Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2652 and EX28DRAFT_2653 are separated by 109 nucleotides EX28DRAFT_2653 and EX28DRAFT_2654 are separated by 57 nucleotides EX28DRAFT_2654 and EX28DRAFT_2655 are separated by 106 nucleotides EX28DRAFT_2655 and EX28DRAFT_2656 are separated by 260 nucleotides
EX28DRAFT_2652: EX28DRAFT_2652 - Outer membrane protein (porin), at 2,689,767 to 2,690,819
_2652
EX28DRAFT_2653: EX28DRAFT_2653 - Transcriptional regulator Crl, at 2,690,929 to 2,691,330
_2653
EX28DRAFT_2654: EX28DRAFT_2654 - Alpha/beta hydrolase of unknown function (DUF1100), at 2,691,388 to 2,692,632
_2654
EX28DRAFT_2655: EX28DRAFT_2655 - Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins, at 2,692,739 to 2,693,197
_2655
EX28DRAFT_2656: EX28DRAFT_2656 - Xaa-His dipeptidase, at 2,693,458 to 2,694,915
_2656
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-2
-1
0
1 at 2690.473 kb on - strand, within EX28DRAFT_2652 at 2690.490 kb on + strand, within EX28DRAFT_2652 at 2690.505 kb on + strand, within EX28DRAFT_2652 at 2690.523 kb on - strand, within EX28DRAFT_2652 at 2690.583 kb on + strand, within EX28DRAFT_2652 at 2690.676 kb on + strand, within EX28DRAFT_2652 at 2690.676 kb on - strand, within EX28DRAFT_2652 at 2690.802 kb on - strand at 2690.808 kb on + strand at 2690.809 kb on - strand at 2690.869 kb on + strand at 2690.870 kb on - strand at 2690.870 kb on - strand at 2690.927 kb on + strand at 2691.036 kb on + strand, within EX28DRAFT_2653 at 2691.037 kb on - strand, within EX28DRAFT_2653 at 2691.037 kb on - strand, within EX28DRAFT_2653 at 2691.037 kb on - strand, within EX28DRAFT_2653 at 2691.037 kb on - strand, within EX28DRAFT_2653 at 2691.038 kb on + strand, within EX28DRAFT_2653 at 2691.039 kb on - strand, within EX28DRAFT_2653 at 2691.120 kb on - strand, within EX28DRAFT_2653 at 2691.123 kb on + strand, within EX28DRAFT_2653 at 2691.123 kb on + strand, within EX28DRAFT_2653 at 2691.124 kb on - strand, within EX28DRAFT_2653 at 2691.125 kb on + strand, within EX28DRAFT_2653 at 2691.265 kb on - strand, within EX28DRAFT_2653 at 2691.300 kb on + strand at 2691.386 kb on + strand at 2691.387 kb on - strand at 2691.608 kb on + strand, within EX28DRAFT_2654 at 2691.684 kb on - strand, within EX28DRAFT_2654 at 2691.684 kb on - strand, within EX28DRAFT_2654 at 2691.694 kb on + strand, within EX28DRAFT_2654 at 2691.695 kb on - strand, within EX28DRAFT_2654 at 2691.780 kb on + strand, within EX28DRAFT_2654 at 2691.781 kb on - strand, within EX28DRAFT_2654 at 2691.782 kb on + strand, within EX28DRAFT_2654 at 2691.783 kb on - strand, within EX28DRAFT_2654 at 2691.993 kb on - strand, within EX28DRAFT_2654 at 2692.002 kb on - strand, within EX28DRAFT_2654 at 2692.004 kb on + strand, within EX28DRAFT_2654 at 2692.074 kb on + strand, within EX28DRAFT_2654 at 2692.658 kb on - strand at 2692.666 kb on + strand at 2692.666 kb on + strand at 2692.666 kb on + strand at 2692.686 