Strain Fitness in Pseudomonas sp. S08-1 around OH686_01175

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01170 and OH686_01175 are separated by 5 nucleotidesOH686_01175 and OH686_01180 are separated by 12 nucleotides OH686_01170: OH686_01170 - hypothetical protein, at 268,699 to 269,385 _01170 OH686_01175: OH686_01175 - hypothetical protein, at 269,391 to 269,915 _01175 OH686_01180: OH686_01180 - Phage tail sheath protein FI, at 269,928 to 271,508 _01180 Position (kb) 269 270Strain fitness (log2 ratio) -2 -1 0 1 2at 268.551 kb on + strandat 268.552 kb on - strandat 268.552 kb on - strandat 268.660 kb on + strandat 268.721 kb on + strandat 268.721 kb on + strandat 268.721 kb on + strandat 268.721 kb on + strandat 268.722 kb on - strandat 268.722 kb on - strandat 268.775 kb on + strand, within OH686_01170at 268.775 kb on + strand, within OH686_01170at 268.775 kb on + strand, within OH686_01170at 268.776 kb on - strand, within OH686_01170at 268.776 kb on - strand, within OH686_01170at 268.776 kb on - strand, within OH686_01170at 268.844 kb on + strand, within OH686_01170at 268.852 kb on + strand, within OH686_01170at 268.852 kb on + strand, within OH686_01170at 268.853 kb on - strand, within OH686_01170at 269.407 kb on + strandat 269.407 kb on + strandat 269.408 kb on - strandat 269.437 kb on + strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.554 kb on + strand, within OH686_01175at 269.554 kb on + strand, within OH686_01175at 269.554 kb on + strand, within OH686_01175at 269.554 kb on + strand, within OH686_01175at 269.555 kb on - strand, within OH686_01175at 269.584 kb on + strand, within OH686_01175at 269.584 kb on + strand, within OH686_01175at 269.584 kb on + strand, within OH686_01175at 269.584 kb on + strand, within OH686_01175at 269.836 kb on + strand, within OH686_01175at 269.836 kb on + strand, within OH686_01175at 269.837 kb on - strand, within OH686_01175at 269.837 kb on - strand, within OH686_01175at 269.875 kb on + strandat 269.876 kb on - strandat 269.876 kb on - strandat 269.876 kb on - strandat 269.929 kb on + strandat 269.929 kb on + strandat 269.929 kb on + strandat 269.929 kb on + strandat 269.930 kb on - strandat 270.073 kb on + strandat 270.073 kb on + strandat 270.073 kb on + strandat 270.073 kb on + strandat 270.073 kb on + strandat 270.073 kb on + strandat 270.074 kb on - strandat 270.074 kb on - strandat 270.074 kb on - strandat 270.187 kb on - strand, within OH686_01180at 270.187 kb on - strand, within OH686_01180at 270.187 kb on - strand, within OH686_01180at 270.253 kb on + strand, within OH686_01180at 270.253 kb on + strand, within OH686_01180at 270.253 kb on + strand, within OH686_01180at 270.253 kb on + strand, within OH686_01180at 270.254 kb on - strand, within OH686_01180at 270.254 kb on - strand, within OH686_01180at 270.254 kb on - strand, within OH686_01180at 270.391 kb on + strand, within OH686_01180at 270.391 kb on + strand, within OH686_01180at 270.391 kb on + strand, within OH686_01180at 270.392 kb on - strand, within OH686_01180at 270.392 kb on - strand, within OH686_01180at 270.392 kb on - strand, within OH686_01180at 270.405 kb on + strand, within OH686_01180at 270.459 kb on + strand, within OH686_01180at 270.460 kb on - strand, within OH686_01180at 270.557 kb on - strand, within OH686_01180at 270.559 kb on + strand, within OH686_01180at 270.559 kb on + strand, within OH686_01180at 270.559 kb on + strand, within OH686_01180at 270.560 kb on - strand, within OH686_01180at 270.560 kb on - strand, within OH686_01180at 270.560 kb on - strand, within OH686_01180at 270.706 kb on + strand, within OH686_01180at 270.707 kb on - strand, within OH686_01180at 270.707 kb on - strand, within OH686_01180

