Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1657

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1656 and EX28DRAFT_1657 are separated by 114 nucleotidesEX28DRAFT_1657 and EX28DRAFT_1658 are separated by 297 nucleotides EX28DRAFT_1656: EX28DRAFT_1656 - Transcriptional regulator, at 1,672,167 to 1,673,078 _1656 EX28DRAFT_1657: EX28DRAFT_1657 - drug resistance transporter, Bcr/CflA subfamily, at 1,673,193 to 1,674,392 _1657 EX28DRAFT_1658: EX28DRAFT_1658 - Cyclopropane fatty acid synthase and related methyltransferases, at 1,674,690 to 1,675,838 _1658 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -3 -2 -1 0 1at 1672.479 kb on - strand, within EX28DRAFT_1656at 1672.634 kb on + strand, within EX28DRAFT_1656at 1673.052 kb on + strandat 1673.147 kb on + strandat 1673.148 kb on - strandat 1673.164 kb on + strandat 1673.165 kb on - strandat 1673.166 kb on + strandat 1673.167 kb on - strandat 1673.167 kb on - strandat 1673.167 kb on - strandat 1673.191 kb on + strandat 1673.192 kb on - strandat 1673.215 kb on + strandat 1673.262 kb on - strandat 1673.262 kb on - strandat 1673.265 kb on + strandat 1673.265 kb on + strandat 1673.265 kb on + strandat 1673.266 kb on - strandat 1673.266 kb on - strandat 1673.266 kb on - strandat 1673.300 kb on - strandat 1673.300 kb on - strandat 1673.597 kb on + strand, within EX28DRAFT_1657at 1673.707 kb on + strand, within EX28DRAFT_1657at 1673.829 kb on + strand, within EX28DRAFT_1657at 1673.830 kb on - strand, within EX28DRAFT_1657at 1673.926 kb on - strand, within EX28DRAFT_1657at 1674.028 kb on - strand, within EX28DRAFT_1657at 1674.469 kb on + strandat 1674.469 kb on + strandat 1674.469 kb on + strandat 1674.470 kb on - strandat 1674.475 kb on - strandat 1674.493 kb on + strandat 1674.494 kb on - strandat 1674.502 kb on + strandat 1674.506 kb on - strandat 1674.506 kb on - strandat 1674.645 kb on + strandat 1674.656 kb on - strandat 1674.673 kb on - strandat 1674.673 kb on - strandat 1674.689 kb on + strandat 1674.706 kb on + strandat 1674.706 kb on + strandat 1674.706 kb on + strandat 1674.761 kb on - strandat 1674.780 kb on - strandat 1674.856 kb on + strand, within EX28DRAFT_1658at 1674.857 kb on - strand, within EX28DRAFT_1658at 1674.857 kb on - strand, within EX28DRAFT_1658at 1674.857 kb on - strand, within EX28DRAFT_1658at 1674.857 kb on - strand, within EX28DRAFT_1658at 1674.873 kb on + strand, within EX28DRAFT_1658at 1674.873 kb on + strand, within EX28DRAFT_1658at 1674.873 kb on + strand, within EX28DRAFT_1658at 1674.874 kb on - strand, within EX28DRAFT_1658at 1674.874 kb on - strand, within EX28DRAFT_1658at 1674.875 kb on + strand, within EX28DRAFT_1658at 1675.013 kb on + strand, within EX28DRAFT_1658at 1675.033 kb on + strand, within EX28DRAFT_1658at 1675.034 kb on - strand, within EX28DRAFT_1658at 1675.048 kb on - strand, within EX28DRAFT_1658at 1675.098 kb on + strand, within EX28DRAFT_1658at 1675.098 kb on + strand, within EX28DRAFT_1658at 1675.166 kb on + strand, within EX28DRAFT_1658at 1675.177 kb on + strand, within EX28DRAFT_1658at 1675.178 kb on - strand, within EX28DRAFT_1658at 1675.236 kb on + strand, within EX28DRAFT_1658at 1675.255 kb on - strand, within EX28DRAFT_1658

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,672,479 - EX28DRAFT_1656 0.34 +0.1
1,672,634 + EX28DRAFT_1656 0.51 -0.0
1,673,052 + +1.0
1,673,147 + -0.3
1,673,148 - -0.0
1,673,164 + +0.6
1,673,165 - -0.3
1,673,166 + -0.8
1,673,167 - +0.2
1,673,167 - +0.1
1,673,167 - -0.8
1,673,191 + +0.2
1,673,192 - -0.3
1,673,215 + -0.1
1,673,262 - -0.3
1,673,262 - -2.2
1,673,265 + -0.1
1,673,265 + -1.1
1,673,265 + -0.3
1,673,266 - -0.0
1,673,266 - -0.2
1,673,266 - +0.6
1,673,300 - +0.9
1,673,300 - -0.3
1,673,597 + EX28DRAFT_1657 0.34 +0.5
1,673,707 + EX28DRAFT_1657 0.43 -0.1
1,673,829 + EX28DRAFT_1657 0.53 +0.5
1,673,830 - EX28DRAFT_1657 0.53 +0.1
1,673,926 - EX28DRAFT_1657 0.61 -0.3
1,674,028 - EX28DRAFT_1657 0.70 +0.3
1,674,469 + -0.1
1,674,469 + +0.0
1,674,469 + -1.1
1,674,470 - +0.0
1,674,475 - +0.4
1,674,493 + +0.1
1,674,494 - +0.7
1,674,502 + -0.7
1,674,506 - -0.6
1,674,506 - -0.4
1,674,645 + -0.3
1,674,656 - -1.7
1,674,673 - -0.9
1,674,673 - -0.0
1,674,689 + -1.1
1,674,706 + +0.7
1,674,706 + -0.2
1,674,706 + -0.2
1,674,761 - -0.3
1,674,780 - +0.2
1,674,856 + EX28DRAFT_1658 0.14 +1.7
1,674,857 - EX28DRAFT_1658 0.15 -0.3
1,674,857 - EX28DRAFT_1658 0.15 -2.5
1,674,857 - EX28DRAFT_1658 0.15 +0.8
1,674,857 - EX28DRAFT_1658 0.15 -0.8
1,674,873 + EX28DRAFT_1658 0.16 -3.0
1,674,873 + EX28DRAFT_1658 0.16 -1.1
1,674,873 + EX28DRAFT_1658 0.16 -2.0
1,674,874 - EX28DRAFT_1658 0.16 -0.8
1,674,874 - EX28DRAFT_1658 0.16 +0.6
1,674,875 + EX28DRAFT_1658 0.16 -0.4
1,675,013 + EX28DRAFT_1658 0.28 +1.0
1,675,033 + EX28DRAFT_1658 0.30 -0.3
1,675,034 - EX28DRAFT_1658 0.30 -0.1
1,675,048 - EX28DRAFT_1658 0.31 -2.1
1,675,098 + EX28DRAFT_1658 0.36 +0.2
1,675,098 + EX28DRAFT_1658 0.36 -0.8
1,675,166 + EX28DRAFT_1658 0.41 -0.7
1,675,177 + EX28DRAFT_1658 0.42 -1.2
1,675,178 - EX28DRAFT_1658 0.42 -0.9
1,675,236 + EX28DRAFT_1658 0.48 -1.4
1,675,255 - EX28DRAFT_1658 0.49 -0.6

Or see this region's nucleotide sequence