Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2656

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2655 and Echvi_2656 overlap by 17 nucleotidesEchvi_2656 and Echvi_2657 are separated by 172 nucleotides Echvi_2655: Echvi_2655 - RNA polymerase sigma factor, sigma-70 family, at 3,143,376 to 3,144,029 _2655 Echvi_2656: Echvi_2656 - Fe2+-dicitrate sensor, membrane component, at 3,144,013 to 3,145,074 _2656 Echvi_2657: Echvi_2657 - TonB-linked outer membrane protein, SusC/RagA family, at 3,145,247 to 3,148,663 _2657 Position (kb) 3144 3145 3146Strain fitness (log2 ratio) -2 -1 0 1 2at 3143.047 kb on + strandat 3143.070 kb on + strandat 3143.076 kb on + strandat 3143.100 kb on + strandat 3143.101 kb on - strandat 3143.101 kb on - strandat 3143.104 kb on + strandat 3143.105 kb on - strandat 3143.105 kb on - strandat 3143.449 kb on + strand, within Echvi_2655at 3143.460 kb on + strand, within Echvi_2655at 3143.523 kb on - strand, within Echvi_2655at 3143.529 kb on - strand, within Echvi_2655at 3143.555 kb on - strand, within Echvi_2655at 3143.557 kb on - strand, within Echvi_2655at 3143.557 kb on - strand, within Echvi_2655at 3143.557 kb on - strand, within Echvi_2655at 3143.558 kb on + strand, within Echvi_2655at 3143.562 kb on + strand, within Echvi_2655at 3143.563 kb on - strand, within Echvi_2655at 3143.563 kb on - strand, within Echvi_2655at 3143.580 kb on - strand, within Echvi_2655at 3143.642 kb on + strand, within Echvi_2655at 3143.664 kb on - strand, within Echvi_2655at 3143.667 kb on - strand, within Echvi_2655at 3143.667 kb on - strand, within Echvi_2655at 3143.676 kb on + strand, within Echvi_2655at 3143.885 kb on - strand, within Echvi_2655at 3143.885 kb on - strand, within Echvi_2655at 3143.914 kb on - strand, within Echvi_2655at 3143.974 kb on - strandat 3143.974 kb on - strandat 3144.001 kb on + strandat 3144.002 kb on - strandat 3144.005 kb on + strandat 3144.006 kb on - strandat 3144.049 kb on - strandat 3144.049 kb on - strandat 3144.055 kb on + strandat 3144.056 kb on - strandat 3144.211 kb on + strand, within Echvi_2656at 3144.220 kb on + strand, within Echvi_2656at 3144.221 kb on - strand, within Echvi_2656at 3144.223 kb on - strand, within Echvi_2656at 3144.223 kb on - strand, within Echvi_2656at 3144.254 kb on - strand, within Echvi_2656at 3144.273 kb on + strand, within Echvi_2656at 3144.357 kb on - strand, within Echvi_2656at 3144.357 kb on - strand, within Echvi_2656at 3144.357 kb on - strand, within Echvi_2656at 3144.357 kb on - strand, within Echvi_2656at 3144.357 kb on - strand, within Echvi_2656at 3144.451 kb on - strand, within Echvi_2656at 3144.502 kb on + strand, within Echvi_2656at 3144.517 kb on - strand, within Echvi_2656at 3144.666 kb on + strand, within Echvi_2656at 3144.667 kb on - strand, within Echvi_2656at 3144.667 kb on - strand, within Echvi_2656at 3144.669 kb on + strand, within Echvi_2656at 3144.669 kb on + strand, within Echvi_2656at 3144.671 kb on + strand, within Echvi_2656at 3144.672 kb on - strand, within Echvi_2656at 3144.721 kb on - strand, within Echvi_2656at 3144.721 kb on - strand, within Echvi_2656at 3144.724 kb on + strand, within Echvi_2656at 3144.725 kb on - strand, within Echvi_2656at 3144.725 kb on - strand, within Echvi_2656at 3144.827 kb on + strand, within Echvi_2656at 3144.827 kb on + strand, within Echvi_2656at 3144.828 kb on - strand, within Echvi_2656at 3144.828 kb on - strand, within Echvi_2656at 3144.828 kb on - strand, within Echvi_2656at 3144.828 kb on - strand, within Echvi_2656at 3144.844 kb on - strand, within Echvi_2656at 3144.844 kb on - strand, within Echvi_2656at 3144.848 kb on - strand, within Echvi_2656at 3144.848 kb on - strand, within Echvi_2656at 3144.848 kb on - strand, within Echvi_2656at 3144.848 kb on - strand, within Echvi_2656at 3144.930 kb on - strand, within Echvi_2656at 3144.964 kb on + strand, within Echvi_2656at 3144.964 kb on + strand, within Echvi_2656at 3144.965 kb on - strand, within Echvi_2656at 3144.965 kb on - strand, within Echvi_2656at 3144.965 kb on - strand, within Echvi_2656at 3144.985 kb on + strandat 3144.985 kb on + strandat 3145.008 kb on - strandat 3145.032 kb on - strandat 3145.032 kb on - strandat 3145.055 kb on - strandat 3145.055 kb on - strandat 3145.055 kb on - strandat 3145.055 kb on - strandat 3145.200 kb on - strandat 3145.230 kb on + strandat 3145.233 kb on + strandat 3145.260 kb on - strandat 3145.277 kb on - strandat 3145.475 kb on - strandat 3145.559 kb on - strandat 3145.567 kb on + strandat 3145.695 kb on + strand, within Echvi_2657at 3145.695 kb on + strand, within Echvi_2657at 3145.739 kb on + strand, within Echvi_2657at 3145.739 kb on + strand, within Echvi_2657at 3145.825 kb on + strand, within Echvi_2657at 3145.854 kb on + strand, within Echvi_2657at 3145.855 kb on - strand, within Echvi_2657at 3145.886 kb on + strand, within Echvi_2657

