Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2483

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2481 and Echvi_2482 are separated by 187 nucleotidesEchvi_2482 and Echvi_2483 are separated by 202 nucleotidesEchvi_2483 and Echvi_2484 are separated by 10 nucleotides Echvi_2481: Echvi_2481 - fumarylacetoacetase, at 2,946,772 to 2,948,049 _2481 Echvi_2482: Echvi_2482 - hypothetical protein, at 2,948,237 to 2,948,695 _2482 Echvi_2483: Echvi_2483 - Protein tyrosine/serine phosphatase, at 2,948,898 to 2,949,716 _2483 Echvi_2484: Echvi_2484 - TonB-dependent receptor, at 2,949,727 to 2,952,696 _2484 Position (kb) 2948 2949 2950Strain fitness (log2 ratio) -2 -1 0 1 2at 2948.012 kb on + strandat 2948.012 kb on + strandat 2948.012 kb on + strandat 2948.012 kb on + strandat 2948.013 kb on - strandat 2948.016 kb on + strandat 2948.016 kb on + strandat 2948.017 kb on - strandat 2948.017 kb on - strandat 2948.070 kb on - strandat 2948.074 kb on + strandat 2948.113 kb on + strandat 2948.119 kb on + strandat 2948.119 kb on + strandat 2948.150 kb on + strandat 2948.151 kb on - strandat 2948.151 kb on - strandat 2948.151 kb on - strandat 2948.151 kb on - strandat 2948.164 kb on + strandat 2948.165 kb on - strandat 2948.168 kb on + strandat 2948.169 kb on - strandat 2948.172 kb on + strandat 2948.172 kb on + strandat 2948.173 kb on - strandat 2948.173 kb on - strandat 2948.173 kb on - strandat 2948.179 kb on - strandat 2948.179 kb on - strandat 2948.179 kb on - strandat 2948.195 kb on - strandat 2948.306 kb on + strand, within Echvi_2482at 2948.342 kb on + strand, within Echvi_2482at 2948.342 kb on + strand, within Echvi_2482at 2948.343 kb on - strand, within Echvi_2482at 2948.358 kb on + strand, within Echvi_2482at 2948.387 kb on - strand, within Echvi_2482at 2948.411 kb on + strand, within Echvi_2482at 2948.411 kb on + strand, within Echvi_2482at 2948.412 kb on - strand, within Echvi_2482at 2948.415 kb on - strand, within Echvi_2482at 2948.415 kb on - strand, within Echvi_2482at 2948.500 kb on + strand, within Echvi_2482at 2948.501 kb on - strand, within Echvi_2482at 2948.507 kb on - strand, within Echvi_2482at 2948.561 kb on - strand, within Echvi_2482at 2948.581 kb on + strand, within Echvi_2482at 2948.581 kb on + strand, within Echvi_2482at 2948.606 kb on - strand, within Echvi_2482at 2948.900 kb on - strandat 2948.910 kb on + strandat 2948.911 kb on - strandat 2948.989 kb on + strand, within Echvi_2483at 2948.990 kb on - strand, within Echvi_2483at 2949.025 kb on + strand, within Echvi_2483at 2949.047 kb on + strand, within Echvi_2483at 2949.047 kb on + strand, within Echvi_2483at 2949.047 kb on + strand, within Echvi_2483at 2949.047 kb on + strand, within Echvi_2483at 2949.048 kb on - strand, within Echvi_2483at 2949.048 kb on - strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.049 kb on + strand, within Echvi_2483at 2949.050 kb on - strand, within Echvi_2483at 2949.050 kb on - strand, within Echvi_2483at 2949.050 kb on - strand, within Echvi_2483at 2949.050 kb on - strand, within Echvi_2483at 2949.054 kb on - strand, within