Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS15260

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
3,009,084	+		ABIE40_RS15255	0.36	-2.0
3,009,085	-		ABIE40_RS15255	0.36	+2.3
3,009,085	-		ABIE40_RS15255	0.36	-0.9
3,009,142	+		ABIE40_RS15255	0.42	+1.6
3,009,142	+		ABIE40_RS15255	0.42	+1.4
3,009,142	+		ABIE40_RS15255	0.42	-2.8
3,009,142	+		ABIE40_RS15255	0.42	+0.1
3,009,142	+		ABIE40_RS15255	0.42	-3.1
3,009,142	+		ABIE40_RS15255	0.42	-0.1
3,009,143	-		ABIE40_RS15255	0.42	-2.0
3,009,143	-		ABIE40_RS15255	0.42	-0.1
3,009,143	-		ABIE40_RS15255	0.42	-1.2
3,009,143	-		ABIE40_RS15255	0.42	-3.0
3,009,143	-		ABIE40_RS15255	0.42	+1.5
3,009,265	+		ABIE40_RS15255	0.55	-2.2
3,009,265	+		ABIE40_RS15255	0.55	-1.2
3,009,265	+		ABIE40_RS15255	0.55	+1.1
3,009,265	+		ABIE40_RS15255	0.55	+1.8
3,009,265	+		ABIE40_RS15255	0.55	+2.6
3,009,266	-		ABIE40_RS15255	0.55	-1.4
3,009,266	-		ABIE40_RS15255	0.55	+0.1
3,009,266	-		ABIE40_RS15255	0.55	+1.9
3,009,266	-		ABIE40_RS15255	0.55	+0.8
3,009,398	-		ABIE40_RS15255	0.69	+0.5
3,009,458	+		ABIE40_RS15255	0.75	-0.1
3,009,502	+		ABIE40_RS15255	0.79	+0.1
3,009,565	+		ABIE40_RS15255	0.86	+1.3
3,009,585	+		ABIE40_RS15255	0.88	-1.1
3,009,685	+				-2.1
3,009,711	+				+0.3
3,009,711	+				+0.4
3,009,711	+				-0.4
3,009,711	+				+0.9
3,009,711	+				-0.4
3,009,711	+				+0.3
3,009,711	+				+1.1
3,009,711	+				-2.6
3,009,712	-				+2.1
3,009,712	-				+0.5
3,009,712	-				-2.6
3,009,712	-				-0.1
3,009,712	-				-2.3
3,009,712	-				+0.5
3,009,712	-				+0.8
3,009,712	-				-0.1
3,009,745	+				+0.5
3,009,746	-				+1.2
3,009,746	-				-0.7
3,009,752	+				-1.5
3,009,752	+				-0.3
3,009,752	+				-2.8
3,009,752	+				+1.5
3,009,753	-				+1.0
3,009,753	-				+1.7
3,009,753	-				+0.3
3,009,829	+				-0.7
3,009,829	+				-0.0
3,009,830	-				+1.5
3,009,830	-				-2.2
3,009,830	-				+0.5
3,009,862	+				-0.2
3,009,862	+				-2.7
3,009,936	-				-0.7
3,009,936	-				-1.5
3,010,014	+				-1.8
3,010,014	+				-0.0
3,010,015	-				+0.2
3,010,034	-				+1.2
3,010,164	+		ABIE40_RS15260	0.15	+1.6
3,010,164	+		ABIE40_RS15260	0.15	+1.2
3,010,164	+		ABIE40_RS15260	0.15	+0.6
3,010,165	-		ABIE40_RS15260	0.15	+0.9
3,010,230	+		ABIE40_RS15260	0.22	+0.8
3,010,230	+		ABIE40_RS15260	0.22	+1.2
3,010,231	-		ABIE40_RS15260	0.22	-2.0
3,010,237	+		ABIE40_RS15260	0.23	+0.8
3,010,237	+		ABIE40_RS15260	0.23	+3.1
3,010,237	+		ABIE40_RS15260	0.23	-2.9
3,010,237	+		ABIE40_RS15260	0.23	-3.1
3,010,237	+		ABIE40_RS15260	0.23	-2.2
3,010,237	+		ABIE40_RS15260	0.23	-0.2
3,010,238	-		ABIE40_RS15260	0.23	-1.7
3,010,238	-		ABIE40_RS15260	0.23	+0.7
3,010,238	-		ABIE40_RS15260	0.23	-0.7
3,010,238	-		ABIE40_RS15260	0.23	-1.8
3,010,238	-		ABIE40_RS15260	0.23	-0.9
3,010,238	-		ABIE40_RS15260	0.23	-1.2
3,010,238	-		ABIE40_RS15260	0.23	-1.0
3,010,238	-		ABIE40_RS15260	0.23	+1.0
3,010,238	-		ABIE40_RS15260	0.23	-1.4
3,010,238	-		ABIE40_RS15260	0.23	-3.0
3,010,282	+		ABIE40_RS15260	0.27	+0.2
