Strain Fitness in Pseudomonas sp. S08-1 around OH686_00480

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00475 and OH686_00480 are separated by 18 nucleotidesOH686_00480 and OH686_00485 overlap by 4 nucleotidesOH686_00485 and OH686_00490 are separated by 118 nucleotides OH686_00475: OH686_00475 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] , at 92,627 to 93,649 _00475 OH686_00480: OH686_00480 - Lipase , at 93,668 to 94,015 _00480 OH686_00485: OH686_00485 - phosphohistidine phosphatase SixA, at 94,012 to 94,464 _00485 OH686_00490: OH686_00490 - Long-chain-fatty-acid--CoA ligase , at 94,583 to 96,247 _00490 Position (kb) 93 94 95Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 92.780 kb on + strand, within OH686_00475at 92.781 kb on - strand, within OH686_00475at 93.152 kb on + strand, within OH686_00475at 93.152 kb on + strand, within OH686_00475at 93.152 kb on + strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.153 kb on - strand, within OH686_00475at 93.206 kb on + strand, within OH686_00475at 93.206 kb on + strand, within OH686_00475at 93.206 kb on + strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.207 kb on - strand, within OH686_00475at 93.395 kb on + strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.396 kb on - strand, within OH686_00475at 93.478 kb on + strand, within OH686_00475at 93.478 kb on + strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.479 kb on - strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.521 kb on + strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.522 kb on - strand, within OH686_00475at 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.585 kb on + strandat 93.586 kb on - strandat 93.586 kb on - strandat 93.810 kb on - strand, within OH686_00480at 93.810 kb on - strand, within OH686_00480at 93.810 kb on - strand, within OH686_00480at 93.810 kb on - strand, within OH686_00480at 93.810 kb on - strand, within OH686_00480at 93.860 kb on + strand, within OH686_00480at 93.861 kb on - strand, within OH686_00480at 93.895 kb on + strand, within OH686_00480at 94.162 kb on + strand, within OH686_00485at 94.162 kb on + strand, within OH686_00485at 94.163 kb on - strand, within OH686_00485at 94.163 kb on - strand, within OH686_00485at 94.288 kb on + strand, within OH686_00485at 94.288 kb on + strand, within OH686_00485at 94.288 kb on + strand, within OH686_00485at 94.289 kb on - strand, within OH686_00485at 94.463 kb on - strandat 94.463 kb on - strandat 94.463 kb on - strandat 94.463 kb on - strandat 94.483 kb on + strandat 94.484 kb on - strandat 94.522 kb on + strandat 94.652 kb on + strandat 94.652 kb on + strandat 94.652 kb on + strandat 94.652 kb on + strandat 94.652 kb on + strandat 94.652 kb on + strandat 94.652 kb on + strandat 94.652 kb on + strandat 94.653 kb on - strandat 94.653 kb on - strandat 94.653 kb on - strandat 94.653 kb on - strandat 94.653 kb on - strandat 94.653 kb on - strandat 94.653 kb on - strandat 94.669 kb on - strandat 94.669 kb on - strandat 94.741 kb on - strandat 94.741 kb on - strandat 94.773 kb on + strand, within OH686_00490at 94.856 kb on + strand, within OH686_00490at 94.856 kb on + strand, within OH686_00490at 94.856 kb on + strand, within OH686_00490at 94.856 kb on + strand, within OH686_00490at 94.857 kb on - strand, within OH686_00490at 94.857 kb on - strand, within OH686_00490

