Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1887

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1885 and Echvi_1886 overlap by 4 nucleotidesEchvi_1886 and Echvi_1887 are separated by 59 nucleotidesEchvi_1887 and Echvi_1888 are separated by 110 nucleotides Echvi_1885: Echvi_1885 - RNAse H-fold protein YqgF, at 2,213,214 to 2,213,627 _1885 Echvi_1886: Echvi_1886 - peptide deformylase, at 2,213,624 to 2,214,178 _1886 Echvi_1887: Echvi_1887 - Predicted amidohydrolase, at 2,214,238 to 2,215,038 _1887 Echvi_1888: Echvi_1888 - hypothetical protein, at 2,215,149 to 2,217,275 _1888 Position (kb) 2214 2215 2216Strain fitness (log2 ratio) -2 -1 0 1at 2213.602 kb on + strandat 2213.602 kb on + strandat 2213.623 kb on + strandat 2213.623 kb on + strandat 2214.177 kb on - strandat 2214.179 kb on + strandat 2214.180 kb on - strandat 2214.180 kb on - strandat 2214.227 kb on - strandat 2214.254 kb on + strandat 2214.261 kb on + strandat 2214.262 kb on - strandat 2214.277 kb on + strandat 2214.344 kb on + strand, within Echvi_1887at 2214.344 kb on + strand, within Echvi_1887at 2214.376 kb on - strand, within Echvi_1887at 2214.423 kb on + strand, within Echvi_1887at 2214.424 kb on - strand, within Echvi_1887at 2214.576 kb on + strand, within Echvi_1887at 2214.602 kb on - strand, within Echvi_1887at 2214.667 kb on + strand, within Echvi_1887at 2214.686 kb on + strand, within Echvi_1887at 2214.699 kb on + strand, within Echvi_1887at 2214.700 kb on - strand, within Echvi_1887at 2214.742 kb on + strand, within Echvi_1887at 2214.742 kb on + strand, within Echvi_1887at 2214.742 kb on + strand, within Echvi_1887at 2214.743 kb on - strand, within Echvi_1887at 2214.744 kb on + strand, within Echvi_1887at 2214.745 kb on - strand, within Echvi_1887at 2214.745 kb on - strand, within Echvi_1887at 2214.789 kb on - strand, within Echvi_1887at 2214.792 kb on - strand, within Echvi_1887at 2214.815 kb on + strand, within Echvi_1887at 2214.815 kb on + strand, within Echvi_1887at 2214.816 kb on - strand, within Echvi_1887at 2214.816 kb on - strand, within Echvi_1887at 2214.816 kb on - strand, within Echvi_1887at 2214.816 kb on - strand, within Echvi_1887at 2214.816 kb on - strand, within Echvi_1887at 2214.816 kb on - strand, within Echvi_1887at 2214.820 kb on + strand, within Echvi_1887at 2214.822 kb on + strand, within Echvi_1887at 2215.043 kb on - strandat 2215.110 kb on + strandat 2215.150 kb on + strandat 2215.151 kb on - strandat 2215.156 kb on - strandat 2215.196 kb on + strandat 2215.196 kb on + strandat 2215.197 kb on - strandat 2215.197 kb on - strandat 2215.197 kb on - strandat 2215.211 kb on - strandat 2215.232 kb on + strandat 2215.233 kb on - strandat 2215.233 kb on - strandat 2215.233 kb on - strandat 2215.339 kb on + strandat 2215.380 kb on + strand, within Echvi_1888at 2215.380 kb on + strand, within Echvi_1888at 2215.380 kb on + strand, within Echvi_1888at 2215.381 kb on - strand, within Echvi_1888at 2215.381 kb on - strand, within Echvi_1888at 2215.381 kb on - strand, within Echvi_1888at 2215.392 kb on + strand, within Echvi_1888at 2215.412 kb on + strand, within Echvi_1888at 2215.449 kb on - strand, within Echvi_1888at 2215.449 kb on - strand, within Echvi_1888at 2215.449 kb on - strand, within Echvi_1888at 2215.586 kb on + strand, within Echvi_1888at 2215.586 kb on + strand, within Echvi_1888at 2215.600 kb on + strand, within Echvi_1888at 2215.600 kb on + strand, within Echvi_1888at 2215.600 kb on + strand, within Echvi_1888at 2215.623 kb on + strand, within Echvi_1888at 2215.624 kb on - strand, within Echvi_1888at 2215.624 kb on - strand, within Echvi_1888at 2215.630 kb on + strand, within Echvi_1888at 2215.630 kb on + strand, within Echvi_1888at 2215.631 kb on - strand, within Echvi_1888at 2215.631 kb on - strand, within Echvi_1888at 2215.631 kb on - strand, within Echvi_1888at 2215.632 kb on + strand, within Echvi_1888at 2215.632 kb on + strand, within Echvi_1888at 2215.632 kb on + strand, within Echvi_1888at 2215.632 kb on + strand, within Echvi_1888at 2215.632 kb on + strand, within Echvi_1888at 2215.632 kb on + strand, within Echvi_1888at 2215.632 kb on + strand, within Echvi_1888at 2215.632 kb on + strand, within Echvi_1888at 2215.633 kb on - strand, within Echvi_1888at 2215.633 kb on - strand, within Echvi_1888at 2215.749 kb on + strand, within Echvi_1888at 2215.749 kb on + strand, within Echvi_1888at 2215.749 kb on + strand, within Echvi_1888at 2215.750 kb on - strand, within Echvi_1888at 2215.792 kb on - strand, within Echvi_1888at 2215.915 kb on - strand, within Echvi_1888at 2215.994 kb on + strand, within Echvi_1888

