Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2673

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2671 and EX28DRAFT_2672 are separated by 2 nucleotidesEX28DRAFT_2672 and EX28DRAFT_2673 are separated by 18 nucleotidesEX28DRAFT_2673 and EX28DRAFT_2674 are separated by 2 nucleotides EX28DRAFT_2671: EX28DRAFT_2671 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,709,829 to 2,710,704 _2671 EX28DRAFT_2672: EX28DRAFT_2672 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,710,707 to 2,711,648 _2672 EX28DRAFT_2673: EX28DRAFT_2673 - ABC-type dipeptide transport system, periplasmic component, at 2,711,667 to 2,713,181 _2673 EX28DRAFT_2674: EX28DRAFT_2674 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 2,713,184 to 2,714,266 _2674 Position (kb) 2711 2712 2713 2714Strain fitness (log2 ratio) -1 0 1at 2710.738 kb on + strandat 2710.994 kb on + strand, within EX28DRAFT_2672at 2711.014 kb on + strand, within EX28DRAFT_2672at 2711.014 kb on + strand, within EX28DRAFT_2672at 2711.015 kb on - strand, within EX28DRAFT_2672at 2711.328 kb on - strand, within EX28DRAFT_2672at 2711.455 kb on + strand, within EX28DRAFT_2672at 2711.668 kb on + strandat 2711.669 kb on - strandat 2711.669 kb on - strandat 2711.768 kb on - strandat 2711.773 kb on + strandat 2711.927 kb on + strand, within EX28DRAFT_2673at 2711.927 kb on + strand, within EX28DRAFT_2673at 2711.928 kb on - strand, within EX28DRAFT_2673at 2712.082 kb on - strand, within EX28DRAFT_2673at 2712.256 kb on + strand, within EX28DRAFT_2673at 2712.257 kb on - strand, within EX28DRAFT_2673at 2712.257 kb on - strand, within EX28DRAFT_2673at 2712.257 kb on - strand, within EX28DRAFT_2673at 2712.257 kb on - strand, within EX28DRAFT_2673at 2712.535 kb on + strand, within EX28DRAFT_2673at 2712.535 kb on + strand, within EX28DRAFT_2673at 2712.536 kb on - strand, within EX28DRAFT_2673at 2713.037 kb on - strandat 2713.037 kb on - strandat 2713.039 kb on + strandat 2713.039 kb on + strandat 2713.039 kb on + strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.040 kb on - strandat 2713.139 kb on + strandat 2713.140 kb on - strandat 2713.140 kb on - strandat 2713.140 kb on - strandat 2713.140 kb on - strandat 2713.170 kb on - strandat 2713.170 kb on - strandat 2713.170 kb on - strandat 2713.182 kb on + strandat 2713.182 kb on + strandat 2713.279 kb on + strandat 2713.518 kb on + strand, within EX28DRAFT_2674at 2713.519 kb on - strand, within EX28DRAFT_2674at 2713.581 kb on + strand, within EX28DRAFT_2674at 2713.581 kb on + strand, within EX28DRAFT_2674at 2713.581 kb on + strand, within EX28DRAFT_2674at 2713.581 kb on + strand, within EX28DRAFT_2674at 2714.102 kb on - strand, within EX28DRAFT_2674at 2714.102 kb on - strand, within EX28DRAFT_2674

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,710,738 + +0.3
2,710,994 + EX28DRAFT_2672 0.30 -0.0
2,711,014 + EX28DRAFT_2672 0.33 +0.2
2,711,014 + EX28DRAFT_2672 0.33 -0.2
2,711,015 - EX28DRAFT_2672 0.33 -1.2
2,711,328 - EX28DRAFT_2672 0.66 +0.6
2,711,455 + EX28DRAFT_2672 0.79 -0.1
2,711,668 + -0.3
2,711,669 - -0.4
2,711,669 - +0.4
2,711,768 - -0.5
2,711,773 + +0.1
2,711,927 + EX28DRAFT_2673 0.17 -0.7
2,711,927 + EX28DRAFT_2673 0.17 +0.5
2,711,928 - EX28DRAFT_2673 0.17 -0.8
2,712,082 - EX28DRAFT_2673 0.27 +0.0
2,712,256 + EX28DRAFT_2673 0.39 +0.1
2,712,257 - EX28DRAFT_2673 0.39 +0.1
2,712,257 - EX28DRAFT_2673 0.39 -0.2
2,712,257 - EX28DRAFT_2673 0.39 -0.7
2,712,257 - EX28DRAFT_2673 0.39 +0.2
2,712,535 + EX28DRAFT_2673 0.57 -0.3
2,712,535 + EX28DRAFT_2673 0.57 -0.1
2,712,536 - EX28DRAFT_2673 0.57 -0.3
2,713,037 - +0.0
2,713,037 - +0.1
2,713,039 + +0.5
2,713,039 + -0.0
2,713,039 + +0.3
2,713,040 - +0.7
2,713,040 - -0.1
2,713,040 - +0.1
2,713,040 - -0.5
2,713,040 - -0.8
2,713,040 - +0.1
2,713,040 - +0.2
2,713,040 - -0.1
2,713,040 - +0.2
2,713,040 - +0.2
2,713,139 + -0.3
2,713,140 - +0.0
2,713,140 - +0.0
2,713,140 - -1.7
2,713,140 - +0.4
2,713,170 - -0.2
2,713,170 - +0.8
2,713,170 - -1.3
2,713,182 + -0.3
2,713,182 + -0.2
2,713,279 + -0.0
2,713,518 + EX28DRAFT_2674 0.31 +0.5
2,713,519 - EX28DRAFT_2674 0.31 +1.1
2,713,581 + EX28DRAFT_2674 0.37 -0.5
2,713,581 + EX28DRAFT_2674 0.37 -0.0
2,713,581 + EX28DRAFT_2674 0.37 +0.3
2,713,581 + EX28DRAFT_2674 0.37 +0.2
2,714,102 - EX28DRAFT_2674 0.85 +1.3
2,714,102 - EX28DRAFT_2674 0.85 -0.0

Or see this region's nucleotide sequence