515.384 kb on - strandat 515.384 kb on - strandat 515.384 kb on - strandat 515.583 kb on + strand, within OH686_02420at 515.673 kb on + strandat 515.673 kb on + strandat 515.674 kb on - strandat 515.674 kb on - strandat 515.674 kb on - strandat 515.690 kb on - strandat 515.695 kb on + strandat 515.695 kb on + strandat 515.695 kb on + strandat 515.696 kb on - strandat 515.696 kb on - strandat 515.696 kb on - strandat 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.836 kb on + strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.837 kb on - strand, within OH686_02425at 515.977 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.034 kb on + strand, within OH686_02425at 516.035 kb on - strand, within OH686_02425at 516.035 kb on - strand, within OH686_02425at 516.431 kb on + strandat 516.431 kb on + strandat 516.431 kb on + strandat 516.432 kb on - strandat 516.432 kb on - strandat 516.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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512,885 + OH686_02410 0.69 -0.4
512,885 + OH686_02410 0.69 +1.3
512,886 - OH686_02410 0.69 +0.6
512,889 + OH686_02410 0.69 -2.1
512,889 + OH686_02410 0.69 -0.8
512,890 - OH686_02410 0.69 -0.2
512,890 - OH686_02410 0.69 -0.2
512,890 - OH686_02410 0.69 -0.5
512,890 - OH686_02410 0.69 +0.1
512,934 + OH686_02410 0.71 +0.2
512,934 + OH686_02410 0.71 +0.1
512,934 + OH686_02410 0.71 +0.2
512,934 + OH686_02410 0.71 -0.7
512,935 - OH686_02410 0.71 -1.2
512,935 - OH686_02410 0.71 -0.4
513,012 + OH686_02410 0.73 +1.4
513,013 - OH686_02410 0.73 -0.9
513,391 + OH686_02410 0.86 -0.3
513,391 + OH686_02410 0.86 -0.2
513,391 + OH686_02410 0.86 +0.0
513,391 + OH686_02410 0.86 +0.8
513,391 + OH686_02410 0.86 -0.4
513,391 + OH686_02410 0.86 -1.0
513,392 - OH686_02410 0.86 -0.1
513,392 - OH686_02410 0.86 -0.2
513,392 - OH686_02410 0.86 -1.7
513,392 - OH686_02410 0.86 +0.2
513,392 - OH686_02410 0.86 +0.6
513,394 + OH686_02410 0.86 +0.2
513,394 + OH686_02410 0.86 +0.0
513,395 - OH686_02410 0.86 +1.0
513,395 - OH686_02410 0.86 -1.0
513,395 - OH686_02410 0.86 +1.0
513,442 - OH686_02410 0.87 -0.3
513,442 - OH686_02410 0.87 +0.5
513,442 - OH686_02410 0.87 -0.3
513,862 + -1.5
513,862 + +0.3
513,862 + +0.8
513,862 + -0.3
513,862 + -1.3
513,862 + -0.4
513,862 + -1.3
513,863 - -0.0
513,863 - -0.2
513,863 - -0.3
513,863 - +0.8
513,863 - -0.1
513,863 - -0.9
514,171 + OH686_02415 0.20 -2.7
514,171 + OH686_02415 0.20 -2.7
514,171 + OH686_02415 0.20 -3.0
514,172 - OH686_02415 0.20 -2.4
514,172 - OH686_02415 0.20 -1.6
514,172 - OH686_02415 0.20 -3.0
514,282 + OH686_02415 0.26 -2.8
514,283 - OH686_02415 0.27 -2.9
514,283 - OH686_02415 0.27 -1.5
514,283 - OH686_02415 0.27 -1.0
514,343 + OH686_02415 0.30 -1.9
514,369 + OH686_02415 0.32 -3.0
514,370 - OH686_02415 0.32 -2.6
514,759 + OH686_02415 0.56 -1.9
514,759 + OH686_02415 0.56 -2.6
514,759 + OH686_02415 0.56 -1.4
514,759 + OH686_02415 0.56 -4.6
514,759 + OH686_02415 0.56 -3.3
