Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0002

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0001 and Echvi_0002 are separated by 14 nucleotidesEchvi_0002 and Echvi_0003 are separated by 12 nucleotides Echvi_0001: Echvi_0001 - chromosomal replication initiator protein DnaA, at 290 to 1,717 _0001 Echvi_0002: Echvi_0002 - Protein of unknown function (DUF3298)., at 1,732 to 2,508 _0002 Echvi_0003: Echvi_0003 - LAO/AO transport system ATPase, at 2,521 to 3,525 _0003 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 1.712 kb on + strandat 1.713 kb on - strandat 1.723 kb on - strandat 1.765 kb on - strandat 1.818 kb on + strand, within Echvi_0002at 1.818 kb on + strand, within Echvi_0002at 1.818 kb on + strand, within Echvi_0002at 1.819 kb on - strand, within Echvi_0002at 1.821 kb on + strand, within Echvi_0002at 1.822 kb on - strand, within Echvi_0002at 1.824 kb on - strand, within Echvi_0002at 1.824 kb on - strand, within Echvi_0002at 2.091 kb on + strand, within Echvi_0002at 2.092 kb on - strand, within Echvi_0002at 2.268 kb on - strand, within Echvi_0002at 2.328 kb on + strand, within Echvi_0002at 2.329 kb on - strand, within Echvi_0002at 2.330 kb on + strand, within Echvi_0002at 2.330 kb on + strand, within Echvi_0002at 2.331 kb on - strand, within Echvi_0002at 2.342 kb on + strand, within Echvi_0002at 2.344 kb on + strand, within Echvi_0002at 2.344 kb on + strand, within Echvi_0002at 2.345 kb on - strand, within Echvi_0002at 2.345 kb on - strand, within Echvi_0002at 2.353 kb on + strand, within Echvi_0002at 2.367 kb on + strand, within Echvi_0002at 2.368 kb on - strand, within Echvi_0002at 2.370 kb on + strand, within Echvi_0002at 2.370 kb on + strand, within Echvi_0002at 2.405 kb on - strand, within Echvi_0002at 2.457 kb on + strandat 2.485 kb on + strandat 2.486 kb on - strandat 2.487 kb on + strandat 2.508 kb on + strandat 2.509 kb on - strandat 2.509 kb on - strandat 2.512 kb on + strandat 2.512 kb on + strandat 2.512 kb on + strandat 2.544 kb on + strandat 2.544 kb on + strandat 2.545 kb on - strandat 2.545 kb on - strandat 2.678 kb on + strand, within Echvi_0003at 2.767 kb on + strand, within Echvi_0003at 2.768 kb on - strand, within Echvi_0003at 3.134 kb on + strand, within Echvi_0003at 3.161 kb on + strand, within Echvi_0003at 3.161 kb on + strand, within Echvi_0003at 3.162 kb on - strand, within Echvi_0003at 3.232 kb on - strand, within Echvi_0003at 3.382 kb on + strand, within Echvi_0003at 3.383 kb on - strand, within Echvi_0003at 3.383 kb on - strand, within Echvi_0003

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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1,712 + +0.9
1,713 - +1.8
1,723 - -0.1
1,765 - +0.6
1,818 + Echvi_0002 0.11 +0.5
1,818 + Echvi_0002 0.11 -0.3
1,818 + Echvi_0002 0.11 -0.4
1,819 - Echvi_0002 0.11 +0.1
1,821 + Echvi_0002 0.11 +0.8
1,822 - Echvi_0002 0.12 +0.3
1,824 - Echvi_0002 0.12 -0.8
1,824 - Echvi_0002 0.12 +1.3
2,091 + Echvi_0002 0.46 +2.7
2,092 - Echvi_0002 0.46 +1.1
2,268 - Echvi_0002 0.69 -0.6
2,328 + Echvi_0002 0.77 +0.3
2,329 - Echvi_0002 0.77 -0.2
2,330 + Echvi_0002 0.77 -1.3
2,330 + Echvi_0002 0.77 +0.0
2,331 - Echvi_0002 0.77 -0.4
2,342 + Echvi_0002 0.79 +0.0
2,344 + Echvi_0002 0.79 +0.2
2,344 + Echvi_0002 0.79 +0.6
2,345 - Echvi_0002 0.79 -0.7
2,345 - Echvi_0002 0.79 +0.6
2,353 + Echvi_0002 0.80 -0.3
2,367 + Echvi_0002 0.82 -1.4
2,368 - Echvi_0002 0.82 -0.1
2,370 + Echvi_0002 0.82 -1.2
2,370 + Echvi_0002 0.82 +0.5
2,405 - Echvi_0002 0.87 -0.2
2,457 + +0.4
2,485 + +1.6
2,486 - -0.1
2,487 + -0.5
2,508 + +0.6
2,509 - +0.2
2,509 - +1.7
2,512 + -1.2
2,512 + +0.9
2,512 + +1.1
2,544 + +0.3
2,544 + +0.3
2,545 - -1.9
2,545 - +0.2
2,678 + Echvi_0003 0.16 -0.6
2,767 + Echvi_0003 0.24 +1.6
2,768 - Echvi_0003 0.25 -0.0
3,134 + Echvi_0003 0.61 +0.6
3,161 + Echvi_0003 0.64 +0.4
3,161 + Echvi_0003 0.64 -0.4
3,162 - Echvi_0003 0.64 +0.4
3,232 - Echvi_0003 0.71 +0.4
3,382 + Echvi_0003 0.86 -0.0
3,383 - Echvi_0003 0.86 +0.1
3,383 - Echvi_0003 0.86 +0.5

Or see this region's nucleotide sequence