Experiment: m-Inositol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11260 and ABIE41_RS11265 are separated by 209 nucleotides ABIE41_RS11265 and ABIE41_RS11270 are separated by 177 nucleotides
ABIE41_RS11260: ABIE41_RS11260 - ABC transporter permease, at 2,314,383 to 2,315,219
_RS11260
ABIE41_RS11265: ABIE41_RS11265 - amidohydrolase family protein, at 2,315,429 to 2,316,658
_RS11265
ABIE41_RS11270: ABIE41_RS11270 - gamma-glutamyltransferase, at 2,316,836 to 2,318,443
_RS11270
Position (kb)
2315
2316
2317 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2314.498 kb on + strand, within ABIE41_RS11260 at 2314.831 kb on + strand, within ABIE41_RS11260 at 2314.831 kb on + strand, within ABIE41_RS11260 at 2314.831 kb on + strand, within ABIE41_RS11260 at 2314.831 kb on + strand, within ABIE41_RS11260 at 2314.832 kb on - strand, within ABIE41_RS11260 at 2314.832 kb on - strand, within ABIE41_RS11260 at 2314.832 kb on - strand, within ABIE41_RS11260 at 2314.832 kb on - strand, within ABIE41_RS11260 at 2315.054 kb on - strand, within ABIE41_RS11260 at 2315.099 kb on + strand, within ABIE41_RS11260 at 2315.099 kb on + strand, within ABIE41_RS11260 at 2315.099 kb on + strand, within ABIE41_RS11260 at 2315.100 kb on - strand, within ABIE41_RS11260 at 2315.100 kb on - strand, within ABIE41_RS11260 at 2315.100 kb on - strand, within ABIE41_RS11260 at 2315.100 kb on - strand, within ABIE41_RS11260 at 2315.100 kb on - strand, within ABIE41_RS11260 at 2315.100 kb on - strand, within ABIE41_RS11260 at 2315.100 kb on - strand, within ABIE41_RS11260 at 2315.101 kb on + strand, within ABIE41_RS11260 at 2315.101 kb on + strand, within ABIE41_RS11260 at 2315.102 kb on - strand, within ABIE41_RS11260 at 2315.278 kb on + strand at 2315.278 kb on + strand at 2315.791 kb on - strand, within ABIE41_RS11265 at 2315.886 kb on - strand, within ABIE41_RS11265 at 2315.886 kb on - strand, within ABIE41_RS11265 at 2315.887 kb on + strand, within ABIE41_RS11265 at 2315.908 kb on - strand, within ABIE41_RS11265 at 2316.095 kb on + strand, within ABIE41_RS11265 at 2316.095 kb on + strand, within ABIE41_RS11265 at 2316.096 kb on - strand, within ABIE41_RS11265 at 2316.096 kb on - strand, within ABIE41_RS11265 at 2316.096 kb on - strand, within ABIE41_RS11265 at 2316.113 kb on + strand, within ABIE41_RS11265 at 2316.113 kb on + strand, within ABIE41_RS11265 at 2316.114 kb on - strand, within ABIE41_RS11265 at 2316.114 kb on - strand, within ABIE41_RS11265 at 2316.114 kb on - strand, within ABIE41_RS11265 at 2316.246 kb on - strand, within ABIE41_RS11265 at 2316.246 kb on - strand, within ABIE41_RS11265 at 2316.246 kb on - strand, within ABIE41_RS11265 at 2316.407 kb on + strand, within ABIE41_RS11265 at 2316.536 kb on + strand at 2316.537 kb on - strand at 2317.135 kb on + strand, within ABIE41_RS11270 at 2317.135 kb on + strand, within ABIE41_RS11270 at 2317.136 kb on - strand, within ABIE41_RS11270 at 2317.136 kb on - strand, within ABIE41_RS11270 at 2317.187 kb on + strand, within ABIE41_RS11270 at 2317.187 kb on + strand, within ABIE41_RS11270 at 2317.188 kb on - strand, within ABIE41_RS11270 at 2317.188 kb on - strand, within ABIE41_RS11270 at 2317.283 kb on + strand, within