Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08840

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08835 and ABIE41_RS08840 are separated by 160 nucleotidesABIE41_RS08840 and ABIE41_RS08845 are separated by 93 nucleotidesABIE41_RS08845 and ABIE41_RS08850 are separated by 11 nucleotides ABIE41_RS08835: ABIE41_RS08835 - sugar ABC transporter permease, at 1,828,963 to 1,829,823 _RS08835 ABIE41_RS08840: ABIE41_RS08840 - carbohydrate ABC transporter permease, at 1,829,984 to 1,830,802 _RS08840 ABIE41_RS08845: ABIE41_RS08845 - dihydrodipicolinate synthase family protein, at 1,830,896 to 1,831,789 _RS08845 ABIE41_RS08850: ABIE41_RS08850 - GntR family transcriptional regulator, at 1,831,801 to 1,832,478 _RS08850 Position (kb) 1829 1830 1831Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1829.050 kb on + strand, within ABIE41_RS08835at 1829.050 kb on + strand, within ABIE41_RS08835at 1829.050 kb on + strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.051 kb on - strand, within ABIE41_RS08835at 1829.164 kb on + strand, within ABIE41_RS08835at 1829.350 kb on + strand, within ABIE41_RS08835at 1829.350 kb on + strand, within ABIE41_RS08835at 1829.350 kb on + strand, within ABIE41_RS08835at 1829.350 kb on + strand, within ABIE41_RS08835at 1829.350 kb on + strand, within ABIE41_RS08835at 1829.350 kb on + strand, within ABIE41_RS08835at 1829.392 kb on + strand, within ABIE41_RS08835at 1829.392 kb on + strand, within ABIE41_RS08835at 1829.392 kb on + strand, within ABIE41_RS08835at 1829.393 kb on - strand, within ABIE41_RS08835at 1829.429 kb on + strand, within ABIE41_RS08835at 1829.504 kb on - strand, within ABIE41_RS08835at 1829.695 kb on + strand, within ABIE41_RS08835at 1829.695 kb on + strand, within ABIE41_RS08835at 1829.695 kb on + strand, within ABIE41_RS08835at 1829.696 kb on - strand, within ABIE41_RS08835at 1829.696 kb on - strand, within ABIE41_RS08835at 1829.696 kb on - strand, within ABIE41_RS08835at 1829.716 kb on + strand, within ABIE41_RS08835at 1829.791 kb on + strandat 1829.792 kb on - strandat 1829.792 kb on - strandat 1830.014 kb on + strandat 1830.014 kb on + strandat 1830.014 kb on + strandat 1830.015 kb on - strandat 1830.015 kb on - strandat 1830.015 kb on - strandat 1830.015 kb on - strandat 1830.149 kb on + strand, within ABIE41_RS08840at 1830.149 kb on + strand, within ABIE41_RS08840at 1830.149 kb on + strand, within ABIE41_RS08840at 1830.150 kb on - strand, within ABIE41_RS08840at 1830.150 kb on - strand, within ABIE41_RS08840at 1830.157 kb on - strand, within ABIE41_RS08840at 1830.185 kb on + strand, within ABIE41_RS08840at 1830.186 kb on - strand, within ABIE41_RS08840at 1830.186 kb on - strand, within ABIE41_RS08840at 1830.186 kb on - strand, within ABIE41_RS08840at 1830.332 kb on + strand, within ABIE41_RS08840at 1830.332 kb on + strand, within ABIE41_RS08840at 1830.333 kb on - strand, within ABIE41_RS08840at 1830.333 kb on - strand, within ABIE41_RS08840at 1830.449 kb on + strand, within ABIE41_RS08840at 1830.449 kb on + strand, within ABIE41_RS08840at 1830.656 kb on + strand, within ABIE41_RS08840at 1830.656 kb on + strand, within ABIE41_RS08840at 1830.656 kb on + strand, within ABIE41_RS08840at 1831.034 kb on + strand, within ABIE41_RS08845at 1831.232 kb on + strand, within ABIE41_RS08845at 1831.232 kb on + strand, within ABIE41_RS08845at 1831.233 kb on - strand, within ABIE41_RS08845at 1831.233 kb on - strand, within ABIE41_RS08845at 1831.233 kb on - strand, within ABIE41_RS08845at 1831.262 kb on + strand, within ABIE41_RS08845at 1831.319 kb on + strand, within ABIE41_RS08845at 1831.319 kb on + strand, within ABIE41_RS08845at 1831.320 kb on - strand, within ABIE41_RS08845at 1831.320 kb on - strand, within ABIE41_RS08845at 1831.320 kb on - strand, within ABIE41_RS08845at 1831.320 kb on - strand, within ABIE41_RS08845at 1831.427 kb on + strand, within ABIE41_RS08845at 1831.445 kb on + strand, within ABIE41_RS08845at 1831.445 kb on + strand, within ABIE41_RS08845at 1831.446 kb on - strand, within ABIE41_RS08845at 1831.446 kb on - strand, within ABIE41_RS08845at 1831.580 kb on + strand, within ABIE41_RS08845at 1831.580 kb on + strand, within ABIE41_RS08845at 1831.692 kb on - strand, within ABIE41_RS08845