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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268,551 + -0.7
268,552 - +0.1
268,552 - -0.6
268,660 + -0.4
268,721 + +0.2
268,721 + +0.2
268,721 + +0.3
268,721 + -0.3
268,722 - -0.8
268,722 - -0.6
268,775 + OH686_01170 0.11 -0.2
268,775 + OH686_01170 0.11 +0.4
268,775 + OH686_01170 0.11 -1.2
268,776 - OH686_01170 0.11 -0.7
268,776 - OH686_01170 0.11 -0.3
268,776 - OH686_01170 0.11 +0.8
268,844 + OH686_01170 0.21 +0.7
268,852 + OH686_01170 0.22 +0.4
268,852 + OH686_01170 0.22 +0.1
268,853 - OH686_01170 0.22 -0.2
269,407 + -0.6
269,407 + +0.3
269,408 - +0.5
269,437 + -0.5
269,438 - +0.4
269,438 - -0.5
269,438 - -0.2
269,554 + OH686_01175 0.31 +0.5
269,554 + OH686_01175 0.31 +2.0
269,554 + OH686_01175 0.31 +0.6
269,554 + OH686_01175 0.31 +0.2
269,555 - OH686_01175 0.31 -0.1
269,584 + OH686_01175 0.37 +0.3
269,584 + OH686_01175 0.37 +0.7
269,584 + OH686_01175 0.37 -1.1
269,584 + OH686_01175 0.37 +0.6
269,836 + OH686_01175 0.85 +0.3
269,836 + OH686_01175 0.85 -1.1
269,837 - OH686_01175 0.85 +0.9
269,837 - OH686_01175 0.85 +0.2
269,875 + -1.0
269,876 - -0.5
269,876 - -1.3
269,876 - -1.3
269,929 + -0.2
269,929 + +0.4
269,929 + +0.4
269,929 + -0.8
269,930 - +0.6
270,073 + -0.7
270,073 + +0.6
270,073 + -1.0
270,073 + -0.2
270,073 + +0.3
270,073 + +0.2
270,074 - +0.2
270,074 - +0.2
270,074 - +0.8
270,187 - OH686_01180 0.16 -0.3
270,187 - OH686_01180 0.16 -0.7
270,187 - OH686_01180 0.16 +0.6
270,253 + OH686_01180 0.21 -0.3
270,253 + OH686_01180 0.21 +1.3
270,253 + OH686_01180 0.21 +0.3
270,253 + OH686_01180 0.21 -0.8
270,254 - OH686_01180 0.21 -1.0
270,254 - OH686_01180 0.21 +1.3
270,254 - OH686_01180 0.21 +0.4
270,391 + OH686_01180 0.29 -1.1
270,391 + OH686_01180 0.29 +0.4
270,391 + OH686_01180 0.29 -2.3
270,392 - OH686_01180 0.29 -0.0
270,392 - OH686_01180 0.29 +1.0
270,392 - OH686_01180 0.29 +0.3
270,405 + OH686_01180 0.30 +0.1
270,459 + OH686_01180 0.34 +0.1
270,460 - OH686_01180 0.34 -1.0
270,557 - OH686_01180 0.40 -1.0
270,559 + OH686_01180 0.40 +0.4
270,559 + OH686_01180 0.40 -0.4
270,559 + OH686_01180 0.40 -0.2
270,560 - OH686_01180 0.40 -0.2
270,560 - OH686_01180 0.40 +0.2
270,560 - OH686_01180 0.40 -0.4
270,706 + OH686_01180 0.49 -1.2
270,707 - OH686_01180 0.49 -0.2
270,707 - OH686_01180 0.49 +0.1

Or see this region's nucleotide sequence