Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1656 and EX28DRAFT_1657 are separated by 114 nucleotides EX28DRAFT_1657 and EX28DRAFT_1658 are separated by 297 nucleotides
EX28DRAFT_1656: EX28DRAFT_1656 - Transcriptional regulator, at 1,672,167 to 1,673,078
_1656
EX28DRAFT_1657: EX28DRAFT_1657 - drug resistance transporter, Bcr/CflA subfamily, at 1,673,193 to 1,674,392
_1657
EX28DRAFT_1658: EX28DRAFT_1658 - Cyclopropane fatty acid synthase and related methyltransferases, at 1,674,690 to 1,675,838
_1658
Position (kb)
1673
1674
1675 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1672.479 kb on - strand, within EX28DRAFT_1656 at 1672.634 kb on + strand, within EX28DRAFT_1656 at 1673.052 kb on + strand at 1673.147 kb on + strand at 1673.148 kb on - strand at 1673.164 kb on + strand at 1673.165 kb on - strand at 1673.166 kb on + strand at 1673.167 kb on - strand at 1673.167 kb on - strand at 1673.167 kb on - strand at 1673.191 kb on + strand at 1673.192 kb on - strand at 1673.215 kb on + strand at 1673.262 kb on - strand at 1673.262 kb on - strand at 1673.265 kb on + strand at 1673.265 kb on + strand at 1673.265 kb on + strand at 1673.266 kb on - strand at 1673.266 kb on - strand at 1673.266 kb on - strand at 1673.300 kb on - strand at 1673.300 kb on - strand at 1673.597 kb on + strand, within EX28DRAFT_1657 at 1673.707 kb on + strand, within EX28DRAFT_1657 at 1673.829 kb on + strand, within EX28DRAFT_1657 at 1673.830 kb on - strand, within EX28DRAFT_1657 at 1673.926 kb on - strand, within EX28DRAFT_1657 at 1674.028 kb on - strand, within EX28DRAFT_1657 at 1674.469 kb on + strand at 1674.469 kb on + strand at 1674.469 kb on + strand at 1674.470 kb on - strand at 1674.475 kb on - strand at 1674.493 kb on + strand at 1674.494 kb on - strand at 1674.502 kb on + strand at 1674.506 kb on - strand at 1674.506 kb on - strand at 1674.645 kb on + strand at 1674.656 kb on - strand at 1674.673 kb on - strand at 1674.673 kb on - strand at 1674.689 kb on + strand at 1674.706 kb on + strand at 1674.706 kb on + strand at 1674.706 kb on + strand at 1674.761 kb on - strand at 1674.780 kb on - strand at 1674.856 kb on + strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.874 kb on - strand, within EX28DRAFT_1658 at 1674.874 kb on - strand, within EX28DRAFT_1658 at 1674.875 kb on + strand, within EX28DRAFT_1658 at 1675.013 kb on + strand, within EX28DRAFT_1658 at 1675.033 kb on + strand, within EX28DRAFT_1658 at 1675.034 kb on - strand, within EX28DRAFT_1658 at 1675.048 kb on - strand, within EX28DRAFT_1658 at 1675.098 kb on + strand, within EX28DRAFT_1658 at 1675.098 kb on + strand, within EX28DRAFT_1658 at 1675.166 kb on + strand, within EX28DRAFT_1658 at 1675.177 kb on + strand, within EX28DRAFT_1658 at 1675.178 kb on - strand, within EX28DRAFT_1658 at 1675.236 kb on + strand, within EX28DRAFT_1658 at 1675.255 kb on - strand, within EX28DRAFT_1658
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,672,479 - EX28DRAFT_1656 0.34 +0.1 1,672,634 + EX28DRAFT_1656 0.51 -0.0 1,673,052 + +1.0 1,673,147 + -0.3 1,673,148 - -0.0 1,673,164 + +0.6 1,673,165 - -0.3 1,673,166 + -0.8 1,673,167 - +0.2 1,673,167 - +0.1 1,673,167 - -0.8 1,673,191 + +0.2 1,673,192 - -0.3 1,673,215 + -0.1 1,673,262 - -0.3 1,673,262 - -2.2 1,673,265 + -0.1 1,673,265 + -1.1 1,673,265 + -0.3 1,673,266 - -0.0 1,673,266 - -0.2 1,673,266 - +0.6 1,673,300 - +0.9 1,673,300 - -0.3 1,673,597 + EX28DRAFT_1657 0.34 +0.5 1,673,707 + EX28DRAFT_1657 0.43 -0.1 1,673,829 + EX28DRAFT_1657 0.53 +0.5 1,673,830 - EX28DRAFT_1657 0.53 +0.1 1,673,926 - EX28DRAFT_1657 0.61 -0.3 1,674,028 - EX28DRAFT_1657 0.70 +0.3 1,674,469 + -0.1 1,674,469 + +0.0 1,674,469 + -1.1 1,674,470 - +0.0 1,674,475 - +0.4 1,674,493 + +0.1 1,674,494 - +0.7 1,674,502 + -0.7 1,674,506 - -0.6 1,674,506 - -0.4 1,674,645 + -0.3 1,674,656 - -1.7 1,674,673 - -0.9 1,674,673 - -0.0 1,674,689 + -1.1 1,674,706 + +0.7 1,674,706 + -0.2 1,674,706 + -0.2 1,674,761 - -0.3 1,674,780 - +0.2 1,674,856 + EX28DRAFT_1658 0.14 +1.7 1,674,857 - EX28DRAFT_1658 0.15 -0.3 1,674,857 - EX28DRAFT_1658 0.15 -2.5 1,674,857 - EX28DRAFT_1658 0.15 +0.8 1,674,857 - EX28DRAFT_1658 0.15 -0.8 1,674,873 + EX28DRAFT_1658 0.16 -3.0 1,674,873 + EX28DRAFT_1658 0.16 -1.1 1,674,873 + EX28DRAFT_1658 0.16 -2.0 1,674,874 - EX28DRAFT_1658 0.16 -0.8 1,674,874 - EX28DRAFT_1658 0.16 +0.6 1,674,875 + EX28DRAFT_1658 0.16 -0.4 1,675,013 + EX28DRAFT_1658 0.28 +1.0 1,675,033 + EX28DRAFT_1658 0.30 -0.3 1,675,034 - EX28DRAFT_1658 0.30 -0.1 1,675,048 - EX28DRAFT_1658 0.31 -2.1 1,675,098 + EX28DRAFT_1658 0.36 +0.2 1,675,098 + EX28DRAFT_1658 0.36 -0.8 1,675,166 + EX28DRAFT_1658 0.41 -0.7 1,675,177 + EX28DRAFT_1658 0.42 -1.2 1,675,178 - EX28DRAFT_1658 0.42 -0.9 1,675,236 + EX28DRAFT_1658 0.48 -1.4 1,675,255 - EX28DRAFT_1658 0.49 -0.6
Or see this region's nucleotide sequence