Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1575 and EX28DRAFT_1576 are separated by 1 nucleotides EX28DRAFT_1576 and EX28DRAFT_1577 overlap by 23 nucleotides
EX28DRAFT_1575: EX28DRAFT_1575 - Domain of unknown function (DUF4055), at 1,589,028 to 1,590,416
_1575
EX28DRAFT_1576: EX28DRAFT_1576 - Terminase-like family, at 1,590,418 to 1,591,725
_1576
EX28DRAFT_1577: EX28DRAFT_1577 - Terminase small subunit, at 1,591,703 to 1,592,692
_1577
Position (kb)
1590
1591
1592 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1589.419 kb on + strand, within EX28DRAFT_1575 at 1589.581 kb on + strand, within EX28DRAFT_1575 at 1589.581 kb on + strand, within EX28DRAFT_1575 at 1589.581 kb on + strand, within EX28DRAFT_1575 at 1589.582 kb on - strand, within EX28DRAFT_1575 at 1589.620 kb on + strand, within EX28DRAFT_1575 at 1589.634 kb on - strand, within EX28DRAFT_1575 at 1589.652 kb on + strand, within EX28DRAFT_1575 at 1589.691 kb on - strand, within EX28DRAFT_1575 at 1589.691 kb on - strand, within EX28DRAFT_1575 at 1589.691 kb on - strand, within EX28DRAFT_1575 at 1589.786 kb on - strand, within EX28DRAFT_1575 at 1589.786 kb on - strand, within EX28DRAFT_1575 at 1589.880 kb on - strand, within EX28DRAFT_1575 at 1589.881 kb on + strand, within EX28DRAFT_1575 at 1589.882 kb on - strand, within EX28DRAFT_1575 at 1589.882 kb on - strand, within EX28DRAFT_1575 at 1589.920 kb on - strand, within EX28DRAFT_1575 at 1590.034 kb on + strand, within EX28DRAFT_1575 at 1590.035 kb on - strand, within EX28DRAFT_1575 at 1590.095 kb on + strand, within EX28DRAFT_1575 at 1590.095 kb on + strand, within EX28DRAFT_1575 at 1590.095 kb on + strand, within EX28DRAFT_1575 at 1590.096 kb on - strand, within EX28DRAFT_1575 at 1590.131 kb on - strand, within EX28DRAFT_1575 at 1590.217 kb on + strand, within EX28DRAFT_1575 at 1590.218 kb on - strand, within EX28DRAFT_1575 at 1590.238 kb on + strand, within EX28DRAFT_1575 at 1590.239 kb on - strand, within EX28DRAFT_1575 at 1590.239 kb on - strand, within EX28DRAFT_1575 at 1590.289 kb on + strand at 1590.290 kb on - strand at 1590.299 kb on - strand at 1590.302 kb on + strand at 1590.302 kb on + strand at 1590.303 kb on - strand at 1590.350 kb on - strand at 1590.417 kb on - strand at 1590.685 kb on + strand, within EX28DRAFT_1576 at 1590.686 kb on - strand, within EX28DRAFT_1576 at 1590.686 kb on - strand, within EX28DRAFT_1576 at 1590.686 kb on - strand, within EX28DRAFT_1576 at 1590.777 kb on - strand, within EX28DRAFT_1576 at 1590.782 kb on + strand, within EX28DRAFT_1576 at 1590.782 kb on + strand, within EX28DRAFT_1576 at 1590.783 kb on - strand, within EX28DRAFT_1576 at 1590.783 kb on - strand, within EX28DRAFT_1576 at 1590.819 kb on - strand, within EX28DRAFT_1576 at 1590.913 kb on + strand, within EX28DRAFT_1576 at 1590.913 kb on + strand, within EX28DRAFT_1576 at 1590.961 kb on - strand, within EX28DRAFT_1576 at 1590.961 kb on - strand, within EX28DRAFT_1576 at 1591.116 kb on - strand, within EX28DRAFT_1576 at 1591.127 kb on - strand, within EX28DRAFT_1576 at 1591.127 kb on - strand, within EX28DRAFT_1576 at 1591.170 kb on - strand, within EX28DRAFT_1576 at 1591.286 kb on + strand, within EX28DRAFT_1576 at 1591.287 kb on - strand, within EX28DRAFT_1576 at 1591.293 kb on + strand, within EX28DRAFT_1576 at 1591.448 kb on + strand, within EX28DRAFT_1576 at 1591.448 kb on + strand, within EX28DRAFT_1576 at 1591.566 kb on - strand, within EX28DRAFT_1576 at 1591.633 kb on - strand at 1591.656 kb on - strand at 1591.656 kb on - strand at 1591.705 kb on - strand at 1591.705 kb on - strand at 1591.753 kb on + strand at 1591.877 kb on - strand, within EX28DRAFT_1577 at 1592.020 kb on - strand, within EX28DRAFT_1577 at 1592.333 kb on - strand, within EX28DRAFT_1577 at 1592.333 kb on - strand, within EX28DRAFT_1577 at 1592.348 kb on - strand, within EX28DRAFT_1577 at 1592.374 kb on - strand, within EX28DRAFT_1577 at 1592.388 kb on + strand, within EX28DRAFT_1577 at 1592.557 kb on + strand, within EX28DRAFT_1577 at 1592.557 kb on + strand, within EX28DRAFT_1577 at 1592.571 kb on + strand, within EX28DRAFT_1577 at 1592.571 kb on + strand, within EX28DRAFT_1577 at 1592.572 kb on - strand, within EX28DRAFT_1577 at 1592.572 kb on - strand, within EX28DRAFT_1577 at 1592.589 kb on + strand, within EX28DRAFT_1577 at 1592.590 kb on - strand, within EX28DRAFT_1577 at 1592.593 kb on + strand, within EX28DRAFT_1577 at 1592.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,589,419 + EX28DRAFT_1575 0.28 +0.5 1,589,581 + EX28DRAFT_1575 0.40 -0.5 1,589,581 + EX28DRAFT_1575 0.40 +0.5 1,589,581 + EX28DRAFT_1575 0.40 +0.0 1,589,582 - EX28DRAFT_1575 0.40 -0.1 1,589,620 + EX28DRAFT_1575 0.43 -0.4 1,589,634 - EX28DRAFT_1575 0.44 +0.4 1,589,652 + EX28DRAFT_1575 0.45 -0.3 1,589,691 - EX28DRAFT_1575 0.48 -0.1 1,589,691 - EX28DRAFT_1575 0.48 +0.2 1,589,691 - EX28DRAFT_1575 0.48 -1.9 1,589,786 - EX28DRAFT_1575 0.55 -0.1 1,589,786 - EX28DRAFT_1575 0.55 -0.2 1,589,880 - EX28DRAFT_1575 0.61 +0.4 1,589,881 + EX28DRAFT_1575 0.61 +0.2 1,589,882 - EX28DRAFT_1575 0.61 +0.5 1,589,882 - EX28DRAFT_1575 0.61 +0.3 1,589,920 - EX28DRAFT_1575 0.64 +0.9 1,590,034 + EX28DRAFT_1575 0.72 +0.4 1,590,035 - EX28DRAFT_1575 0.72 +0.3 1,590,095 + EX28DRAFT_1575 0.77 +0.8 1,590,095 + EX28DRAFT_1575 0.77 +0.4 1,590,095 + EX28DRAFT_1575 0.77 +0.3 1,590,096 - EX28DRAFT_1575 0.77 +0.3 1,590,131 - EX28DRAFT_1575 0.79 +0.7 1,590,217 + EX28DRAFT_1575 0.86 -0.4 1,590,218 - EX28DRAFT_1575 0.86 -0.5 1,590,238 + EX28DRAFT_1575 0.87 -0.3 1,590,239 - EX28DRAFT_1575 0.87 -0.1 1,590,239 - EX28DRAFT_1575 0.87 +0.3 1,590,289 + +0.3 1,590,290 - +0.2 1,590,299 - +0.3 1,590,302 + +0.1 1,590,302 + -1.7 1,590,303 - -0.8 1,590,350 - -0.2 1,590,417 - +1.1 1,590,685 + EX28DRAFT_1576 0.20 +0.3 1,590,686 - EX28DRAFT_1576 0.20 +1.8 1,590,686 - EX28DRAFT_1576 0.20 -0.2 1,590,686 - EX28DRAFT_1576 0.20 -1.4 1,590,777 - EX28DRAFT_1576 0.27 +0.4 1,590,782 + EX28DRAFT_1576 0.28 +0.2 1,590,782 + EX28DRAFT_1576 0.28 +0.0 1,590,783 - EX28DRAFT_1576 0.28 +0.5 1,590,783 - EX28DRAFT_1576 0.28 -0.5 1,590,819 - EX28DRAFT_1576 0.31 +0.1 1,590,913 + EX28DRAFT_1576 0.38 +0.2 1,590,913 + EX28DRAFT_1576 0.38 -0.1 1,590,961 - EX28DRAFT_1576 0.42 -0.7 1,590,961 - EX28DRAFT_1576 0.42 -0.9 1,591,116 - EX28DRAFT_1576 0.53 -0.2 1,591,127 - EX28DRAFT_1576 0.54 +0.4 1,591,127 - EX28DRAFT_1576 0.54 -0.8 1,591,170 - EX28DRAFT_1576 0.57 +0.4 1,591,286 + EX28DRAFT_1576 0.66 -0.7 1,591,287 - EX28DRAFT_1576 0.66 +0.8 1,591,293 + EX28DRAFT_1576 0.67 -0.3 1,591,448 + EX28DRAFT_1576 0.79 -0.6 1,591,448 + EX28DRAFT_1576 0.79 -0.6 1,591,566 - EX28DRAFT_1576 0.88 -0.1 1,591,633 - -0.2 1,591,656 - -0.2 1,591,656 - -0.8 1,591,705 - -0.2 1,591,705 - +0.7 1,591,753 + +0.7 1,591,877 - EX28DRAFT_1577 0.18 +0.5 1,592,020 - EX28DRAFT_1577 0.32 +0.3 1,592,333 - EX28DRAFT_1577 0.64 +0.1 1,592,333 - EX28DRAFT_1577 0.64 +0.4 1,592,348 - EX28DRAFT_1577 0.65 -0.7 1,592,374 - EX28DRAFT_1577 0.68 +0.7 1,592,388 + EX28DRAFT_1577 0.69 -0.0 1,592,557 + EX28DRAFT_1577 0.86 -0.9 1,592,557 + EX28DRAFT_1577 0.86 -0.5 1,592,571 + EX28DRAFT_1577 0.88 +0.1 1,592,571 + EX28DRAFT_1577 0.88 +0.0 1,592,572 - EX28DRAFT_1577 0.88 +1.2 1,592,572 - EX28DRAFT_1577 0.88 -0.4 1,592,589 + EX28DRAFT_1577 0.89 +0.8 1,592,590 - EX28DRAFT_1577 0.90 -0.2 1,592,593 + EX28DRAFT_1577 0.90 -0.4 1,592,723 - -0.9
Or see this region's nucleotide sequence