Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2078 and EX28DRAFT_2079 are separated by 12 nucleotides EX28DRAFT_2079 and EX28DRAFT_2080 are separated by 13 nucleotides
EX28DRAFT_2078: EX28DRAFT_2078 - type II secretion system protein E, at 2,102,474 to 2,103,952
_2078
EX28DRAFT_2079: EX28DRAFT_2079 - type II secretion system protein D, at 2,103,965 to 2,105,890
_2079
EX28DRAFT_2080: EX28DRAFT_2080 - type II secretion system protein C, at 2,105,904 to 2,106,676
_2080
Position (kb)
2103
2104
2105
2106 Strain fitness (log2 ratio)
-2
-1
0
1 at 2103.109 kb on - strand, within EX28DRAFT_2078 at 2103.184 kb on + strand, within EX28DRAFT_2078 at 2103.185 kb on - strand, within EX28DRAFT_2078 at 2103.185 kb on - strand, within EX28DRAFT_2078 at 2103.301 kb on + strand, within EX28DRAFT_2078 at 2103.302 kb on - strand, within EX28DRAFT_2078 at 2103.346 kb on - strand, within EX28DRAFT_2078 at 2103.407 kb on - strand, within EX28DRAFT_2078 at 2103.810 kb on + strand at 2103.810 kb on + strand at 2103.811 kb on - strand at 2103.849 kb on + strand at 2103.873 kb on + strand at 2103.873 kb on + strand at 2103.873 kb on + strand at 2103.873 kb on + strand at 2103.873 kb on + strand at 2103.874 kb on - strand at 2103.874 kb on - strand at 2103.874 kb on - strand at 2103.874 kb on - strand at 2103.888 kb on + strand at 2103.938 kb on - strand at 2104.070 kb on + strand at 2104.070 kb on + strand at 2104.128 kb on + strand at 2104.128 kb on + strand at 2104.129 kb on - strand at 2104.129 kb on - strand at 2104.153 kb on - strand at 2104.225 kb on + strand, within EX28DRAFT_2079 at 2104.226 kb on - strand, within EX28DRAFT_2079 at 2104.226 kb on - strand, within EX28DRAFT_2079 at 2104.504 kb on + strand, within EX28DRAFT_2079 at 2104.504 kb on + strand, within EX28DRAFT_2079 at 2104.713 kb on + strand, within EX28DRAFT_2079 at 2104.714 kb on - strand, within EX28DRAFT_2079 at 2104.860 kb on - strand, within EX28DRAFT_2079 at 2105.076 kb on + strand, within EX28DRAFT_2079 at 2105.640 kb on + strand, within EX28DRAFT_2079 at 2105.640 kb on + strand, within EX28DRAFT_2079 at 2105.673 kb on + strand, within EX28DRAFT_2079 at 2105.691 kb on - strand, within EX28DRAFT_2079 at 2105.697 kb on + strand, within EX28DRAFT_2079 at 2105.698 kb on - strand at 2105.698 kb on - strand at 2105.750 kb on - strand at 2105.753 kb on - strand at 2105.843 kb on + strand at 2105.896 kb on + strand at 2105.903 kb on - strand at 2106.051 kb on + strand, within EX28DRAFT_2080 at 2106.107 kb on + strand, within EX28DRAFT_2080 at 2106.142 kb on - strand, within EX28DRAFT_2080 at 2106.183 kb on + strand, within EX28DRAFT_2080 at 2106.428 kb on + strand, within EX28DRAFT_2080 at 2106.744 kb on - strand at 2106.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 2,103,109 - EX28DRAFT_2078 0.43 -0.9 2,103,184 + EX28DRAFT_2078 0.48 +0.2 2,103,185 - EX28DRAFT_2078 0.48 +0.3 2,103,185 - EX28DRAFT_2078 0.48 -1.2 2,103,301 + EX28DRAFT_2078 0.56 +0.0 2,103,302 - EX28DRAFT_2078 0.56 +0.0 2,103,346 - EX28DRAFT_2078 0.59 -0.2 2,103,407 - EX28DRAFT_2078 0.63 +0.5 2,103,810 + +1.5 2,103,810 + +0.4 2,103,811 - -0.2 2,103,849 + +0.3 2,103,873 + -0.2 2,103,873 + +0.2 2,103,873 + -0.0 2,103,873 + +0.1 2,103,873 + -0.2 2,103,874 - -0.1 2,103,874 - -0.2 2,103,874 - +0.2 2,103,874 - -0.1 2,103,888 + -0.1 2,103,938 - +0.2 2,104,070 + -0.6 2,104,070 + -0.5 2,104,128 + +0.3 2,104,128 + -1.5 2,104,129 - -0.0 2,104,129 - -0.1 2,104,153 - +0.4 2,104,225 + EX28DRAFT_2079 0.13 +0.8 2,104,226 - EX28DRAFT_2079 0.14 -0.0 2,104,226 - EX28DRAFT_2079 0.14 +0.9 2,104,504 + EX28DRAFT_2079 0.28 +0.0 2,104,504 + EX28DRAFT_2079 0.28 +0.3 2,104,713 + EX28DRAFT_2079 0.39 +0.3 2,104,714 - EX28DRAFT_2079 0.39 -0.1 2,104,860 - EX28DRAFT_2079 0.46 -1.9 2,105,076 + EX28DRAFT_2079 0.58 +0.4 2,105,640 + EX28DRAFT_2079 0.87 -0.4 2,105,640 + EX28DRAFT_2079 0.87 -0.3 2,105,673 + EX28DRAFT_2079 0.89 +1.3 2,105,691 - EX28DRAFT_2079 0.90 -0.1 2,105,697 + EX28DRAFT_2079 0.90 -0.1 2,105,698 - +0.4 2,105,698 - +0.2 2,105,750 - +0.5 2,105,753 - -0.0 2,105,843 + +0.4 2,105,896 + +0.0 2,105,903 - -0.5 2,106,051 + EX28DRAFT_2080 0.19 -0.8 2,106,107 + EX28DRAFT_2080 0.26 +0.2 2,106,142 - EX28DRAFT_2080 0.31 -0.8 2,106,183 + EX28DRAFT_2080 0.36 +1.0 2,106,428 + EX28DRAFT_2080 0.68 -0.0 2,106,744 - -0.4 2,106,881 - +0.3
Or see this region's nucleotide sequence