Strain Fitness in Pseudomonas sp. S08-1 around OH686_01445

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01430 and OH686_01435 are separated by 54 nucleotidesOH686_01435 and OH686_01440 are separated by 154 nucleotidesOH686_01440 and OH686_01445 are separated by 3 nucleotidesOH686_01445 and OH686_01450 overlap by 1 nucleotidesOH686_01450 and OH686_01455 are separated by 42 nucleotides OH686_01430: OH686_01430 - Ku protein, at 315,501 to 316,373 _01430 OH686_01435: OH686_01435 - CDS, at 316,428 to 316,562 _01435 OH686_01440: OH686_01440 - hypothetical protein, at 316,717 to 316,938 _01440 OH686_01445: OH686_01445 - hypothetical protein, at 316,942 to 317,550 _01445 OH686_01450: OH686_01450 - hypothetical protein, at 317,550 to 317,783 _01450 OH686_01455: OH686_01455 - Catalase KatE-intracellular protease , at 317,826 to 319,958 _01455 Position (kb) 316 317 318Strain fitness (log2 ratio) -2 -1 0 1 2at 315.966 kb on + strand, within OH686_01430at 315.966 kb on + strand, within OH686_01430at 315.966 kb on + strand, within OH686_01430at 315.966 kb on + strand, within OH686_01430at 315.967 kb on - strand, within OH686_01430at 315.967 kb on - strand, within OH686_01430at 315.967 kb on - strand, within OH686_01430at 315.967 kb on - strand, within OH686_01430at 315.967 kb on - strand, within OH686_01430at 315.967 kb on - strand, within OH686_01430at 316.006 kb on + strand, within OH686_01430at 316.006 kb on + strand, within OH686_01430at 316.006 kb on + strand, within OH686_01430at 316.006 kb on + strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.007 kb on - strand, within OH686_01430at 316.039 kb on + strand, within OH686_01430at 316.039 kb on + strand, within OH686_01430at 316.039 kb on + strand, within OH686_01430at 316.039 kb on + strand, within OH686_01430at 316.039 kb on + strand, within OH686_01430at 316.039 kb on + strand, within OH686_01430at 316.039 kb on + strand, within OH686_01430at 316.039 kb on + strand, within OH686_01430at 316.040 kb on - strand, within OH686_01430at 316.040 kb on - strand, within OH686_01430at 316.040 kb on - strand, within OH686_01430at 316.042 kb on + strand, within OH686_01430at 316.042 kb on + strand, within OH686_01430at 316.042 kb on + strand, within OH686_01430at 316.042 kb on + strand, within OH686_01430at 316.043 kb on - strand, within OH686_01430at 316.043 kb on - strand, within OH686_01430at 316.043 kb on - strand, within OH686_01430at 316.098 kb on - strand, within OH686_01430at 316.159 kb on + strand, within OH686_01430at 316.159 kb on + strand, within OH686_01430at 316.159 kb on + strand, within OH686_01430at 316.159 kb on + strand, within OH686_01430at 316.160 kb on - strand, within OH686_01430at 316.160 kb on - strand, within OH686_01430at 316.160 kb on - strand, within OH686_01430at 316.174 kb on + strand, within OH686_01430at 316.240 kb on + strand, within OH686_01430at 316.240 kb on + strand, within OH686_01430at 316.240 kb on + strand, within OH686_01430at 316.241 kb on - strand, within OH686_01430at 316.326 kb on - strandat 316.361 kb on + strandat 316.361 kb on + strandat 316.362 kb on - strandat 316.362 kb on - strandat 316.362 kb on - strandat 316.397 kb on - strandat 316.450 kb on + strand, within OH686_01435at 316.451 kb on - strand, within OH686_01435at 316.451 kb on - strand, within OH686_01435at 316.451 kb on - strand, within OH686_01435at 316.451 kb on - strand, within OH686_01435at 316.532 kb on + strand, within OH686_01435at 316.533 kb on - strand, within OH686_01435at 316.533 kb on - strand, within OH686_01435at 316.631 kb on + strandat 316.631 kb on + strandat 316.631 kb on + strandat 316.641 kb on + strandat 316.641 kb on + strandat 316.641 kb on + strandat 316.641 kb on + strandat 316.642 kb on - strandat 316.642 kb on - strandat 316.642 kb on - strandat 316.673 kb on - strandat 316.673 kb on - strandat 316.673 kb on - strandat 316.673 kb on - strandat 316.729 kb on + strandat 316.729 kb on + strandat 316.729 kb on + strandat 316.730 kb on - strandat 316.731 kb on - strandat 316.825 kb on + strand, within OH686_01440at 316.825 kb on + strand, within OH686_01440at 316.825 kb on + strand, within OH686_01440at 316.825 kb on + strand, within OH686_01440at 316.826 kb on - strand, within OH686_01440at 316.966 kb on + strandat 316.966 kb on + strandat 316.966 kb on + strandat 316.966 kb on + strandat 316.967 kb on - strandat 316.967 kb on - strandat 316.967 kb on - strandat 316.982 kb on - strandat 316.982 kb on - strandat 317.038 kb on + strand, within OH686_01445at 317.039 kb on - strand, within OH686_01445at 317.039 kb on - strand, within OH686_01445at 317.279 kb on + strand, within OH686_01445at 317.279 kb on + strand, within OH686_01445at 317.280 kb on - strand, within OH686_01445at 317.623 kb on + strand, within OH686_01450at 317.624 kb on - strand, within OH686_01450at 317.624 kb on - strand, within OH686_01450at 317.624 kb on - strand, within OH686_01450at 317.653 kb on - strand, within OH686_01450at 317.678 kb on + strand, within OH686_01450at 317.678 kb on + strand, within OH686_01450at 317.678 kb on + strand, within OH686_01450at 317.678 kb on + strand, within OH686_01450at 317.678 kb on + strand, within OH686_01450at 317.679 kb on - strand, within OH686_01450at 317.679 kb on - strand, within OH686_01450at 317.679 kb on - strand, within OH686_01450at 317.679 kb on - strand, within OH686_01450at 317.679 kb on - strand, within OH686_01450at 317.679 kb on - strand, within OH686_01450at 318.013 kb on + strandat 318.013 kb on + strandat 318.014 kb on - strandat 318.028 kb on + strandat 318.028 kb on + strandat 318.028 kb on + strandat 318.028 kb on + strandat 318.028 kb on + strandat 318.028 kb on + strandat 318.028 kb on + strandat 318.028 kb on + strandat 318.029 kb on - strandat 318.029 kb on - strandat 318.029 kb on - strandat 318.029 kb on - strandat 318.029 kb on - strandat 318.141 kb on + strand, within OH686_01455at 318.141 kb on + strand, within OH686_01455at 318.141 kb on + strand, within OH686_01455at 318.141 kb on + strand, within OH686_01455at 318.141 kb on + strand, within OH686_01455at 318.142 kb on - strand, within OH686_01455at 318.142 kb on - strand, within OH686_01455at 318.142 kb on - strand, within OH686_01455at 318.146 kb on + strand, within OH686_01455at 318.146 kb on + strand, within OH686_01455at 318.147 kb on - strand, within OH686_01455at 318.352 kb on - strand, within OH686_01455at 318.499 kb on + strand, within OH686_01455at 318.499 kb on + strand, within OH686_01455at 318.500 kb on - strand, within OH686_01455at 318.500 kb on - strand, within OH686_01455

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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315,966 + OH686_01430 0.53 -0.1
315,966 + OH686_01430 0.53 -0.8
315,966 + OH686_01430 0.53 +0.4
315,966 + OH686_01430 0.53 +1.4
315,967 - OH686_01430 0.53 -1.1
315,967 - OH686_01430 0.53 -0.0
315,967 - OH686_01430 0.53 +0.4
315,967 - OH686_01430 0.53 +1.2
315,967 - OH686_01430 0.53 +0.5
315,967 - OH686_01430 0.53 -2.3
316,006 + OH686_01430 0.58 +0.9
316,006 + OH686_01430 0.58 +0.2
316,006 + OH686_01430 0.58 -0.4
316,006 + OH686_01430 0.58 -0.5
316,007 - OH686_01430 0.58 -1.1
316,007 - OH686_01430 0.58 +0.0
316,007 - OH686_01430 0.58 -0.1