Echvi_2483at 2949.077 kb on - strand, within Echvi_2483at 2949.131 kb on - strand, within Echvi_2483at 2949.170 kb on - strand, within Echvi_2483at 2949.170 kb on - strand, within Echvi_2483at 2949.186 kb on - strand, within Echvi_2483at 2949.366 kb on - strand, within Echvi_2483at 2949.383 kb on + strand, within Echvi_2483at 2949.383 kb on + strand, within Echvi_2483at 2949.384 kb on - strand, within Echvi_2483at 2949.384 kb on - strand, within Echvi_2483at 2949.384 kb on - strand, within Echvi_2483at 2949.559 kb on + strand, within Echvi_2483at 2949.601 kb on - strand, within Echvi_2483at 2949.658 kb on + strandat 2949.659 kb on - strandat 2949.659 kb on - strandat 2949.659 kb on - strandat 2949.659 kb on - strandat 2949.662 kb on + strandat 2949.719 kb on + strandat 2949.720 kb on - strandat 2949.771 kb on - strandat 2949.812 kb on + strandat 2949.821 kb on + strandat 2949.822 kb on - strandat 2949.822 kb on - strandat 2949.867 kb on + strandat 2949.867 kb on + strandat 2949.868 kb on - strandat 2949.868 kb on - strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.926 kb on + strandat 2949.927 kb on - strandat 2949.927 kb on - strandat 2949.929 kb on + strandat 2950.053 kb on + strandat 2950.054 kb on - strand, within Echvi_2484at 2950.257 kb on - strand, within Echvi_2484at 2950.311 kb on + strand, within Echvi_2484at 2950.312 kb on - strand, within Echvi_2484at 2950.317 kb on + strand, within Echvi_2484at 2950.505 kb on + strand, within Echvi_2484at 2950.522 kb on + strand, within Echvi_2484at 2950.523 kb on - strand, within Echvi_2484at 2950.540 kb on - strand, within Echvi_2484at 2950.541 kb on + strand, within Echvi_2484at 2950.541 kb on + strand, within Echvi_2484at 2950.541 kb on + strand, within Echvi_2484at 2950.542 kb on - strand, within Echvi_2484at 2950.542 kb on - strand, within Echvi_2484at 2950.542 kb on - strand, within Echvi_2484at 2950.574 kb on + strand, within Echvi_2484at 2950.574 kb on + strand, within Echvi_2484at 2950.574 kb on + strand, within Echvi_2484at 2950.575 kb on - strand, within Echvi_2484at 2950.575 kb on - strand, within Echvi_2484at 2950.700 kb on + strand, within Echvi_2484at 2950.701 kb on - strand, within Echvi_2484at 2950.701 kb on - strand, within Echvi_2484at 2950.701 kb on - strand, within Echvi_2484at 2950.701 kb on - strand, within Echvi_2484at 2950.716 kb on - strand, within Echvi_2484

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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2,948,012 + -0.6
2,948,012 + -0.8
2,948,012 + -0.4
2,948,012 + -0.6
2,948,013 - -0.6
2,948,016 + -0.4
2,948,016 + -0.0
2,948,017 - -0.5
2,948,017 - +0.5
2,948,070 - -0.2
2,948,074 + -0.1
2,948,113 + -0.8
2,948,119 + +1.3
2,948,119 + -0.1
2,948,150 + -0.4
2,948,151 - -0.5
2,948,151 - -0.0
2,948,151 - -0.1
2,948,151 - -2.0
2,948,164 + +0.5
2,948,165 - -0.0
2,948,168 + +1.1
2,948,169 - +0.3
2,948,172 + -0.3
2,948,172 + +0.8
2,948,173 - +0.1
2,948,173 - -0.9
2,948,173 - -0.8
2,948,179 - -0.3
2,948,179 - -0.0
2,948,179 - +0.2
2,948,195 - +0.2
2,948,306 + Echvi_2482 0.15 -0.7
2,948,342 + Echvi_2482 0.23 -0.9