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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3,143,047 + -0.6
3,143,070 + +0.6
3,143,076 + +1.3
3,143,100 + +0.7
3,143,101 - -0.0
3,143,101 - +0.3
3,143,104 + +0.1
3,143,105 - +0.1
3,143,105 - -0.7
3,143,449 + Echvi_2655 0.11 +0.5
3,143,460 + Echvi_2655 0.13 +0.4
3,143,523 - Echvi_2655 0.22 -0.1
3,143,529 - Echvi_2655 0.23 +0.7
3,143,555 - Echvi_2655 0.27 +0.5
3,143,557 - Echvi_2655 0.28 +0.3
3,143,557 - Echvi_2655 0.28 +1.2
3,143,557 - Echvi_2655 0.28 +0.0
3,143,558 + Echvi_2655 0.28 -0.4
3,143,562 + Echvi_2655 0.28 -1.2
3,143,563 - Echvi_2655 0.29 -0.9
3,143,563 - Echvi_2655 0.29 -1.7
3,143,580 - Echvi_2655 0.31 +0.5
3,143,642 + Echvi_2655 0.41 +0.5
3,143,664 - Echvi_2655 0.44 -0.5
3,143,667 - Echvi_2655 0.44 +0.7
3,143,667 - Echvi_2655 0.44 -0.2
3,143,676 + Echvi_2655 0.46 -0.7
3,143,885 - Echvi_2655 0.78 +0.0
3,143,885 - Echvi_2655 0.78 -0.7
3,143,914 - Echvi_2655 0.82 +0.4
3,143,974 - -0.1
3,143,974 - +0.2
3,144,001 + +0.1
3,144,002 - +0.1
3,144,005 + -0.7
3,144,006 - +0.1
3,144,049 - -0.7
3,144,049 - -0.9
3,144,055 + +1.3
3,144,056 - -0.9
3,144,211 + Echvi_2656 0.19 -1.1
3,144,220 + Echvi_2656 0.19 +0.1
3,144,221 - Echvi_2656 0.20 -1.1
3,144,223 - Echvi_2656 0.20 +0.2
3,144,223 - Echvi_2656 0.20 +0.1
3,144,254 - Echvi_2656 0.23 +1.5
3,144,273 + Echvi_2656 0.24 -0.9
3,144,357 - Echvi_2656 0.32 -0.5
3,144,357 - Echvi_2656 0.32 -0.3
3,144,357 - Echvi_2656 0.32 -0.8
3,144,357 - Echvi_2656 0.32 +0.2
3,144,357 - Echvi_2656 0.32 -0.1
3,144,451 - Echvi_2656 0.41 +0.1
3,144,502 + Echvi_2656 0.46 -0.9
3,144,517 - Echvi_2656 0.47 -0.5
3,144,666 + Echvi_2656 0.61 +0.3
3,144,667 - Echvi_2656 0.62 -0.2
3,144,667 - Echvi_2656 0.62 -0.2
3,144,669 + Echvi_2656 0.62 +0.0
3,144,669 + Echvi_2656 0.62 -1.0
3,144,671 + Echvi_2656 0.62 -0.1
3,144,672 - Echvi_2656 0.62 -0.5
3,144,721 - Echvi_2656 0.67 -0.5
3,144,721 - Echvi_2656 0.67 -1.4
3,144,724 + Echvi_2656 0.67 +0.5
3,144,725 - Echvi_2656 0.67 +0.4
3,144,725 - Echvi_2656 0.67 +0.2
3,144,827 + Echvi_2656 0.77 -0.0
3,144,827 + Echvi_2656 0.77 -2.6
3,144,828 - Echvi_2656 0.77 -0.3
3,144,828 - Echvi_2656 0.77 -0.4
3,144,828 - Echvi_2656 0.77 +0.7
3,144,828 - Echvi_2656 0.77 +0.8
3,144,844 - Echvi_2656 0.78 -0.0
3,144,844 - Echvi_2656 0.78 -1.2
3,144,848 - Echvi_2656 0.79 +1.8
3,144,848 - Echvi_2656 0.79 -0.9
3,144,848 - Echvi_2656 0.79 -0.3
3,144,848 - Echvi_2656 0.79 -1.2
3,144,930 - Echvi_2656 0.86 -1.4
3,144,964 + Echvi_2656 0.90 -0.4
3,144,964 + Echvi_2656 0.90 -0.5
3,144,965 - Echvi_2656 0.90 -0.4
3,144,965 - Echvi_2656 0.90 -0.8
3,144,965 - Echvi_2656 0.90 +0.3
3,144,985 + -0.7
3,144,985 + +0.2
3,145,008 - -0.5
3,145,032 - +0.2
3,145,032 - +1.8
3,145,055 - -0.2
3,145,055 - -1.4
3,145,055 - -1.2
3,145,055 - -0.4
3,145,200 - -0.4
3,145,230 + +0.4
3,145,233 + -0.8
3,145,260 - -1.4
3,145,277 - -1.0
3,145,475 - -0.6
3,145,559 - +0.3
3,145,567 + -1.1
3,145,695 + Echvi_2657 0.13 -0.2
3,145,695 + Echvi_2657 0.13 +0.2
3,145,739 + Echvi_2657 0.14 +0.7
3,145,739 + Echvi_2657 0.14 -0.2
3,145,825 + Echvi_2657 0.17 -0.4
3,145,854 + Echvi_2657 0.18 -0.5
3,145,855 - Echvi_2657 0.18 +0.5
3,145,886 + Echvi_2657 0.19 -1.2

Or see this region's nucleotide sequence