kb on + strand at 2693.011 kb on - strand, within EX28DRAFT_2655 at 2693.011 kb on - strand, within EX28DRAFT_2655 at 2693.011 kb on - strand, within EX28DRAFT_2655 at 2693.011 kb on - strand, within EX28DRAFT_2655 at 2693.101 kb on + strand, within EX28DRAFT_2655 at 2693.185 kb on - strand at 2693.220 kb on + strand at 2693.252 kb on - strand at 2693.329 kb on + strand at 2693.329 kb on + strand at 2693.330 kb on - strand at 2693.330 kb on - strand at 2693.330 kb on - strand at 2693.356 kb on + strand at 2693.395 kb on + strand at 2693.396 kb on - strand at 2693.396 kb on - strand at 2693.454 kb on + strand at 2693.455 kb on - strand at 2693.455 kb on - strand at 2693.562 kb on + strand at 2693.562 kb on + strand at 2693.563 kb on - strand at 2693.563 kb on - strand at 2693.565 kb on + strand at 2693.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,690,473 - EX28DRAFT_2652 0.67 +0.1 2,690,490 + EX28DRAFT_2652 0.69 -0.0 2,690,505 + EX28DRAFT_2652 0.70 +0.2 2,690,523 - EX28DRAFT_2652 0.72 +0.1 2,690,583 + EX28DRAFT_2652 0.77 -0.6 2,690,676 + EX28DRAFT_2652 0.86 -0.4 2,690,676 - EX28DRAFT_2652 0.86 +0.7 2,690,802 - +0.0 2,690,808 + +0.5 2,690,809 - -1.2 2,690,869 + -0.0 2,690,870 - +0.3 2,690,870 - -0.9 2,690,927 + +0.4 2,691,036 + EX28DRAFT_2653 0.27 +0.1 2,691,037 - EX28DRAFT_2653 0.27 +0.0 2,691,037 - EX28DRAFT_2653 0.27 +0.6 2,691,037 - EX28DRAFT_2653 0.27 +0.0 2,691,037 - EX28DRAFT_2653 0.27 +0.8 2,691,038 + EX28DRAFT_2653 0.27 +0.1 2,691,039 - EX28DRAFT_2653 0.27 -0.2 2,691,120 - EX28DRAFT_2653 0.48 +1.0 2,691,123 + EX28DRAFT_2653 0.48 -0.1 2,691,123 + EX28DRAFT_2653 0.48 +0.5 2,691,124 - EX28DRAFT_2653 0.49 -0.1 2,691,125 + EX28DRAFT_2653 0.49 +0.9 2,691,265 - EX28DRAFT_2653 0.84 -0.3 2,691,300 + -0.1 2,691,386 + +0.2 2,691,387 - -0.0 2,691,608 + EX28DRAFT_2654 0.18 -0.0 2,691,684 - EX28DRAFT_2654 0.24 -0.1 2,691,684 - EX28DRAFT_2654 0.24 -0.5 2,691,694 + EX28DRAFT_2654 0.25 -0.2 2,691,695 - EX28DRAFT_2654 0.25 +0.5 2,691,780 + EX28DRAFT_2654 0.31 +0.1 2,691,781 - EX28DRAFT_2654 0.32 -0.1 2,691,782 + EX28DRAFT_2654 0.32 -1.2 2,691,783 - EX28DRAFT_2654 0.32 +0.1 2,691,993 - EX28DRAFT_2654 0.49 -0.0 2,692,002 - EX28DRAFT_2654 0.49 +0.3 2,692,004 + EX28DRAFT_2654 0.49 +0.1 2,692,074 + EX28DRAFT_2654 0.55 -1.8 2,692,658 - -0.2 2,692,666 + +0.5 2,692,666 + -0.2 2,692,666 + +0.3 2,692,686 + +0.0 2,693,011 - EX28DRAFT_2655 0.59 +0.8 2,693,011 - EX28DRAFT_2655 0.59 +0.3 2,693,011 - EX28DRAFT_2655 0.59 +0.3 2,693,011 - EX28DRAFT_2655 0.59 +0.5 2,693,101 + EX28DRAFT_2655 0.79 +0.3 2,693,185 - +0.1 2,693,220 + +0.2 2,693,252 - -0.9 2,693,329 + +0.2 2,693,329 + +0.3 2,693,330 - -0.0 2,693,330 - -0.0 2,693,330 - -0.1 2,693,356 + -0.3 2,693,395 + -0.1 2,693,396 - -0.1 2,693,396 - -1.3 2,693,454 + +0.3 2,693,455 - -0.5 2,693,455 - -0.4 2,693,562 + +0.5 2,693,562 + -1.8 2,693,563 - -0.1 2,693,563 - -0.1 2,693,565 + -0.1 2,693,566 - +0.1
Or see this region's nucleotide sequence