316,007 - OH686_01430 0.58 +0.6
316,007 - OH686_01430 0.58 -0.6
316,007 - OH686_01430 0.58 +0.2
316,007 - OH686_01430 0.58 -0.4
316,007 - OH686_01430 0.58 -0.5
316,007 - OH686_01430 0.58 -0.1
316,039 + OH686_01430 0.62 -0.0
316,039 + OH686_01430 0.62 -0.4
316,039 + OH686_01430 0.62 -0.4
316,039 + OH686_01430 0.62 -0.4
316,039 + OH686_01430 0.62 +0.5
316,039 + OH686_01430 0.62 +0.1
316,039 + OH686_01430 0.62 +0.8
316,039 + OH686_01430 0.62 -0.7
316,040 - OH686_01430 0.62 +0.2
316,040 - OH686_01430 0.62 -0.1
316,040 - OH686_01430 0.62 +0.3
316,042 + OH686_01430 0.62 +0.3
316,042 + OH686_01430 0.62 +0.2
316,042 + OH686_01430 0.62 +0.2
316,042 + OH686_01430 0.62 -0.1
316,043 - OH686_01430 0.62 -0.9
316,043 - OH686_01430 0.62 -0.5
316,043 - OH686_01430 0.62 +0.5
316,098 - OH686_01430 0.68 -0.3
316,159 + OH686_01430 0.75 +0.7
316,159 + OH686_01430 0.75 -0.7
316,159 + OH686_01430 0.75 -0.3
316,159 + OH686_01430 0.75 -0.3
316,160 - OH686_01430 0.75 -2.2
316,160 - OH686_01430 0.75 -0.7
316,160 - OH686_01430 0.75 -0.0
316,174 + OH686_01430 0.77 +0.3
316,240 + OH686_01430 0.85 +0.0
316,240 + OH686_01430 0.85 +0.7
316,240 + OH686_01430 0.85 -0.1
316,241 - OH686_01430 0.85 +0.9
316,326 - +0.5
316,361 + +0.7
316,361 + +0.6
316,362 - +0.2
316,362 - -0.0
316,362 - -0.0
316,397 - -0.2
316,450 + OH686_01435 0.16 +0.4
316,451 - OH686_01435 0.17 +0.0
316,451 - OH686_01435 0.17 +1.4
316,451 - OH686_01435 0.17 +0.2
316,451 - OH686_01435 0.17 -2.2
316,532 + OH686_01435 0.77 +1.2
316,533 - OH686_01435 0.78 -0.9
316,533 - OH686_01435 0.78 -0.0
316,631 + -1.2
316,631 + +0.3
316,631 + -0.3
316,641 + +0.3
316,641 + +0.6
316,641 + -0.5
316,641 + -0.2
316,642 - -0.8
316,642 - -0.1
316,642 - -1.6
316,673 - -1.5
316,673 - +0.7
316,673 - -0.9
316,673 - -0.8
316,729 + -0.3
316,729 + +0.1
316,729 + -0.5
316,730 - -0.5
316,731 - -0.6
316,825 + OH686_01440 0.49 +0.1
316,825 + OH686_01440 0.49 -0.1
316,825 + OH686_01440 0.49 -0.5
316,825 + OH686_01440 0.49 -0.8
316,826 - OH686_01440 0.49 -0.1
316,966 + -0.5
316,966 + +1.3
316,966 + -0.7
316,966 + +1.0
316,967 - +0.0
316,967 - +0.6
316,967 - +0.2
316,982 - +0.0
316,982 - +0.1
317,038 + OH686_01445 0.16 +1.1
317,039 - OH686_01445 0.16 +0.4
317,039 - OH686_01445 0.16 +1.2
317,279 + OH686_01445 0.55 +0.2
317,279 + OH686_01445 0.55 +0.4
317,280 - OH686_01445 0.56 +0.1
317,623 + OH686_01450 0.31 +0.4
317,624 - OH686_01450 0.32 +0.7
317,624 - OH686_01450 0.32 +0.1
317,624 - OH686_01450 0.32 -0.4
317,653 - OH686_01450 0.44 -0.1
317,678 + OH686_01450 0.55 -0.2
317,678 + OH686_01450 0.55 -0.3
317,678 + OH686_01450 0.55 +0.6
317,678 + OH686_01450 0.55 +0.5
317,678 + OH686_01450 0.55 +0.5
317,679 - OH686_01450 0.55 +0.3
317,679 - OH686_01450 0.55 -0.1
317,679 - OH686_01450 0.55 -0.4
317,679 - OH686_01450 0.55 -1.6
317,679 - OH686_01450 0.55 +1.7
317,679 - OH686_01450 0.55 +0.2
318,013 + -0.4
318,013 + +0.5
318,014 - +0.5
318,028 + -0.2
318,028 + -0.7
318,028 + -0.1
318,028 + -0.5
318,028 + +1.8
318,028 + +0.3
318,028 + +0.5
318,028 + +0.2
318,029 - -0.3
318,029 - +0.1
318,029 - -2.4
318,029 - -2.1
318,029 - -0.2
318,141 + OH686_01455 0.15 +0.2
318,141 + OH686_01455 0.15 -0.2
318,141 + OH686_01455 0.15 -0.3
318,141 + OH686_01455 0.15 +0.1
318,141 + OH686_01455 0.15 +0.4
318,142 - OH686_01455 0.15 +0.5
318,142 - OH686_01455 0.15 -0.1
318,142 - OH686_01455 0.15 +0.6
318,146 + OH686_01455 0.15 -0.2
318,146 + OH686_01455 0.15 +0.2
318,147 - OH686_01455 0.15 -0.1
318,352 - OH686_01455 0.25 -0.1
318,499 + OH686_01455 0.32 -0.5
318,499 + OH686_01455 0.32 +0.5
318,500 - OH686_01455 0.32 +0.4
318,500 - OH686_01455 0.32 +0.0

Or see this region's nucleotide sequence