Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2628

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2626 and EX28DRAFT_2627 are separated by 17 nucleotidesEX28DRAFT_2627 and EX28DRAFT_2628 overlap by 4 nucleotidesEX28DRAFT_2628 and EX28DRAFT_2629 are separated by 3 nucleotides EX28DRAFT_2626: EX28DRAFT_2626 - hypothetical protein, at 2,665,392 to 2,666,168 _2626 EX28DRAFT_2627: EX28DRAFT_2627 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,666,186 to 2,667,157 _2627 EX28DRAFT_2628: EX28DRAFT_2628 - Aspartate/tyrosine/aromatic aminotransferase, at 2,667,154 to 2,668,305 _2628 EX28DRAFT_2629: EX28DRAFT_2629 - nucleoside diphosphate kinase (EC 2.7.4.6), at 2,668,309 to 2,669,370 _2629 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -1 0 1at 2666.260 kb on + strandat 2666.839 kb on + strand, within EX28DRAFT_2627at 2666.859 kb on + strand, within EX28DRAFT_2627at 2666.866 kb on + strand, within EX28DRAFT_2627at 2666.953 kb on - strand, within EX28DRAFT_2627at 2667.100 kb on + strandat 2667.100 kb on + strandat 2667.101 kb on - strandat 2667.101 kb on - strandat 2667.121 kb on + strandat 2667.135 kb on + strandat 2667.135 kb on + strandat 2667.139 kb on - strandat 2667.180 kb on + strandat 2667.248 kb on + strandat 2667.249 kb on - strandat 2667.276 kb on + strand, within EX28DRAFT_2628at 2667.276 kb on + strand, within EX28DRAFT_2628at 2667.276 kb on + strand, within EX28DRAFT_2628at 2667.277 kb on - strand, within EX28DRAFT_2628at 2667.309 kb on - strand, within EX28DRAFT_2628at 2667.343 kb on - strand, within EX28DRAFT_2628at 2667.391 kb on + strand, within EX28DRAFT_2628at 2667.391 kb on + strand, within EX28DRAFT_2628at 2667.392 kb on - strand, within EX28DRAFT_2628at 2667.432 kb on + strand, within EX28DRAFT_2628at 2667.548 kb on + strand, within EX28DRAFT_2628at 2667.554 kb on + strand, within EX28DRAFT_2628at 2667.554 kb on + strand, within EX28DRAFT_2628at 2667.598 kb on + strand, within EX28DRAFT_2628at 2667.598 kb on + strand, within EX28DRAFT_2628at 2667.688 kb on + strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.721 kb on + strand, within EX28DRAFT_2628at 2667.722 kb on - strand, within EX28DRAFT_2628at 2667.738 kb on + strand, within EX28DRAFT_2628at 2667.808 kb on + strand, within EX28DRAFT_2628at 2667.834 kb on + strand, within EX28DRAFT_2628at 2667.848 kb on - strand, within EX28DRAFT_2628at 2667.982 kb on - strand, within EX28DRAFT_2628at 2668.106 kb on - strand, within EX28DRAFT_2628at 2668.158 kb on - strand, within EX28DRAFT_2628at 2668.207 kb on + strandat 2668.794 kb on - strand, within EX28DRAFT_2629at 2668.798 kb on - strand, within EX28DRAFT_2629at 2669.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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2,666,260 + -0.6
2,666,839 + EX28DRAFT_2627 0.67 -0.2
2,666,859 + EX28DRAFT_2627 0.69 -0.1
2,666,866 + EX28DRAFT_2627 0.70 -0.4
2,666,953 - EX28DRAFT_2627 0.79 -0.1
2,667,100 + -0.8
2,667,100 + +0.1
2,667,101 - -0.2
2,667,101 - -0.1
2,667,121 + +0.9
2,667,135 + +0.0
2,667,135 + +0.6
2,667,139 - +0.4
2,667,180 + -0.2
2,667,248 + -0.9
2,667,249 - -0.1
2,667,276 + EX28DRAFT_2628 0.11 +0.1
2,667,276 + EX28DRAFT_2628 0.11 +0.0
2,667,276 + EX28DRAFT_2628 0.11 +0.0
2,667,277 - EX28DRAFT_2628 0.11 -0.7
2,667,309 - EX28DRAFT_2628 0.13 -0.5
2,667,343 - EX28DRAFT_2628 0.16 -0.2
2,667,391 + EX28DRAFT_2628 0.21 +0.3
2,667,391 + EX28DRAFT_2628 0.21 -0.6
2,667,392 - EX28DRAFT_2628 0.21 +0.3
2,667,432 + EX28DRAFT_2628 0.24 +0.7
2,667,548 + EX28DRAFT_2628 0.34 -0.7
2,667,554 + EX28DRAFT_2628 0.35 +0.5
2,667,554 + EX28DRAFT_2628 0.35 -0.1
2,667,598 + EX28DRAFT_2628 0.39 +0.3
2,667,598 + EX28DRAFT_2628 0.39 +0.5
2,667,688 + EX28DRAFT_2628 0.46 -0.4
2,667,689 - EX28DRAFT_2628 0.46 -0.4
2,667,689 - EX28DRAFT_2628 0.46 +0.1
2,667,689 - EX28DRAFT_2628 0.46 -1.6
2,667,689 - EX28DRAFT_2628 0.46 +0.1
2,667,689 - EX28DRAFT_2628 0.46 -0.3
2,667,721 + EX28DRAFT_2628 0.49 -0.4
2,667,722 - EX28DRAFT_2628 0.49 +0.2
2,667,738 + EX28DRAFT_2628 0.51 -0.2
2,667,808 + EX28DRAFT_2628 0.57 +0.0
2,667,834 + EX28DRAFT_2628 0.59 -0.5
2,667,848 - EX28DRAFT_2628 0.60 +0.6
2,667,982 - EX28DRAFT_2628 0.72 +0.2
2,668,106 - EX28DRAFT_2628 0.83 +0.1
2,668,158 - EX28DRAFT_2628 0.87 +0.8
2,668,207 + -0.2
2,668,794 - EX28DRAFT_2629 0.46 +0.3
2,668,798 - EX28DRAFT_2629 0.46 +0.1
2,669,270 + -1.1

Or see this region's nucleotide sequence