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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92,780 + OH686_00475 0.15 -1.9
92,781 - OH686_00475 0.15 -4.1
93,152 + OH686_00475 0.51 -2.4
93,152 + OH686_00475 0.51 -3.8
93,152 + OH686_00475 0.51 -3.0
93,153 - OH686_00475 0.51 -1.7
93,153 - OH686_00475 0.51 -4.0
93,153 - OH686_00475 0.51 -2.3
93,153 - OH686_00475 0.51 -2.9
93,153 - OH686_00475 0.51 -3.4
93,153 - OH686_00475 0.51 -1.3
93,153 - OH686_00475 0.51 -1.5
93,206 + OH686_00475 0.57 -1.5
93,206 + OH686_00475 0.57 -4.2
93,206 + OH686_00475 0.57 -3.1
93,207 - OH686_00475 0.57 -2.9
93,207 - OH686_00475 0.57 -3.0
93,207 - OH686_00475 0.57 -0.5
93,207 - OH686_00475 0.57 -2.9
93,207 - OH686_00475 0.57 -1.6
93,395 + OH686_00475 0.75 -2.3
93,396 - OH686_00475 0.75 -3.1
93,396 - OH686_00475 0.75 -4.2
93,396 - OH686_00475 0.75 -2.3
93,396 - OH686_00475 0.75 -3.9
93,396 - OH686_00475 0.75 -0.5
93,396 - OH686_00475 0.75 -2.5
93,396 - OH686_00475 0.75 -0.7
93,396 - OH686_00475 0.75 -2.1
93,396 - OH686_00475 0.75 -3.0
93,478 + OH686_00475 0.83 -2.5
93,478 + OH686_00475 0.83 -4.4
93,479 - OH686_00475 0.83 -3.4
93,479 - OH686_00475 0.83 -4.2
93,479 - OH686_00475 0.83 -2.2
93,479 - OH686_00475 0.83 -0.4
93,479 - OH686_00475 0.83 -3.1
93,521 + OH686_00475 0.87 -3.1
93,521 + OH686_00475 0.87 -3.4
93,521 + OH686_00475 0.87 -2.2
93,521 + OH686_00475 0.87 -3.9
93,521 + OH686_00475 0.87 -1.9
93,521 + OH686_00475 0.87 -1.0
93,521 + OH686_00475 0.87 -3.4
93,521 + OH686_00475 0.87 -0.2
93,521 + OH686_00475 0.87 -2.4
93,521 + OH686_00475 0.87 -2.7
93,521 + OH686_00475 0.87 -0.7
93,521 + OH686_00475 0.87 -3.7
93,521 + OH686_00475 0.87 -4.2
93,521 + OH686_00475 0.87 -2.2
93,521 + OH686_00475 0.87 -3.3
93,521 + OH686_00475 0.87 -3.2
93,521 + OH686_00475 0.87 -3.3
93,521 + OH686_00475 0.87 -2.3
93,521 + OH686_00475 0.87 -3.5
93,521 + OH686_00475 0.87 -0.7
93,521 + OH686_00475 0.87 -4.7
93,521 + OH686_00475 0.87 -2.3
93,522 - OH686_00475 0.87 -2.2
93,522 - OH686_00475 0.87 -3.4
93,522 - OH686_00475 0.87 -1.6
93,522 - OH686_00475 0.87 +0.8
93,522 - OH686_00475 0.87 -2.3
93,522 - OH686_00475 0.87 -1.6
93,522 - OH686_00475 0.87 -2.7
93,522 - OH686_00475 0.87 -2.1
93,522 - OH686_00475 0.87 -2.6
93,522 - OH686_00475 0.87 -1.5
93,522 - OH686_00475 0.87 -2.0
93,522 - OH686_00475 0.87 -3.4
93,522 - OH686_00475 0.87 -2.4
93,522 - OH686_00475 0.87 -3.3
93,522 - OH686_00475 0.87 -0.7
93,522 - OH686_00475 0.87 -1.0
93,522 - OH686_00475 0.87 -3.3
93,522 - OH686_00475 0.87 -2.8
93,522 - OH686_00475 0.87 -0.5
93,522 - OH686_00475 0.87 -1.0
93,522 - OH686_00475 0.87 -2.8
93,522 - OH686_00475 0.87 -2.6
93,522 - OH686_00475 0.87 -2.3
93,522 - OH686_00475 0.87 -2.0
93,522 - OH686_00475 0.87 -3.0
93,522 - OH686_00475 0.87 -2.1
93,585 + +0.1
93,585 + +0.4
93,585 + -0.9
93,585 + +0.3
93,585 + +0.3
93,585 + -0.1
93,585 + -1.2
93,586 - -3.1
93,586 - -1.9
93,810 - OH686_00480 0.41 +0.6
93,810 - OH686_00480 0.41 -0.7
93,810 - OH686_00480 0.41 +0.6
93,810 - OH686_00480 0.41 +1.1
93,810 - OH686_00480 0.41 -0.3
93,860 + OH686_00480 0.55 +0.2
93,861 - OH686_00480 0.55 -0.0
93,895 + OH686_00480 0.65 +0.3
94,162 + OH686_00485 0.33 +0.8
94,162 + OH686_00485 0.33 -0.2
94,163 - OH686_00485 0.33 -0.6
94,163 - OH686_00485 0.33 +0.2
94,288 + OH686_00485 0.61 +0.0
94,288 + OH686_00485 0.61 +0.3
94,288 + OH686_00485 0.61 -0.6
94,289 - OH686_00485 0.61 -0.5
94,463 - -0.4
94,463 - +0.5
94,463 - +0.4
94,463 - +0.8
94,483 + -0.1
94,484 - +0.1
94,522 + +0.2
94,652 + -0.3
94,652 + +1.2
94,652 + +0.8
94,652 + -1.0
94,652 + +0.8
94,652 + -1.1
94,652 + +0.8
94,652 + -0.4
94,653 - +0.6
94,653 - +0.2
94,653 - -0.2
94,653 - -0.6
94,653 - -0.3
94,653 - +0.8
94,653 - -0.5
94,669 - +0.6
94,669 - -2.5
94,741 - -1.0
94,741 - -0.2
94,773 + OH686_00490 0.11 +0.3
94,856 + OH686_00490 0.16 -0.6
94,856 + OH686_00490 0.16 -0.7
94,856 + OH686_00490 0.16 -1.0
94,856 + OH686_00490 0.16 -1.2
94,857 - OH686_00490 0.16 -0.0
94,857 - OH686_00490 0.16 -1.0

Or see this region's nucleotide sequence