Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21475

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21470 and ABIE40_RS21475 are separated by 47 nucleotidesABIE40_RS21475 and ABIE40_RS21480 are separated by 78 nucleotides ABIE40_RS21470: ABIE40_RS21470 - M20/M25/M40 family metallo-hydrolase, at 413,069 to 414,439 _RS21470 ABIE40_RS21475: ABIE40_RS21475 - transporter substrate-binding domain-containing protein, at 414,487 to 415,266 _RS21475 ABIE40_RS21480: ABIE40_RS21480 - aminotransferase, at 415,345 to 416,478 _RS21480 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 413.519 kb on + strand, within ABIE40_RS21470at 413.520 kb on - strand, within ABIE40_RS21470at 413.520 kb on - strand, within ABIE40_RS21470at 413.544 kb on + strand, within ABIE40_RS21470at 413.544 kb on + strand, within ABIE40_RS21470at 413.544 kb on + strand, within ABIE40_RS21470at 413.545 kb on - strand, within ABIE40_RS21470at 413.598 kb on + strand, within ABIE40_RS21470at 413.598 kb on + strand, within ABIE40_RS21470at 413.598 kb on + strand, within ABIE40_RS21470at 413.599 kb on - strand, within ABIE40_RS21470at 413.599 kb on - strand, within ABIE40_RS21470at 413.599 kb on - strand, within ABIE40_RS21470at 413.599 kb on - strand, within ABIE40_RS21470at 413.599 kb on - strand, within ABIE40_RS21470at 413.727 kb on + strand, within ABIE40_RS21470at 413.727 kb on + strand, within ABIE40_RS21470at 413.728 kb on - strand, within ABIE40_RS21470at 413.728 kb on - strand, within ABIE40_RS21470at 413.728 kb on - strand, within ABIE40_RS21470at 413.747 kb on - strand, within ABIE40_RS21470at 413.747 kb on - strand, within ABIE40_RS21470at 413.928 kb on + strand, within ABIE40_RS21470at 413.928 kb on + strand, within ABIE40_RS21470at 414.132 kb on + strand, within ABIE40_RS21470at 414.132 kb on + strand, within ABIE40_RS21470at 414.132 kb on + strand, within ABIE40_RS21470at 414.133 kb on - strand, within ABIE40_RS21470at 414.133 kb on - strand, within ABIE40_RS21470at 414.133 kb on - strand, within ABIE40_RS21470at 414.210 kb on + strand, within ABIE40_RS21470at 414.211 kb on - strand, within ABIE40_RS21470at 414.219 kb on + strand, within ABIE40_RS21470at 414.219 kb on + strand, within ABIE40_RS21470at 414.220 kb on - strand, within ABIE40_RS21470at 414.220 kb on - strand, within ABIE40_RS21470at 414.220 kb on - strand, within ABIE40_RS21470at 414.220 kb on - strand, within ABIE40_RS21470at 414.220 kb on - strand, within ABIE40_RS21470at 414.220 kb on - strand, within ABIE40_RS21470at 414.220 kb on - strand, within ABIE40_RS21470at 414.220 kb on - strand, within ABIE40_RS21470at 414.439 kb on + strandat 414.439 kb on + strandat 414.439 kb on + strandat 414.439 kb on + strandat 414.439 kb on + strandat 414.440 kb on - strandat 414.440 kb on - strandat 414.440 kb on - strandat 414.440 kb on - strandat 414.468 kb on + strandat 414.788 kb on + strand, within ABIE40_RS21475at 414.788 kb on + strand, within ABIE40_RS21475at 414.788 kb on + strand, within ABIE40_RS21475at 414.853 kb on + strand, within ABIE40_RS21475at 414.853 kb on + strand, within ABIE40_RS21475at 414.853 kb on + strand, within ABIE40_RS21475at 414.959 kb on + strand, within ABIE40_RS21475at 414.960 kb on - strand, within ABIE40_RS21475at 414.960 kb on - strand, within ABIE40_RS21475at 414.960 kb on - strand, within ABIE40_RS21475at 414.960 kb on - strand, within ABIE40_RS21475at 415.064 kb on + strand, within ABIE40_RS21475at 415.064 kb on + strand, within ABIE40_RS21475at 415.064 kb on + strand, within ABIE40_RS21475at 415.065 kb on - strand, within ABIE40_RS21475at 415.065 kb on - strand, within ABIE40_RS21475at 415.065 kb on - strand, within ABIE40_RS21475at 415.247 kb on - strandat 415.266 kb on - strandat 415.427 kb on + strandat 415.427 kb on + strandat 415.428 kb on - strandat 415.443 kb on - strandat 415.443 kb on - strandat 415.443 kb on - strandat 415.443 kb on - strandat 415.539 kb on - strand, within ABIE40_RS21480at 415.539 kb on - strand, within ABIE40_RS21480at 415.727 kb on + strand, within ABIE40_RS21480at 415.727 kb on + strand, within ABIE40_RS21480at 415.805 kb on + strand, within ABIE40_RS21480at 415.805 kb on + strand, within ABIE40_RS21480at 415.805 kb on + strand, within ABIE40_RS21480at 415.805 kb on + strand, within ABIE40_RS21480at 415.805 kb on + strand, within ABIE40_RS21480at 415.806 kb on - strand, within ABIE40_RS21480at 415.806 kb on - strand, within ABIE40_RS21480at 415.806 kb on - strand, within ABIE40_RS21480at 415.844 kb on + strand, within ABIE40_RS21480at 415.844 kb on + strand, within ABIE40_RS21480at 415.901 kb on + strand, within ABIE40_RS21480at 415.902 kb on - strand, within ABIE40_RS21480at 415.965 kb on - strand, within ABIE40_RS21480at 416.132 kb on + strand, within ABIE40_RS21480at 416.144 kb on + strand, within ABIE40_RS21480at 416.144 kb on + strand, within ABIE40_RS21480at 416.145 kb on - strand, within ABIE40_RS21480at 416.145 kb on - strand, within ABIE40_RS21480at 416.145 kb on - strand, within ABIE40_RS21480at 416.262 kb on - strand, within ABIE40_RS21480at 416.262 kb on - strand, within ABIE40_RS21480at 416.262 kb on - strand, within ABIE40_RS21480

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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413,519 + ABIE40_RS21470 0.33 +0.6
413,520 - ABIE40_RS21470 0.33 -1.2
413,520 - ABIE40_RS21470 0.33 -3.3
413,544 + ABIE40_RS21470 0.35 -2.6
413,544 + ABIE40_RS21470 0.35 -2.6
413,544 + ABIE40_RS21470 0.35 +1.0
413,545 - ABIE40_RS21470 0.35 -0.2
413,598 + ABIE40_RS21470 0.39 -0.6
413,598 + ABIE40_RS21470 0.39 -3.6
413,598 + ABIE40_RS21470 0.39 -0.0
413,599 - ABIE40_RS21470 0.39 -0.4
413,599 - ABIE40_RS21470 0.39 +2.1
413,599 - ABIE40_RS21470 0.39 +1.0