514,760 - OH686_02415 0.56 -3.5
514,760 - OH686_02415 0.56 -1.4
514,760 - OH686_02415 0.56 -0.2
514,760 - OH686_02415 0.56 -1.9
514,760 - OH686_02415 0.56 -4.3
514,760 - OH686_02415 0.56 -3.0
514,760 - OH686_02415 0.56 -1.2
514,760 - OH686_02415 0.56 -1.3
514,760 - OH686_02415 0.56 -2.8
514,760 - OH686_02415 0.56 -1.5
514,859 + OH686_02415 0.62 -3.5
514,860 - OH686_02415 0.62 -3.1
514,912 + OH686_02415 0.65 -1.4
514,913 - OH686_02415 0.65 -2.8
514,918 + OH686_02415 0.66 -3.3
514,918 + OH686_02415 0.66 -3.4
514,918 + OH686_02415 0.66 -1.2
514,918 + OH686_02415 0.66 -2.3
514,918 + OH686_02415 0.66 -2.6
514,919 - OH686_02415 0.66 -1.5
514,919 - OH686_02415 0.66 -2.8
514,919 - OH686_02415 0.66 -3.1
514,919 - OH686_02415 0.66 -1.2
514,919 - OH686_02415 0.66 -3.7
514,919 - OH686_02415 0.66 -2.1
514,919 - OH686_02415 0.66 -2.4
515,044 + OH686_02415 0.73 -2.1
515,044 + OH686_02415 0.73 -3.7
515,044 + OH686_02415 0.73 -2.9
515,044 + OH686_02415 0.73 -3.5
515,045 - OH686_02415 0.73 -2.4
515,045 - OH686_02415 0.73 -3.3
515,218 + OH686_02415 0.84 -1.6
515,218 + OH686_02415 0.84 -2.9
515,219 - OH686_02415 0.84 -1.0
515,219 - OH686_02415 0.84 -4.5
515,219 - OH686_02415 0.84 -1.9
515,219 - OH686_02415 0.84 -1.9
515,384 - -2.1
515,384 - -1.6
515,384 - -2.7
515,384 - -3.4
515,384 - -1.7
515,384 - -1.5
515,583 + OH686_02420 0.48 -1.5
515,673 + -1.8
515,673 + -0.6
515,674 - -0.2
515,674 - -1.2
515,674 - -1.2
515,690 - -0.1
515,695 + -2.6
515,695 + -2.3
515,695 + -1.6
515,696 - -1.0
515,696 - -0.7
515,696 - -0.5
515,836 + OH686_02425 0.18 -2.1
515,836 + OH686_02425 0.18 -4.7
515,836 + OH686_02425 0.18 -4.3
515,836 + OH686_02425 0.18 -4.3
515,836 + OH686_02425 0.18 -2.9
515,836 + OH686_02425 0.18 -0.7
515,836 + OH686_02425 0.18 -3.7
515,836 + OH686_02425 0.18 -2.9
515,836 + OH686_02425 0.18 -3.7
515,836 + OH686_02425 0.18 -3.0
515,836 + OH686_02425 0.18 -3.8
515,836 + OH686_02425 0.18 -3.6
515,836 + OH686_02425 0.18 -3.7
515,836 + OH686_02425 0.18 -4.1
515,836 + OH686_02425 0.18 -3.9
515,836 + OH686_02425 0.18 -4.4
515,836 + OH686_02425 0.18 -2.3
515,837 - OH686_02425 0.18 -3.1
515,837 - OH686_02425 0.18 -4.8
515,837 - OH686_02425 0.18 -3.5
515,837 - OH686_02425 0.18 -0.8
515,837 - OH686_02425 0.18 -3.6
515,837 - OH686_02425 0.18 -2.2
515,837 - OH686_02425 0.18 -2.2
515,837 - OH686_02425 0.18 -1.5
515,837 - OH686_02425 0.18 -3.5
515,837 - OH686_02425 0.18 -2.9
515,837 - OH686_02425 0.18 -3.3
515,837 - OH686_02425 0.18 -2.5
515,837 - OH686_02425 0.18 -1.2
515,837 - OH686_02425 0.18 -2.1
515,837 - OH686_02425 0.18 -4.5
515,837 - OH686_02425 0.18 -3.1
515,837 - OH686_02425 0.18 -2.5
515,977 + OH686_02425 0.38 -3.3
516,034 + OH686_02425 0.47 -2.2
516,034 + OH686_02425 0.47 -2.6
516,034 + OH686_02425 0.47 -1.9
516,035 - OH686_02425 0.47 -4.5
516,035 - OH686_02425 0.47 -4.2
516,431 + -2.2
516,431 + -2.3
516,431 + -2.8
516,432 - -3.0
516,432 - -1.5
516,432 - -1.8

Or see this region's nucleotide sequence