Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0533

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0532 and EX28DRAFT_0533 are separated by 40 nucleotidesEX28DRAFT_0533 and EX28DRAFT_0534 overlap by 7 nucleotidesEX28DRAFT_0534 and EX28DRAFT_0535 overlap by 19 nucleotides EX28DRAFT_0532: EX28DRAFT_0532 - Chain length determinant protein, at 527,068 to 528,048 _0532 EX28DRAFT_0533: EX28DRAFT_0533 - phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 528,089 to 528,700 _0533 EX28DRAFT_0534: EX28DRAFT_0534 - imidazoleglycerol phosphate synthase, cyclase subunit, at 528,694 to 529,470 _0534 EX28DRAFT_0535: EX28DRAFT_0535 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16), at 529,452 to 530,189 _0535 Position (kb) 528 529Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 527.127 kb on - strandat 527.135 kb on + strandat 527.190 kb on + strand, within EX28DRAFT_0532at 527.213 kb on + strand, within EX28DRAFT_0532at 527.284 kb on + strand, within EX28DRAFT_0532at 527.285 kb on - strand, within EX28DRAFT_0532at 527.285 kb on - strand, within EX28DRAFT_0532at 527.365 kb on - strand, within EX28DRAFT_0532at 527.412 kb on - strand, within EX28DRAFT_0532at 527.424 kb on + strand, within EX28DRAFT_0532at 527.476 kb on - strand, within EX28DRAFT_0532at 527.518 kb on + strand, within EX28DRAFT_0532at 527.518 kb on + strand, within EX28DRAFT_0532at 527.615 kb on + strand, within EX28DRAFT_0532at 527.735 kb on + strand, within EX28DRAFT_0532at 527.735 kb on + strand, within EX28DRAFT_0532at 527.830 kb on + strand, within EX28DRAFT_0532at 527.874 kb on - strand, within EX28DRAFT_0532at 527.874 kb on - strand, within EX28DRAFT_0532at 527.886 kb on + strand, within EX28DRAFT_0532at 527.887 kb on - strand, within EX28DRAFT_0532at 527.896 kb on + strand, within EX28DRAFT_0532at 527.999 kb on + strandat 528.023 kb on + strandat 528.031 kb on + strandat 528.075 kb on + strandat 528.168 kb on + strand, within EX28DRAFT_0533at 528.168 kb on + strand, within EX28DRAFT_0533at 528.212 kb on + strand, within EX28DRAFT_0533at 528.213 kb on - strand, within EX28DRAFT_0533at 528.213 kb on - strand, within EX28DRAFT_0533at 528.265 kb on + strand, within EX28DRAFT_0533at 528.266 kb on - strand, within EX28DRAFT_0533at 528.301 kb on - strand, within EX28DRAFT_0533at 528.301 kb on - strand, within EX28DRAFT_0533at 528.592 kb on + strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.595 kb on - strand, within EX28DRAFT_0533at 528.731 kb on + strandat 528.750 kb on + strandat 528.751 kb on - strandat 528.751 kb on - strandat 529.053 kb on - strand, within EX28DRAFT_0534at 529.074 kb on - strand, within EX28DRAFT_0534at 529.098 kb on + strand, within EX28DRAFT_0534at 529.099 kb on - strand, within EX28DRAFT_0534at 529.177 kb on - strand, within EX28DRAFT_0534at 529.322 kb on + strand, within EX28DRAFT_0534at 529.323 kb on - strand, within EX28DRAFT_0534at 529.435 kb on + strandat 529.450 kb on + strandat 529.450 kb on + strandat 529.450 kb on + strandat 529.451 kb on - strandat 529.451 kb on - strandat 529.490 kb on + strandat 529.566 kb on + strand, within EX28DRAFT_0535at 529.566 kb on + strand, within EX28DRAFT_0535at 529.566 kb on + strand, within EX28DRAFT_0535at 529.567 kb on - strand, within EX28DRAFT_0535

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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527,127 - +0.3
527,135 + -0.8
527,190 + EX28DRAFT_0532 0.12 +0.3
527,213 + EX28DRAFT_0532 0.15 +0.8
527,284 + EX28DRAFT_0532 0.22 -0.5
527,285 - EX28DRAFT_0532 0.22 +0.0
527,285 - EX28DRAFT_0532 0.22 +0.6
527,365 - EX28DRAFT_0532 0.30 -0.4
527,412 - EX28DRAFT_0532 0.35 +0.5
527,424 + EX28DRAFT_0532 0.36 +0.3
527,476 - EX28DRAFT_0532 0.42 -0.7
527,518 + EX28DRAFT_0532 0.46 +0.8
527,518 + EX28DRAFT_0532 0.46 -0.4
527,615 + EX28DRAFT_0532 0.56 -0.4
527,735 + EX28DRAFT_0532 0.68 -0.3
527,735 + EX28DRAFT_0532 0.68 +0.4
527,830 + EX28DRAFT_0532 0.78 +0.7
527,874 - EX28DRAFT_0532 0.82 -0.2
527,874 - EX28DRAFT_0532 0.82 -0.8
527,886 + EX28DRAFT_0532 0.83 -0.2
527,887 - EX28DRAFT_0532 0.83 +0.1
527,896 + EX28DRAFT_0532 0.84 +0.6
527,999 + -0.2
528,023 + -0.9
528,031 + -0.2
528,075 + -0.6
528,168 + EX28DRAFT_0533 0.13 +0.7
528,168 + EX28DRAFT_0533 0.13 -1.0
528,212 + EX28DRAFT_0533 0.20 -1.1
528,213 - EX28DRAFT_0533 0.20 -3.4
528,213 - EX28DRAFT_0533 0.20 -2.5
528,265 + EX28DRAFT_0533 0.29 -2.1
528,266 - EX28DRAFT_0533 0.29 -1.4
528,301 - EX28DRAFT_0533 0.35 +0.9
528,301 - EX28DRAFT_0533 0.35 -3.6
528,592 + EX28DRAFT_0533 0.82 -3.7
528,593 - EX28DRAFT_0533 0.82 -1.9
528,593 - EX28DRAFT_0533 0.82 -1.9
528,593 - EX28DRAFT_0533 0.82 -0.3
528,593 - EX28DRAFT_0533 0.82 -1.9
528,593 - EX28DRAFT_0533 0.82 -1.8
528,595 - EX28DRAFT_0533 0.83 -3.9
528,731 + -2.6
528,750 + -3.4
528,751 - -3.0
528,751 - -3.0
529,053 - EX28DRAFT_0534 0.46 -3.3
529,074 - EX28DRAFT_0534 0.49 -1.1
529,098 + EX28DRAFT_0534 0.52 -3.1
529,099 - EX28DRAFT_0534 0.52 -3.2
529,177 - EX28DRAFT_0534 0.62 -0.3
529,322 + EX28DRAFT_0534 0.81 -2.0
529,323 - EX28DRAFT_0534 0.81 -1.9
529,435 + -0.3
529,450 + -3.8
529,450 + -1.6
529,450 + -2.1
529,451 - -3.4
529,451 - -2.6
529,490 + -2.0
529,566 + EX28DRAFT_0535 0.15 -2.1
529,566 + EX28DRAFT_0535 0.15 -2.6
529,566 + EX28DRAFT_0535 0.15 -1.1
529,567 - EX28DRAFT_0535 0.16 -3.3

Or see this region's nucleotide sequence