2,948,342 + Echvi_2482 0.23 -0.0
2,948,343 - Echvi_2482 0.23 -0.4
2,948,358 + Echvi_2482 0.26 -0.0
2,948,387 - Echvi_2482 0.33 -0.4
2,948,411 + Echvi_2482 0.38 +0.3
2,948,411 + Echvi_2482 0.38 +0.1
2,948,412 - Echvi_2482 0.38 -1.0
2,948,415 - Echvi_2482 0.39 -0.7
2,948,415 - Echvi_2482 0.39 +0.2
2,948,500 + Echvi_2482 0.57 +1.8
2,948,501 - Echvi_2482 0.58 -0.1
2,948,507 - Echvi_2482 0.59 -0.6
2,948,561 - Echvi_2482 0.71 +0.6
2,948,581 + Echvi_2482 0.75 -0.4
2,948,581 + Echvi_2482 0.75 +0.3
2,948,606 - Echvi_2482 0.80 +0.7
2,948,900 - -1.0
2,948,910 + -0.5
2,948,911 - -0.2
2,948,989 + Echvi_2483 0.11 -0.2
2,948,990 - Echvi_2483 0.11 -0.7
2,949,025 + Echvi_2483 0.16 -1.2
2,949,047 + Echvi_2483 0.18 -0.3
2,949,047 + Echvi_2483 0.18 -0.5
2,949,047 + Echvi_2483 0.18 +0.0
2,949,047 + Echvi_2483 0.18 -1.2
2,949,048 - Echvi_2483 0.18 -0.6
2,949,048 - Echvi_2483 0.18 +0.2
2,949,049 + Echvi_2483 0.18 -1.2
2,949,049 + Echvi_2483 0.18 -0.2
2,949,049 + Echvi_2483 0.18 -0.5
2,949,049 + Echvi_2483 0.18 -0.3
2,949,049 + Echvi_2483 0.18 -0.4
2,949,049 + Echvi_2483 0.18 -1.4
2,949,049 + Echvi_2483 0.18 -1.8
2,949,050 - Echvi_2483 0.19 +0.2
2,949,050 - Echvi_2483 0.19 -0.1
2,949,050 - Echvi_2483 0.19 +0.0
2,949,050 - Echvi_2483 0.19 +0.5
2,949,054 - Echvi_2483 0.19 -1.3
2,949,077 - Echvi_2483 0.22 -0.2
2,949,131 - Echvi_2483 0.28 -0.5
2,949,170 - Echvi_2483 0.33 -1.2
2,949,170 - Echvi_2483 0.33 -1.4
2,949,186 - Echvi_2483 0.35 +0.9
2,949,366 - Echvi_2483 0.57 -0.2
2,949,383 + Echvi_2483 0.59 -0.9
2,949,383 + Echvi_2483 0.59 -0.0
2,949,384 - Echvi_2483 0.59 -0.6
2,949,384 - Echvi_2483 0.59 -0.7
2,949,384 - Echvi_2483 0.59 +1.6
2,949,559 + Echvi_2483 0.81 -0.5
2,949,601 - Echvi_2483 0.86 -0.3
2,949,658 + +0.1
2,949,659 - -0.3
2,949,659 - +0.7
2,949,659 - -0.2
2,949,659 - -0.6
2,949,662 + +0.9
2,949,719 + -1.0
2,949,720 - -0.8
2,949,771 - +0.2
2,949,812 + +1.0
2,949,821 + -0.0
2,949,822 - -0.4
2,949,822 - -1.1
2,949,867 + +1.9
2,949,867 + -0.8
2,949,868 - -2.4
2,949,868 - -1.2
2,949,926 + +0.5
2,949,926 + -1.1
2,949,926 + +0.4
2,949,926 + -2.0
2,949,926 + +0.1
2,949,926 + -0.7
2,949,926 + -0.5
2,949,927 - -0.4
2,949,927 - +0.2
2,949,929 + +0.4
2,950,053 + +0.3
2,950,054 - Echvi_2484 0.11 -0.6
2,950,257 - Echvi_2484 0.18 +0.2
2,950,311 + Echvi_2484 0.20 +0.6
2,950,312 - Echvi_2484 0.20 +0.2
2,950,317 + Echvi_2484 0.20 +0.6
2,950,505 + Echvi_2484 0.26 +0.2
2,950,522 + Echvi_2484 0.27 -0.5
2,950,523 - Echvi_2484 0.27 -0.3
2,950,540 - Echvi_2484 0.27 +0.8
2,950,541 + Echvi_2484 0.27 -0.5
2,950,541 + Echvi_2484 0.27 -0.5
2,950,541 + Echvi_2484 0.27 +0.3
2,950,542 - Echvi_2484 0.27 -0.9
2,950,542 - Echvi_2484 0.27 -1.1
2,950,542 - Echvi_2484 0.27 +0.6
2,950,574 + Echvi_2484 0.29 -1.5
2,950,574 + Echvi_2484 0.29 +0.7
2,950,574 + Echvi_2484 0.29 -0.7
2,950,575 - Echvi_2484 0.29 +0.0
2,950,575 - Echvi_2484 0.29 -0.8
2,950,700 + Echvi_2484 0.33 +0.7
2,950,701 - Echvi_2484 0.33 +0.9
2,950,701 - Echvi_2484 0.33 +0.8
2,950,701 - Echvi_2484 0.33 -1.9
2,950,701 - Echvi_2484 0.33 +0.4
2,950,716 - Echvi_2484 0.33 +0.8

Or see this region's nucleotide sequence