Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1707

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1706 and EX28DRAFT_1707 are separated by 19 nucleotidesEX28DRAFT_1707 and EX28DRAFT_1708 are separated by 140 nucleotidesEX28DRAFT_1708 and EX28DRAFT_1709 are separated by 2 nucleotides EX28DRAFT_1706: EX28DRAFT_1706 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 1,722,540 to 1,723,586 _1706 EX28DRAFT_1707: EX28DRAFT_1707 - Transcriptional regulator, at 1,723,606 to 1,724,508 _1707 EX28DRAFT_1708: EX28DRAFT_1708 - 3-oxoacid CoA-transferase, A subunit, at 1,724,649 to 1,725,356 _1708 EX28DRAFT_1709: EX28DRAFT_1709 - 3-oxoacid CoA-transferase, B subunit, at 1,725,359 to 1,726,015 _1709 Position (kb) 1723 1724 1725Strain fitness (log2 ratio) -1 0 1at 1722.751 kb on - strand, within EX28DRAFT_1706at 1722.817 kb on - strand, within EX28DRAFT_1706at 1722.928 kb on + strand, within EX28DRAFT_1706at 1722.929 kb on - strand, within EX28DRAFT_1706at 1723.197 kb on + strand, within EX28DRAFT_1706at 1723.198 kb on - strand, within EX28DRAFT_1706at 1723.232 kb on + strand, within EX28DRAFT_1706at 1723.233 kb on - strand, within EX28DRAFT_1706at 1723.257 kb on + strand, within EX28DRAFT_1706at 1723.257 kb on + strand, within EX28DRAFT_1706at 1723.271 kb on + strand, within EX28DRAFT_1706at 1723.571 kb on - strandat 1723.669 kb on - strandat 1723.680 kb on + strandat 1723.680 kb on + strandat 1723.680 kb on + strandat 1723.680 kb on + strandat 1723.681 kb on - strandat 1723.738 kb on - strand, within EX28DRAFT_1707at 1724.173 kb on + strand, within EX28DRAFT_1707at 1724.173 kb on + strand, within EX28DRAFT_1707at 1724.173 kb on + strand, within EX28DRAFT_1707at 1724.244 kb on + strand, within EX28DRAFT_1707at 1724.467 kb on + strandat 1724.663 kb on + strandat 1724.948 kb on + strand, within EX28DRAFT_1708at 1724.948 kb on + strand, within EX28DRAFT_1708at 1725.078 kb on + strand, within EX28DRAFT_1708at 1725.078 kb on + strand, within EX28DRAFT_1708at 1725.079 kb on - strand, within EX28DRAFT_1708at 1725.269 kb on + strand, within EX28DRAFT_1708at 1725.283 kb on - strand, within EX28DRAFT_1708at 1725.363 kb on + strandat 1725.414 kb on - strandat 1725.416 kb on + strandat 1725.459 kb on - strand, within EX28DRAFT_1709

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
1,722,751 - EX28DRAFT_1706 0.20 +0.3
1,722,817 - EX28DRAFT_1706 0.26 -0.0
1,722,928 + EX28DRAFT_1706 0.37 +0.1
1,722,929 - EX28DRAFT_1706 0.37 +0.9
1,723,197 + EX28DRAFT_1706 0.63 -0.4
1,723,198 - EX28DRAFT_1706 0.63 +1.0
1,723,232 + EX28DRAFT_1706 0.66 -0.1
1,723,233 - EX28DRAFT_1706 0.66 +0.5
1,723,257 + EX28DRAFT_1706 0.68 -0.9
1,723,257 + EX28DRAFT_1706 0.68 +0.2
1,723,271 + EX28DRAFT_1706 0.70 +0.7
1,723,571 - +0.2
1,723,669 - +0.3
1,723,680 + -0.4
1,723,680 + -0.0
1,723,680 + -0.4
1,723,680 + +0.3
1,723,681 - +0.5
1,723,738 - EX28DRAFT_1707 0.15 -0.9
1,724,173 + EX28DRAFT_1707 0.63 -0.0
1,724,173 + EX28DRAFT_1707 0.63 -0.0
1,724,173 + EX28DRAFT_1707 0.63 -0.1
1,724,244 + EX28DRAFT_1707 0.71 -0.1
1,724,467 + -0.9
1,724,663 + -0.0
1,724,948 + EX28DRAFT_1708 0.42 +1.7
1,724,948 + EX28DRAFT_1708 0.42 +0.3
1,725,078 + EX28DRAFT_1708 0.61 -0.2
1,725,078 + EX28DRAFT_1708 0.61 -0.0
1,725,079 - EX28DRAFT_1708 0.61 -0.2
1,725,269 + EX28DRAFT_1708 0.88 -0.2
1,725,283 - EX28DRAFT_1708 0.90 +0.2
1,725,363 + +0.3
1,725,414 - +0.9
1,725,416 + +0.2
1,725,459 - EX28DRAFT_1709 0.15 +1.4

Or see this region's nucleotide sequence