413,599 - ABIE40_RS21470 0.39 +0.4
413,599 - ABIE40_RS21470 0.39 -0.9
413,727 + ABIE40_RS21470 0.48 +0.3
413,727 + ABIE40_RS21470 0.48 +1.4
413,728 - ABIE40_RS21470 0.48 -1.8
413,728 - ABIE40_RS21470 0.48 -1.5
413,728 - ABIE40_RS21470 0.48 +0.5
413,747 - ABIE40_RS21470 0.49 -1.2
413,747 - ABIE40_RS21470 0.49 +2.2
413,928 + ABIE40_RS21470 0.63 -1.8
413,928 + ABIE40_RS21470 0.63 +1.1
414,132 + ABIE40_RS21470 0.78 -1.6
414,132 + ABIE40_RS21470 0.78 -0.4
414,132 + ABIE40_RS21470 0.78 -0.7
414,133 - ABIE40_RS21470 0.78 -0.6
414,133 - ABIE40_RS21470 0.78 +0.6
414,133 - ABIE40_RS21470 0.78 +0.4
414,210 + ABIE40_RS21470 0.83 -0.8
414,211 - ABIE40_RS21470 0.83 -1.5
414,219 + ABIE40_RS21470 0.84 +0.3
414,219 + ABIE40_RS21470 0.84 -0.9
414,220 - ABIE40_RS21470 0.84 -1.6
414,220 - ABIE40_RS21470 0.84 -0.6
414,220 - ABIE40_RS21470 0.84 -0.7
414,220 - ABIE40_RS21470 0.84 -0.6
414,220 - ABIE40_RS21470 0.84 +0.2
414,220 - ABIE40_RS21470 0.84 +0.8
414,220 - ABIE40_RS21470 0.84 -3.4
414,220 - ABIE40_RS21470 0.84 +1.8
414,439 + +2.1
414,439 + -0.5
414,439 + -1.4
414,439 + -0.5
414,439 + -0.2
414,440 - +0.6
414,440 - +1.0
414,440 - -1.6
414,440 - -0.0
414,468 + +0.8
414,788 + ABIE40_RS21475 0.39 +2.4
414,788 + ABIE40_RS21475 0.39 +0.2
414,788 + ABIE40_RS21475 0.39 -1.4
414,853 + ABIE40_RS21475 0.47 +0.1
414,853 + ABIE40_RS21475 0.47 +1.7
414,853 + ABIE40_RS21475 0.47 -0.8
414,959 + ABIE40_RS21475 0.61 +1.3
414,960 - ABIE40_RS21475 0.61 +0.2
414,960 - ABIE40_RS21475 0.61 +0.3
414,960 - ABIE40_RS21475 0.61 +1.7
414,960 - ABIE40_RS21475 0.61 +0.2
415,064 + ABIE40_RS21475 0.74 -0.6
415,064 + ABIE40_RS21475 0.74 -2.6
415,064 + ABIE40_RS21475 0.74 -2.5
415,065 - ABIE40_RS21475 0.74 +0.1
415,065 - ABIE40_RS21475 0.74 -1.0
415,065 - ABIE40_RS21475 0.74 +1.7
415,247 - -0.3
415,266 - +0.6
415,427 + -0.2
415,427 + -0.9
415,428 - +0.1
415,443 - -1.5
415,443 - -0.5
415,443 - -0.7
415,443 - +2.2
415,539 - ABIE40_RS21480 0.17 -0.5
415,539 - ABIE40_RS21480 0.17 -1.5
415,727 + ABIE40_RS21480 0.34 -0.6
415,727 + ABIE40_RS21480 0.34 +0.5
415,805 + ABIE40_RS21480 0.41 +1.7
415,805 + ABIE40_RS21480 0.41 +0.0
415,805 + ABIE40_RS21480 0.41 -1.4
415,805 + ABIE40_RS21480 0.41 +1.4
415,805 + ABIE40_RS21480 0.41 +0.9
415,806 - ABIE40_RS21480 0.41 -0.6
415,806 - ABIE40_RS21480 0.41 -1.2
415,806 - ABIE40_RS21480 0.41 +3.5
415,844 + ABIE40_RS21480 0.44 -0.9
415,844 + ABIE40_RS21480 0.44 +0.4
415,901 + ABIE40_RS21480 0.49 -1.7
415,902 - ABIE40_RS21480 0.49 +0.2
415,965 - ABIE40_RS21480 0.55 -0.0
416,132 + ABIE40_RS21480 0.69 -0.8
416,144 + ABIE40_RS21480 0.70 +0.1
416,144 + ABIE40_RS21480 0.70 +2.0
416,145 - ABIE40_RS21480 0.71 -0.6
416,145 - ABIE40_RS21480 0.71 +0.5
416,145 - ABIE40_RS21480 0.71 +0.5
416,262 - ABIE40_RS21480 0.81 +0.3
416,262 - ABIE40_RS21480 0.81 +0.9
416,262 - ABIE40_RS21480 0.81 +2.2

Or see this region's nucleotide sequence