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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2,213,602 + +0.1
2,213,602 + +0.9
2,213,623 + -0.5
2,213,623 + -0.5
2,214,177 - -0.2
2,214,179 + -0.4
2,214,180 - -0.1
2,214,180 - +0.1
2,214,227 - -1.8
2,214,254 + -1.2
2,214,261 + -1.1
2,214,262 - -0.0
2,214,277 + -0.7
2,214,344 + Echvi_1887 0.13 -1.1
2,214,344 + Echvi_1887 0.13 -0.7
2,214,376 - Echvi_1887 0.17 -1.3
2,214,423 + Echvi_1887 0.23 -0.9
2,214,424 - Echvi_1887 0.23 -0.0
2,214,576 + Echvi_1887 0.42 -0.4
2,214,602 - Echvi_1887 0.45 +0.1
2,214,667 + Echvi_1887 0.54 +0.2
2,214,686 + Echvi_1887 0.56 -0.7
2,214,699 + Echvi_1887 0.58 -0.2
2,214,700 - Echvi_1887 0.58 -0.3
2,214,742 + Echvi_1887 0.63 -0.4
2,214,742 + Echvi_1887 0.63 -0.3
2,214,742 + Echvi_1887 0.63 -1.2
2,214,743 - Echvi_1887 0.63 -0.4
2,214,744 + Echvi_1887 0.63 -0.8
2,214,745 - Echvi_1887 0.63 -1.3
2,214,745 - Echvi_1887 0.63 -0.1
2,214,789 - Echvi_1887 0.69 -0.5
2,214,792 - Echvi_1887 0.69 -1.1
2,214,815 + Echvi_1887 0.72 +0.1
2,214,815 + Echvi_1887 0.72 -0.1
2,214,816 - Echvi_1887 0.72 +0.0
2,214,816 - Echvi_1887 0.72 -1.6
2,214,816 - Echvi_1887 0.72 -0.4
2,214,816 - Echvi_1887 0.72 -0.6
2,214,816 - Echvi_1887 0.72 -0.0
2,214,816 - Echvi_1887 0.72 -0.4
2,214,820 + Echvi_1887 0.73 +0.2
2,214,822 + Echvi_1887 0.73 -0.4
2,215,043 - +1.2
2,215,110 + +0.1
2,215,150 + -0.4
2,215,151 - +0.1
2,215,156 - +0.1
2,215,196 + +0.0
2,215,196 + -1.2
2,215,197 - +0.5
2,215,197 - +0.8
2,215,197 - +0.6
2,215,211 - +0.1
2,215,232 + +0.1
2,215,233 - +0.1
2,215,233 - +0.9
2,215,233 - -0.5
2,215,339 + +0.1
2,215,380 + Echvi_1888 0.11 -0.6
2,215,380 + Echvi_1888 0.11 -0.2
2,215,380 + Echvi_1888 0.11 -0.4
2,215,381 - Echvi_1888 0.11 +0.7
2,215,381 - Echvi_1888 0.11 +0.5
2,215,381 - Echvi_1888 0.11 +0.7
2,215,392 + Echvi_1888 0.11 +0.4
2,215,412 + Echvi_1888 0.12 +0.7
2,215,449 - Echvi_1888 0.14 +1.6
2,215,449 - Echvi_1888 0.14 +0.0
2,215,449 - Echvi_1888 0.14 -0.4
2,215,586 + Echvi_1888 0.21 +0.3
2,215,586 + Echvi_1888 0.21 -1.2
2,215,600 + Echvi_1888 0.21 +0.2
2,215,600 + Echvi_1888 0.21 -0.3
2,215,600 + Echvi_1888 0.21 +0.4
2,215,623 + Echvi_1888 0.22 -0.9
2,215,624 - Echvi_1888 0.22 -0.9
2,215,624 - Echvi_1888 0.22 -0.3
2,215,630 + Echvi_1888 0.23 -0.0
2,215,630 + Echvi_1888 0.23 -0.1
2,215,631 - Echvi_1888 0.23 -0.3
2,215,631 - Echvi_1888 0.23 +0.5
2,215,631 - Echvi_1888 0.23 -0.0
2,215,632 + Echvi_1888 0.23 +0.2
2,215,632 + Echvi_1888 0.23 +0.0
2,215,632 + Echvi_1888 0.23 -0.0
2,215,632 + Echvi_1888 0.23 +0.5
2,215,632 + Echvi_1888 0.23 -0.5
2,215,632 + Echvi_1888 0.23 +0.6
2,215,632 + Echvi_1888 0.23 +0.5
2,215,632 + Echvi_1888 0.23 -0.1
2,215,633 - Echvi_1888 0.23 -0.2
2,215,633 - Echvi_1888 0.23 +0.1
2,215,749 + Echvi_1888 0.28 +0.7
2,215,749 + Echvi_1888 0.28 -0.7
2,215,749 + Echvi_1888 0.28 -0.0
2,215,750 - Echvi_1888 0.28 +0.2
2,215,792 - Echvi_1888 0.30 +0.1
2,215,915 - Echvi_1888 0.36 +1.0
2,215,994 + Echvi_1888 0.40 +0.2

Or see this region's nucleotide sequence