Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13125

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS13120 and ABIE41_RS13125 are separated by 22 nucleotidesABIE41_RS13125 and ABIE41_RS13130 are separated by 199 nucleotidesABIE41_RS13130 and ABIE41_RS13135 are separated by 245 nucleotides ABIE41_RS13120: ABIE41_RS13120 - YfhO family protein, at 2,690,973 to 2,693,426 _RS13120 ABIE41_RS13125: ABIE41_RS13125 - heme-binding protein, at 2,693,449 to 2,693,877 _RS13125 ABIE41_RS13130: ABIE41_RS13130 - peptidoglycan-binding protein LysM, at 2,694,077 to 2,694,514 _RS13130 ABIE41_RS13135: ABIE41_RS13135 - TRAP transporter substrate-binding protein, at 2,694,760 to 2,695,812 _RS13135 Position (kb) 2693 2694Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2692.581 kb on + strand, within ABIE41_RS13120at 2692.581 kb on + strand, within ABIE41_RS13120at 2692.582 kb on - strand, within ABIE41_RS13120at 2692.582 kb on - strand, within ABIE41_RS13120at 2692.582 kb on - strand, within ABIE41_RS13120at 2692.680 kb on + strand, within ABIE41_RS13120at 2692.716 kb on + strand, within ABIE41_RS13120at 2692.717 kb on - strand, within ABIE41_RS13120at 2692.717 kb on - strand, within ABIE41_RS13120at 2692.717 kb on - strand, within ABIE41_RS13120at 2692.717 kb on - strand, within ABIE41_RS13120at 2692.803 kb on + strand, within ABIE41_RS13120at 2692.803 kb on + strand, within ABIE41_RS13120at 2692.803 kb on + strand, within ABIE41_RS13120at 2692.804 kb on - strand, within ABIE41_RS13120at 2692.804 kb on - strand, within ABIE41_RS13120at 2692.804 kb on - strand, within ABIE41_RS13120at 2692.804 kb on - strand, within ABIE41_RS13120at 2692.809 kb on + strand, within ABIE41_RS13120at 2693.070 kb on + strand, within ABIE41_RS13120at 2693.070 kb on + strand, within ABIE41_RS13120at 2693.070 kb on + strand, within ABIE41_RS13120at 2693.070 kb on + strand, within ABIE41_RS13120at 2693.070 kb on + strand, within ABIE41_RS13120at 2693.070 kb on + strand, within ABIE41_RS13120at 2693.071 kb on - strand, within ABIE41_RS13120at 2693.071 kb on - strand, within ABIE41_RS13120at 2693.071 kb on - strand, within ABIE41_RS13120at 2693.639 kb on + strand, within ABIE41_RS13125at 2693.640 kb on - strand, within ABIE41_RS13125at 2694.150 kb on + strand, within ABIE41_RS13130at 2694.150 kb on + strand, within ABIE41_RS13130at 2694.151 kb on - strand, within ABIE41_RS13130at 2694.350 kb on + strand, within ABIE41_RS13130at 2694.350 kb on + strand, within ABIE41_RS13130at 2694.351 kb on - strand, within ABIE41_RS13130at 2694.351 kb on - strand, within ABIE41_RS13130at 2694.422 kb on + strand, within ABIE41_RS13130at 2694.422 kb on + strand, within ABIE41_RS13130at 2694.422 kb on + strand, within ABIE41_RS13130at 2694.422 kb on + strand, within ABIE41_RS13130at 2694.423 kb on - strand, within ABIE41_RS13130at 2694.423 kb on - strand, within ABIE41_RS13130at 2694.682 kb on - strandat 2694.686 kb on + strandat 2694.686 kb on + strandat 2694.687 kb on - strandat 2694.687 kb on - strandat 2694.802 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
2,692,581 + ABIE41_RS13120 0.66 -2.0
2,692,581 + ABIE41_RS13120 0.66 -0.4
2,692,582 - ABIE41_RS13120 0.66 +3.9
2,692,582 - ABIE41_RS13120 0.66 -1.3
2,692,582 - ABIE41_RS13120 0.66 -1.4
2,692,680 + ABIE41_RS13120 0.70 +1.2
2,692,716 + ABIE41_RS13120 0.71 -0.9
2,692,717 - ABIE41_RS13120 0.71 +1.1
2,692,717 - ABIE41_RS13120 0.71 +0.0
2,692,717 - ABIE41_RS13120 0.71 +0.6
2,692,717 - ABIE41_RS13120 0.71 -0.8
2,692,803 + ABIE41_RS13120 0.75 +1.4
2,692,803 + ABIE41_RS13120 0.75 +0.1
2,692,803 + ABIE41_RS13120 0.75 -2.6
2,692,804 - ABIE41_RS13120 0.75 +0.4
2,692,804 - ABIE41_RS13120 0.75 +1.4
2,692,804 - ABIE41_RS13120 0.75 -0.8
2,692,804 - ABIE41_RS13120 0.75 +1.9
2,692,809 + ABIE41_RS13120 0.75 +0.5
2,693,070 + ABIE41_RS13120 0.85 +1.9
2,693,070 + ABIE41_RS13120 0.85 +0.9
2,693,070 + ABIE41_RS13120 0.85 -0.4
2,693,070 + ABIE41_RS13120 0.85 -1.1
2,693,070 + ABIE41_RS13120 0.85 -0.7
2,693,070 + ABIE41_RS13120 0.85 -0.0
2,693,071 - ABIE41_RS13120 0.85 -3.3
2,693,071 - ABIE41_RS13120 0.85 +0.9
2,693,071 - ABIE41_RS13120 0.85 +2.3
2,693,639 + ABIE41_RS13125 0.44 +0.3
2,693,640 - ABIE41_RS13125 0.45 -0.5
2,694,150 + ABIE41_RS13130 0.17 -0.3
2,694,150 + ABIE41_RS13130 0.17 -0.5
2,694,151 - ABIE41_RS13130 0.17 +1.1
2,694,350 + ABIE41_RS13130 0.62 +0.7
2,694,350 + ABIE41_RS13130 0.62 -2.0
2,694,351 - ABIE41_RS13130 0.63 -0.4
2,694,351 - ABIE41_RS13130 0.63 -0.3
2,694,422 + ABIE41_RS13130 0.79 -3.3
2,694,422 + ABIE41_RS13130 0.79 +2.6
2,694,422 + ABIE41_RS13130 0.79 -0.7
2,694,422 + ABIE41_RS13130 0.79 +0.6
2,694,423 - ABIE41_RS13130 0.79 +1.0
2,694,423 - ABIE41_RS13130 0.79 +0.3
2,694,682 - +0.4
2,694,686 + +0.6
2,694,686 + +0.6
2,694,687 - +0.0
2,694,687 - +0.2
2,694,802 - +1.2

Or see this region's nucleotide sequence