Strain Fitness in Pseudomonas sp. S08-1 around OH686_01795

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01785 and OH686_01790 are separated by 56 nucleotidesOH686_01790 and OH686_01795 are separated by 10 nucleotidesOH686_01795 and OH686_01800 overlap by 1 nucleotides OH686_01785: OH686_01785 - hypothetical protein, at 382,898 to 383,179 _01785 OH686_01790: OH686_01790 - Arylesterase precursor , at 383,236 to 383,841 _01790 OH686_01795: OH686_01795 - ABC-type antimicrobial peptide transport system, ATPase component, at 383,852 to 384,535 _01795 OH686_01800: OH686_01800 - ABC transporter, fused permease protein, at 384,535 to 387,027 _01800 Position (kb) 383 384 385Strain fitness (log2 ratio) -2 -1 0 1 2at 382.869 kb on + strandat 382.869 kb on + strandat 382.869 kb on + strandat 382.870 kb on - strandat 382.870 kb on - strandat 382.870 kb on - strandat 382.994 kb on - strand, within OH686_01785at 383.154 kb on + strandat 383.154 kb on + strandat 383.155 kb on - strandat 383.155 kb on - strandat 383.155 kb on - strandat 383.379 kb on + strand, within OH686_01790at 383.421 kb on + strand, within OH686_01790at 383.423 kb on + strand, within OH686_01790at 383.423 kb on + strand, within OH686_01790at 383.424 kb on - strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.435 kb on + strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.436 kb on - strand, within OH686_01790at 383.461 kb on + strand, within OH686_01790at 383.461 kb on + strand, within OH686_01790at 383.461 kb on + strand, within OH686_01790at 383.461 kb on + strand, within OH686_01790at 383.461 kb on + strand, within OH686_01790at 383.461 kb on + strand, within OH686_01790at 383.462 kb on - strand, within OH686_01790at 383.462 kb on - strand, within OH686_01790at 383.462 kb on - strand, within OH686_01790at 383.462 kb on - strand, within OH686_01790at 383.462 kb on - strand, within OH686_01790at 383.637 kb on + strand, within OH686_01790at 383.662 kb on + strand, within OH686_01790at 383.662 kb on + strand, within OH686_01790at 383.662 kb on + strand, within OH686_01790at 383.663 kb on - strand, within OH686_01790at 383.663 kb on - strand, within OH686_01790at 383.663 kb on - strand, within OH686_01790at 383.727 kb on + strand, within OH686_01790at 383.728 kb on - strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.751 kb on + strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.752 kb on - strand, within OH686_01790at 383.770 kb on + strand, within OH686_01790at 383.770 kb on + strand, within OH686_01790at 383.770 kb on + strand, within OH686_01790at 383.771 kb on - strand, within OH686_01790at 383.869 kb on + strandat 383.869 kb on + strandat 383.869 kb on + strandat 383.869 kb on + strandat 383.870 kb on - strandat 383.870 kb on - strandat 383.870 kb on - strandat 383.870 kb on - strandat 383.884 kb on + strandat 383.884 kb on + strandat 383.885 kb on - strandat 383.885 kb on - strandat 383.885 kb on - strandat 383.885 kb on - strandat 383.885 kb on - strandat 384.012 kb on + strand, within OH686_01795at 384.013 kb on - strand, within OH686_01795at 384.013 kb on - strand, within OH686_01795at 384.655 kb on + strandat 384.656 kb on - strandat 384.656 kb on - strandat 384.910 kb on + strand, within OH686_01800at 384.911 kb on - strand, within OH686_01800at 384.911 kb on - strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.078 kb on + strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.079 kb on - strand, within OH686_01800at 385.081 kb on - strand, within OH686_01800at 385.086 kb on - strand, within OH686_01800at 385.201 kb on + strand, within OH686_01800at 385.201 kb on + strand, within OH686_01800at 385.201 kb on + strand, within OH686_01800at 385.201 kb on + strand, within OH686_01800at 385.201 kb on + strand, within OH686_01800at 385.202 kb on - strand, within OH686_01800at 385.303 kb on + strand, within OH686_01800at 385.303 kb on + strand, within OH686_01800at 385.304 kb on - strand, within OH686_01800