ABIE41_RS11270 at 2317.284 kb on - strand, within ABIE41_RS11270 at 2317.284 kb on - strand, within ABIE41_RS11270 at 2317.292 kb on + strand, within ABIE41_RS11270 at 2317.292 kb on + strand, within ABIE41_RS11270 at 2317.293 kb on - strand, within ABIE41_RS11270 at 2317.296 kb on - strand, within ABIE41_RS11270 at 2317.376 kb on + strand, within ABIE41_RS11270 at 2317.376 kb on + strand, within ABIE41_RS11270 at 2317.377 kb on - strand, within ABIE41_RS11270 at 2317.481 kb on + strand, within ABIE41_RS11270 at 2317.481 kb on + strand, within ABIE41_RS11270 at 2317.482 kb on - strand, within ABIE41_RS11270 at 2317.482 kb on - strand, within ABIE41_RS11270
Per-strain Table
Position Strand Gene LocusTag Fraction m-Inositol (C) remove 2,314,498 + ABIE41_RS11260 0.14 +0.4 2,314,831 + ABIE41_RS11260 0.54 -2.3 2,314,831 + ABIE41_RS11260 0.54 +0.9 2,314,831 + ABIE41_RS11260 0.54 -0.7 2,314,831 + ABIE41_RS11260 0.54 -1.1 2,314,832 - ABIE41_RS11260 0.54 +0.5 2,314,832 - ABIE41_RS11260 0.54 -0.9 2,314,832 - ABIE41_RS11260 0.54 -0.9 2,314,832 - ABIE41_RS11260 0.54 +1.8 2,315,054 - ABIE41_RS11260 0.80 -0.9 2,315,099 + ABIE41_RS11260 0.86 -0.5 2,315,099 + ABIE41_RS11260 0.86 -0.4 2,315,099 + ABIE41_RS11260 0.86 -1.3 2,315,100 - ABIE41_RS11260 0.86 -1.9 2,315,100 - ABIE41_RS11260 0.86 +0.6 2,315,100 - ABIE41_RS11260 0.86 -0.0 2,315,100 - ABIE41_RS11260 0.86 +0.0 2,315,100 - ABIE41_RS11260 0.86 -0.6 2,315,100 - ABIE41_RS11260 0.86 -0.4 2,315,100 - ABIE41_RS11260 0.86 -0.1 2,315,101 + ABIE41_RS11260 0.86 +0.2 2,315,101 + ABIE41_RS11260 0.86 +0.7 2,315,102 - ABIE41_RS11260 0.86 -1.1 2,315,278 + -2.6 2,315,278 + -2.4 2,315,791 - ABIE41_RS11265 0.29 +0.2 2,315,886 - ABIE41_RS11265 0.37 +0.8 2,315,886 - ABIE41_RS11265 0.37 +0.2 2,315,887 + ABIE41_RS11265 0.37 +0.9 2,315,908 - ABIE41_RS11265 0.39 -1.6 2,316,095 + ABIE41_RS11265 0.54 -0.2 2,316,095 + ABIE41_RS11265 0.54 +0.5 2,316,096 - ABIE41_RS11265 0.54 -0.6 2,316,096 - ABIE41_RS11265 0.54 +1.3 2,316,096 - ABIE41_RS11265 0.54 +0.7 2,316,113 + ABIE41_RS11265 0.56 +1.1 2,316,113 + ABIE41_RS11265 0.56 +0.3 2,316,114 - ABIE41_RS11265 0.56 +0.2 2,316,114 - ABIE41_RS11265 0.56 +0.2 2,316,114 - ABIE41_RS11265 0.56 +0.2 2,316,246 - ABIE41_RS11265 0.66 +3.0 2,316,246 - ABIE41_RS11265 0.66 -1.3 2,316,246 - ABIE41_RS11265 0.66 -0.1 2,316,407 + ABIE41_RS11265 0.80 -2.2 2,316,536 + +0.5 2,316,537 - +0.9 2,317,135 + ABIE41_RS11270 0.19 +0.0 2,317,135 + ABIE41_RS11270 0.19 -0.7 2,317,136 - ABIE41_RS11270 0.19 +0.1 2,317,136 - ABIE41_RS11270 0.19 +2.4 2,317,187 + ABIE41_RS11270 0.22 +0.3 2,317,187 + ABIE41_RS11270 0.22 +0.2 2,317,188 - ABIE41_RS11270 0.22 +2.3 2,317,188 - ABIE41_RS11270 0.22 +0.1 2,317,283 + ABIE41_RS11270 0.28 -1.4 2,317,284 - ABIE41_RS11270 0.28 +0.1 2,317,284 - ABIE41_RS11270 0.28 -0.9 2,317,292 + ABIE41_RS11270 0.28 -3.4 2,317,292 + ABIE41_RS11270 0.28 -1.5 2,317,293 - ABIE41_RS11270 0.28 +0.4 2,317,296 - ABIE41_RS11270 0.29 -1.3 2,317,376 + ABIE41_RS11270 0.34 -0.1 2,317,376 + ABIE41_RS11270 0.34 -0.8 2,317,377 - ABIE41_RS11270 0.34 +0.4 2,317,481 + ABIE41_RS11270 0.40 -2.6 2,317,481 + ABIE41_RS11270 0.40 +0.3 2,317,482 - ABIE41_RS11270 0.40 -0.4 2,317,482 - ABIE41_RS11270 0.40 +0.2
Or see this region's nucleotide sequence