Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2628 and EX28DRAFT_2629 are separated by 3 nucleotides EX28DRAFT_2629 and EX28DRAFT_2630 overlap by 8 nucleotides EX28DRAFT_2630 and EX28DRAFT_2631 are separated by 14 nucleotides
EX28DRAFT_2628: EX28DRAFT_2628 - Aspartate/tyrosine/aromatic aminotransferase, at 2,667,154 to 2,668,305
_2628
EX28DRAFT_2629: EX28DRAFT_2629 - nucleoside diphosphate kinase (EC 2.7.4.6), at 2,668,309 to 2,669,370
_2629
EX28DRAFT_2630: EX28DRAFT_2630 - hypothetical protein, at 2,669,363 to 2,670,073
_2630
EX28DRAFT_2631: EX28DRAFT_2631 - Protein of unknown function (DUF2817), at 2,670,088 to 2,671,146
_2631
Position (kb)
2668
2669
2670 Strain fitness (log2 ratio)
-1
0
1 at 2667.309 kb on - strand, within EX28DRAFT_2628 at 2667.343 kb on - strand, within EX28DRAFT_2628 at 2667.391 kb on + strand, within EX28DRAFT_2628 at 2667.391 kb on + strand, within EX28DRAFT_2628 at 2667.392 kb on - strand, within EX28DRAFT_2628 at 2667.432 kb on + strand, within EX28DRAFT_2628 at 2667.548 kb on + strand, within EX28DRAFT_2628 at 2667.554 kb on + strand, within EX28DRAFT_2628 at 2667.554 kb on + strand, within EX28DRAFT_2628 at 2667.598 kb on + strand, within EX28DRAFT_2628 at 2667.598 kb on + strand, within EX28DRAFT_2628 at 2667.688 kb on + strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.721 kb on + strand, within EX28DRAFT_2628 at 2667.722 kb on - strand, within EX28DRAFT_2628 at 2667.738 kb on + strand, within EX28DRAFT_2628 at 2667.808 kb on + strand, within EX28DRAFT_2628 at 2667.834 kb on + strand, within EX28DRAFT_2628 at 2667.848 kb on - strand, within EX28DRAFT_2628 at 2667.982 kb on - strand, within EX28DRAFT_2628 at 2668.106 kb on - strand, within EX28DRAFT_2628 at 2668.158 kb on - strand, within EX28DRAFT_2628 at 2668.207 kb on + strand at 2668.794 kb on - strand, within EX28DRAFT_2629 at 2668.798 kb on - strand, within EX28DRAFT_2629 at 2669.270 kb on + strand at 2669.314 kb on - strand at 2669.377 kb on + strand at 2669.553 kb on + strand, within EX28DRAFT_2630 at 2669.611 kb on + strand, within EX28DRAFT_2630 at 2669.611 kb on + strand, within EX28DRAFT_2630 at 2669.730 kb on - strand, within EX28DRAFT_2630 at 2670.011 kb on - strand at 2670.030 kb on - strand at 2670.084 kb on + strand at 2670.085 kb on - strand at 2670.085 kb on - strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.098 kb on - strand at 2670.098 kb on - strand at 2670.121 kb on - strand at 2670.153 kb on - strand at 2670.200 kb on + strand, within EX28DRAFT_2631 at 2670.205 kb on + strand, within EX28DRAFT_2631 at 2670.206 kb on - strand, within EX28DRAFT_2631 at 2670.208 kb on - strand, within EX28DRAFT_2631 at 2670.208 kb on - strand, within EX28DRAFT_2631 at 2670.279 kb on - strand, within EX28DRAFT_2631 at 2670.334 kb on - strand, within EX28DRAFT_2631
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,667,309 - EX28DRAFT_2628 0.13 -0.5 2,667,343 - EX28DRAFT_2628 0.16 -0.2 2,667,391 + EX28DRAFT_2628 0.21 +0.3 2,667,391 + EX28DRAFT_2628 0.21 -0.6 2,667,392 - EX28DRAFT_2628 0.21 +0.3 2,667,432 + EX28DRAFT_2628 0.24 +0.7 2,667,548 + EX28DRAFT_2628 0.34 -0.7 2,667,554 + EX28DRAFT_2628 0.35 +0.5 2,667,554 + EX28DRAFT_2628 0.35 -0.1 2,667,598 + EX28DRAFT_2628 0.39 +0.3 2,667,598 + EX28DRAFT_2628 0.39 +0.5 2,667,688 + EX28DRAFT_2628 0.46 -0.4 2,667,689 - EX28DRAFT_2628 0.46 -0.4 2,667,689 - EX28DRAFT_2628 0.46 +0.1 2,667,689 - EX28DRAFT_2628 0.46 -1.6 2,667,689 - EX28DRAFT_2628 0.46 +0.1 2,667,689 - EX28DRAFT_2628 0.46 -0.3 2,667,721 + EX28DRAFT_2628 0.49 -0.4 2,667,722 - EX28DRAFT_2628 0.49 +0.2 2,667,738 + EX28DRAFT_2628 0.51 -0.2 2,667,808 + EX28DRAFT_2628 0.57 +0.0 2,667,834 + EX28DRAFT_2628 0.59 -0.5 2,667,848 - EX28DRAFT_2628 0.60 +0.6 2,667,982 - EX28DRAFT_2628 0.72 +0.2 2,668,106 - EX28DRAFT_2628 0.83 +0.1 2,668,158 - EX28DRAFT_2628 0.87 +0.8 2,668,207 + -0.2 2,668,794 - EX28DRAFT_2629 0.46 +0.3 2,668,798 - EX28DRAFT_2629 0.46 +0.1 2,669,270 + -1.1 2,669,314 - +0.1 2,669,377 + +0.0 2,669,553 + EX28DRAFT_2630 0.27 -0.2 2,669,611 + EX28DRAFT_2630 0.35 +0.3 2,669,611 + EX28DRAFT_2630 0.35 +0.4 2,669,730 - EX28DRAFT_2630 0.52 +0.1 2,670,011 - -0.6 2,670,030 - +0.2 2,670,084 + -0.3 2,670,085 - -1.2 2,670,085 - -0.2 2,670,097 + -0.6 2,670,097 + -0.1 2,670,097 + +0.5 2,670,097 + -0.1 2,670,098 - +0.1 2,670,098 - +0.1 2,670,121 - -0.4 2,670,153 - -1.1 2,670,200 + EX28DRAFT_2631 0.11 -0.4 2,670,205 + EX28DRAFT_2631 0.11 +0.6 2,670,206 - EX28DRAFT_2631 0.11 +0.6 2,670,208 - EX28DRAFT_2631 0.11 +1.3 2,670,208 - EX28DRAFT_2631 0.11 -0.2 2,670,279 - EX28DRAFT_2631 0.18 +0.0 2,670,334 - EX28DRAFT_2631 0.23 -0.1
Or see this region's nucleotide sequence