Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21885

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21870 and ABIE41_RS21875 are separated by 79 nucleotidesABIE41_RS21875 and ABIE41_RS21880 overlap by 65 nucleotidesABIE41_RS21880 and ABIE41_RS21885 are separated by 98 nucleotidesABIE41_RS21885 and ABIE41_RS21890 are separated by 4 nucleotides ABIE41_RS21870: ABIE41_RS21870 - hypothetical protein, at 4,492,548 to 4,498,163 _RS21870 ABIE41_RS21875: ABIE41_RS21875 - carboxymuconolactone decarboxylase family protein, at 4,498,243 to 4,498,641 _RS21875 ABIE41_RS21880: ABIE41_RS21880 - MerR family transcriptional regulator, at 4,498,577 to 4,499,005 _RS21880 ABIE41_RS21885: ABIE41_RS21885 - ABC-type transport auxiliary lipoprotein family protein, at 4,499,104 to 4,499,703 _RS21885 ABIE41_RS21890: ABIE41_RS21890 - MlaD family protein, at 4,499,708 to 4,500,853 _RS21890 Position (kb) 4499 4500Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4498.125 kb on + strandat 4498.126 kb on - strandat 4498.161 kb on + strandat 4498.181 kb on - strandat 4498.314 kb on - strand, within ABIE41_RS21875at 4498.479 kb on - strand, within ABIE41_RS21875at 4498.723 kb on + strand, within ABIE41_RS21880at 4498.890 kb on + strand, within ABIE41_RS21880at 4498.891 kb on - strand, within ABIE41_RS21880at 4498.891 kb on - strand, within ABIE41_RS21880at 4498.947 kb on + strand, within ABIE41_RS21880at 4498.948 kb on - strand, within ABIE41_RS21880at 4498.948 kb on - strand, within ABIE41_RS21880at 4498.948 kb on - strand, within ABIE41_RS21880at 4499.709 kb on + strandat 4499.724 kb on + strandat 4499.724 kb on + strandat 4499.725 kb on - strandat 4500.143 kb on + strand, within ABIE41_RS21890at 4500.144 kb on - strand, within ABIE41_RS21890at 4500.571 kb on + strand, within ABIE41_RS21890at 4500.572 kb on - strand, within ABIE41_RS21890at 4500.572 kb on - strand, within ABIE41_RS21890at 4500.572 kb on - strand, within ABIE41_RS21890

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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4,498,125 + -1.2
4,498,126 - -2.2
4,498,161 + +1.0
4,498,181 - -0.6
4,498,314 - ABIE41_RS21875 0.18 -2.9
4,498,479 - ABIE41_RS21875 0.59 +1.6
4,498,723 + ABIE41_RS21880 0.34 -0.7
4,498,890 + ABIE41_RS21880 0.73 +0.7
4,498,891 - ABIE41_RS21880 0.73 +0.8
4,498,891 - ABIE41_RS21880 0.73 -0.0
4,498,947 + ABIE41_RS21880 0.86 -0.8
4,498,948 - ABIE41_RS21880 0.86 -1.9
4,498,948 - ABIE41_RS21880 0.86 -0.5
4,498,948 - ABIE41_RS21880 0.86 +1.0
4,499,709 + +1.6
4,499,724 + -0.5
4,499,724 + -2.6
4,499,725 - -0.6
4,500,143 + ABIE41_RS21890 0.38 -4.2
4,500,144 - ABIE41_RS21890 0.38 -1.2
4,500,571 + ABIE41_RS21890 0.75 -0.6
4,500,572 - ABIE41_RS21890 0.75 +0.3
4,500,572 - ABIE41_RS21890 0.75 -0.7
4,500,572 - ABIE41_RS21890 0.75 +0.1

Or see this region's nucleotide sequence