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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382,869 + -0.1
382,869 + -0.2
382,869 + +0.5
382,870 - +0.8
382,870 - +0.1
382,870 - +0.0
382,994 - OH686_01785 0.34 -0.5
383,154 + -0.8
383,154 + +1.3
383,155 - -0.5
383,155 - -0.1
383,155 - +0.3
383,379 + OH686_01790 0.24 +0.2
383,421 + OH686_01790 0.31 -1.2
383,423 + OH686_01790 0.31 -0.4
383,423 + OH686_01790 0.31 +0.3
383,424 - OH686_01790 0.31 +0.9
383,435 + OH686_01790 0.33 +0.6
383,435 + OH686_01790 0.33 +0.0
383,435 + OH686_01790 0.33 +0.5
383,435 + OH686_01790 0.33 +0.6
383,435 + OH686_01790 0.33 -0.2
383,435 + OH686_01790 0.33 +0.1
383,435 + OH686_01790 0.33 -0.2
383,435 + OH686_01790 0.33 -0.2
383,435 + OH686_01790 0.33 -1.6
383,435 + OH686_01790 0.33 +0.5
383,435 + OH686_01790 0.33 +0.2
383,435 + OH686_01790 0.33 -0.8
383,436 - OH686_01790 0.33 +0.0
383,436 - OH686_01790 0.33 -0.3
383,436 - OH686_01790 0.33 +0.3
383,436 - OH686_01790 0.33 -0.6
383,436 - OH686_01790 0.33 +0.1
383,436 - OH686_01790 0.33 -0.2
383,436 - OH686_01790 0.33 -0.0
383,436 - OH686_01790 0.33 -0.9
383,436 - OH686_01790 0.33 +0.5
383,436 - OH686_01790 0.33 +0.6
383,436 - OH686_01790 0.33 +0.1
383,436 - OH686_01790 0.33 +0.7
383,461 + OH686_01790 0.37 -0.3
383,461 + OH686_01790 0.37 +0.0
383,461 + OH686_01790 0.37 -0.3
383,461 + OH686_01790 0.37 +0.1
383,461 + OH686_01790 0.37 -0.9
383,461 + OH686_01790 0.37 -0.6
383,462 - OH686_01790 0.37 +0.7
383,462 - OH686_01790 0.37 +0.4
383,462 - OH686_01790 0.37 +1.0
383,462 - OH686_01790 0.37 -0.9
383,462 - OH686_01790 0.37 -0.4
383,637 + OH686_01790 0.66 -0.1
383,662 + OH686_01790 0.70 +0.3
383,662 + OH686_01790 0.70 -0.6
383,662 + OH686_01790 0.70 -2.3
383,663 - OH686_01790 0.70 -0.5
383,663 - OH686_01790 0.70 +0.8
383,663 - OH686_01790 0.70 +0.3
383,727 + OH686_01790 0.81 -0.2
383,728 - OH686_01790 0.81 -0.2
383,751 + OH686_01790 0.85 -0.0
383,751 + OH686_01790 0.85 +0.8
383,751 + OH686_01790 0.85 -0.5
383,751 + OH686_01790 0.85 -1.1
383,751 + OH686_01790 0.85 +0.2
383,751 + OH686_01790 0.85 -0.1
383,751 + OH686_01790 0.85 +0.0
383,751 + OH686_01790 0.85 +0.1
383,751 + OH686_01790 0.85 -0.5
383,751 + OH686_01790 0.85 +0.3
383,751 + OH686_01790 0.85 +0.3
383,751 + OH686_01790 0.85 -1.2
383,751 + OH686_01790 0.85 -0.3
383,752 - OH686_01790 0.85 +0.4
383,752 - OH686_01790 0.85 +0.4
383,752 - OH686_01790 0.85 +0.5
383,752 - OH686_01790 0.85 -0.9
383,752 - OH686_01790 0.85 -0.3
383,752 - OH686_01790 0.85 -0.2
383,752 - OH686_01790 0.85 +0.3
383,752 - OH686_01790 0.85 -0.8
383,752 - OH686_01790 0.85 +0.2
383,752 - OH686_01790 0.85 -0.1
383,752 - OH686_01790 0.85 +1.3
383,770 + OH686_01790 0.88 +0.5
383,770 + OH686_01790 0.88 +1.0
383,770 + OH686_01790 0.88 +0.0
383,771 - OH686_01790 0.88 -1.5
383,869 + -0.0
383,869 + +0.3
383,869 + -0.1
383,869 + +0.4
383,870 - -1.2
383,870 - +0.1
383,870 - -0.1
383,870 - -0.7
383,884 + -0.2
383,884 + -0.7
383,885 - -1.0
383,885 - -1.0
383,885 - +0.3
383,885 - -0.6
383,885 - -0.3
384,012 + OH686_01795 0.23 -0.7
384,013 - OH686_01795 0.24 -0.5
384,013 - OH686_01795 0.24 -1.0
384,655 + +1.3
384,656 - -2.0
384,656 - -0.3
384,910 + OH686_01800 0.15 +0.8
384,911 - OH686_01800 0.15 -0.5
384,911 - OH686_01800 0.15 -0.8
385,078 + OH686_01800 0.22 +1.0
385,078 + OH686_01800 0.22 +0.8
385,078 + OH686_01800 0.22 +0.2
385,078 + OH686_01800 0.22 -0.2
385,078 + OH686_01800 0.22 +0.1
385,078 + OH686_01800 0.22 +1.3
385,078 + OH686_01800 0.22 -0.2
385,078 + OH686_01800 0.22 -0.3
385,078 + OH686_01800 0.22 -0.0
385,078 + OH686_01800 0.22 +0.4
385,078 + OH686_01800 0.22 +1.3
385,078 + OH686_01800 0.22 +0.4
385,078 + OH686_01800 0.22 +0.3
385,078 + OH686_01800 0.22 +1.3
385,079 - OH686_01800 0.22 -0.3
385,079 - OH686_01800 0.22 +2.0
385,079 - OH686_01800 0.22 -0.0
385,079 - OH686_01800 0.22 -0.9
385,079 - OH686_01800 0.22 -0.3
385,079 - OH686_01800 0.22 +0.6
385,079 - OH686_01800 0.22 +0.5
385,079 - OH686_01800 0.22 -0.4
385,079 - OH686_01800 0.22 +0.3
385,079 - OH686_01800 0.22 -0.2
385,079 - OH686_01800 0.22 +1.3
385,081 - OH686_01800 0.22 +0.2
385,086 - OH686_01800 0.22 -1.1
385,201 + OH686_01800 0.27 -1.5
385,201 + OH686_01800 0.27 -0.5
385,201 + OH686_01800 0.27 -0.4
385,201 + OH686_01800 0.27 +0.2
385,201 + OH686_01800 0.27 +0.8
385,202 - OH686_01800 0.27 +0.1
385,303 + OH686_01800 0.31 -0.9
385,303 + OH686_01800 0.31 -1.1
385,304 - OH686_01800 0.31 -0.1

Or see this region's nucleotide sequence