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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1,829,050 + ABIE41_RS08835 0.10 +0.3
1,829,050 + ABIE41_RS08835 0.10 +0.3
1,829,050 + ABIE41_RS08835 0.10 -0.6
1,829,051 - ABIE41_RS08835 0.10 +0.4
1,829,051 - ABIE41_RS08835 0.10 +0.2
1,829,051 - ABIE41_RS08835 0.10 +0.7
1,829,051 - ABIE41_RS08835 0.10 +0.6
1,829,051 - ABIE41_RS08835 0.10 +0.0
1,829,051 - ABIE41_RS08835 0.10 -0.1
1,829,051 - ABIE41_RS08835 0.10 +0.1
1,829,051 - ABIE41_RS08835 0.10 +0.5
1,829,051 - ABIE41_RS08835 0.10 +0.9
1,829,164 + ABIE41_RS08835 0.23 -1.6
1,829,350 + ABIE41_RS08835 0.45 +0.3
1,829,350 + ABIE41_RS08835 0.45 -0.2
1,829,350 + ABIE41_RS08835 0.45 +0.3
1,829,350 + ABIE41_RS08835 0.45 +0.3
1,829,350 + ABIE41_RS08835 0.45 +1.1
1,829,350 + ABIE41_RS08835 0.45 -2.2
1,829,392 + ABIE41_RS08835 0.50 -0.5
1,829,392 + ABIE41_RS08835 0.50 +0.2
1,829,392 + ABIE41_RS08835 0.50 +0.3
1,829,393 - ABIE41_RS08835 0.50 +1.0
1,829,429 + ABIE41_RS08835 0.54 +1.3
1,829,504 - ABIE41_RS08835 0.63 +0.5
1,829,695 + ABIE41_RS08835 0.85 -2.7
1,829,695 + ABIE41_RS08835 0.85 +0.6
1,829,695 + ABIE41_RS08835 0.85 +0.2
1,829,696 - ABIE41_RS08835 0.85 +2.6
1,829,696 - ABIE41_RS08835 0.85 +0.8
1,829,696 - ABIE41_RS08835 0.85 -1.9
1,829,716 + ABIE41_RS08835 0.87 +0.5
1,829,791 + -0.6
1,829,792 - -0.6
1,829,792 - -1.0
1,830,014 + -1.4
1,830,014 + +0.9
1,830,014 + -0.1
1,830,015 - +0.3
1,830,015 - +0.7
1,830,015 - -0.7
1,830,015 - +0.4
1,830,149 + ABIE41_RS08840 0.20 -1.3
1,830,149 + ABIE41_RS08840 0.20 +3.2
1,830,149 + ABIE41_RS08840 0.20 +0.2
1,830,150 - ABIE41_RS08840 0.20 -0.1
1,830,150 - ABIE41_RS08840 0.20 +1.2
1,830,157 - ABIE41_RS08840 0.21 +0.5
1,830,185 + ABIE41_RS08840 0.25 -1.0
1,830,186 - ABIE41_RS08840 0.25 +0.3
1,830,186 - ABIE41_RS08840 0.25 -1.4
1,830,186 - ABIE41_RS08840 0.25 +0.0
1,830,332 + ABIE41_RS08840 0.42 -0.7
1,830,332 + ABIE41_RS08840 0.42 -0.6
1,830,333 - ABIE41_RS08840 0.43 -0.7
1,830,333 - ABIE41_RS08840 0.43 -0.9
1,830,449 + ABIE41_RS08840 0.57 -0.3
1,830,449 + ABIE41_RS08840 0.57 +3.2
1,830,656 + ABIE41_RS08840 0.82 -0.6
1,830,656 + ABIE41_RS08840 0.82 -0.2
1,830,656 + ABIE41_RS08840 0.82 -0.4
1,831,034 + ABIE41_RS08845 0.15 -0.2
1,831,232 + ABIE41_RS08845 0.38 -0.4
1,831,232 + ABIE41_RS08845 0.38 +0.3
1,831,233 - ABIE41_RS08845 0.38 +0.4
1,831,233 - ABIE41_RS08845 0.38 +0.6
1,831,233 - ABIE41_RS08845 0.38 +0.1
1,831,262 + ABIE41_RS08845 0.41 +0.1
1,831,319 + ABIE41_RS08845 0.47 +1.0
1,831,319 + ABIE41_RS08845 0.47 +0.7
1,831,320 - ABIE41_RS08845 0.47 -0.6
1,831,320 - ABIE41_RS08845 0.47 -0.2
1,831,320 - ABIE41_RS08845 0.47 -0.3
1,831,320 - ABIE41_RS08845 0.47 +0.2
1,831,427 + ABIE41_RS08845 0.59 -0.4
1,831,445 + ABIE41_RS08845 0.61 -0.2
1,831,445 + ABIE41_RS08845 0.61 -0.4
1,831,446 - ABIE41_RS08845 0.62 -0.4
1,831,446 - ABIE41_RS08845 0.62 -2.3
1,831,580 + ABIE41_RS08845 0.77 +1.0
1,831,580 + ABIE41_RS08845 0.77 +0.4
1,831,692 - ABIE41_RS08845 0.89 +0.6

Or see this region's nucleotide sequence