3,010,282	+		ABIE40_RS15260	0.27	+0.9
3,010,283	-		ABIE40_RS15260	0.28	+0.3
3,010,283	-		ABIE40_RS15260	0.28	+1.4
3,010,292	+		ABIE40_RS15260	0.28	+4.1
3,010,293	-		ABIE40_RS15260	0.29	-0.1
3,010,293	-		ABIE40_RS15260	0.29	+0.8
3,010,293	-		ABIE40_RS15260	0.29	-1.1
3,010,293	-		ABIE40_RS15260	0.29	+0.5
3,010,293	-		ABIE40_RS15260	0.29	-3.6
3,010,329	+		ABIE40_RS15260	0.32	+1.1
3,010,329	+		ABIE40_RS15260	0.32	-1.4
3,010,329	+		ABIE40_RS15260	0.32	-2.3
3,010,329	+		ABIE40_RS15260	0.32	-2.2
3,010,329	+		ABIE40_RS15260	0.32	-0.3
3,010,330	-		ABIE40_RS15260	0.32	-0.9
3,010,330	-		ABIE40_RS15260	0.32	+3.0
3,010,428	+		ABIE40_RS15260	0.42	+0.9
3,010,428	+		ABIE40_RS15260	0.42	+1.9
3,010,428	+		ABIE40_RS15260	0.42	+0.2
3,010,428	+		ABIE40_RS15260	0.42	-0.4
3,010,429	-		ABIE40_RS15260	0.42	-0.6
3,010,429	-		ABIE40_RS15260	0.42	-2.0
3,010,429	-		ABIE40_RS15260	0.42	+1.3
3,010,723	+		ABIE40_RS15260	0.72	+0.7
3,010,723	+		ABIE40_RS15260	0.72	+2.5
3,010,724	-		ABIE40_RS15260	0.72	-2.2
3,010,724	-		ABIE40_RS15260	0.72	+2.3
3,010,724	-		ABIE40_RS15260	0.72	-0.3
3,010,743	+		ABIE40_RS15260	0.74	+2.1
3,010,743	+		ABIE40_RS15260	0.74	+0.0
3,010,744	-		ABIE40_RS15260	0.75	+1.2
3,010,744	-		ABIE40_RS15260	0.75	-1.7
3,010,744	-		ABIE40_RS15260	0.75	+0.5
3,010,998	+				+2.1
3,010,998	+				-1.0
3,011,138	-		ABIE40_RS15265	0.18	+0.5
3,011,181	+		ABIE40_RS15265	0.23	-2.4
3,011,181	+		ABIE40_RS15265	0.23	-0.9
3,011,181	+		ABIE40_RS15265	0.23	-1.0
3,011,182	-		ABIE40_RS15265	0.23	+1.3
3,011,184	+		ABIE40_RS15265	0.24	+1.3
3,011,184	+		ABIE40_RS15265	0.24	+0.6
3,011,184	+		ABIE40_RS15265	0.24	+1.3
3,011,185	-		ABIE40_RS15265	0.24	-2.3
3,011,185	-		ABIE40_RS15265	0.24	+0.8
3,011,347	+		ABIE40_RS15265	0.44	+0.3
3,011,348	-		ABIE40_RS15265	0.44	-3.3
3,011,379	-		ABIE40_RS15265	0.48	+1.2
3,011,502	+		ABIE40_RS15265	0.64	+0.8
3,011,502	+		ABIE40_RS15265	0.64	-2.2
3,011,502	+		ABIE40_RS15265	0.64	+2.2
3,011,502	+		ABIE40_RS15265	0.64	-1.8
3,011,502	+		ABIE40_RS15265	0.64	-4.0
3,011,502	+		ABIE40_RS15265	0.64	+0.7
3,011,503	-		ABIE40_RS15265	0.64	+2.5
3,011,503	-		ABIE40_RS15265	0.64	-0.1
3,011,544	+		ABIE40_RS15265	0.69	+0.1
3,011,544	+		ABIE40_RS15265	0.69	+0.2
3,011,544	+		ABIE40_RS15265	0.69	+1.3
3,011,545	-		ABIE40_RS15265	0.69	-1.8
3,011,545	-		ABIE40_RS15265	0.69	+3.7
3,011,545	-		ABIE40_RS15265	0.69	-2.7
3,011,545	-		ABIE40_RS15265	0.69	-1.4
3,011,545	-		ABIE40_RS15265	0.69	+1.3
3,011,549	-		ABIE40_RS15265	0.70	+0.6
3,011,613	+		ABIE40_RS15265	0.78	+0.1
3,011,631	+		ABIE40_RS15265	0.80	+2.6
3,011,631	+		ABIE40_RS15265	0.80	+1.5
3,011,631	+		ABIE40_RS15265	0.80	-0.2
3,011,631	+		ABIE40_RS15265	0.80	-0.9
3,011,632	-		ABIE40_RS15265	0.80	-0.7
3,011,632	-		ABIE40_RS15265	0.80	+1.2
3,011,632	-		ABIE40_RS15265	0.80	+0.4
3,011,632	-		ABIE40_RS15265	0.80	+0.8
3,011,735	-				+0.2
3,011,735	-				+1.4
3,011,800	+				+1.9
3,011,802	+				-2.7
3,011,803	-				-0.3
3,011,835	+				+0.8
3,011,919	-		ABIE40_RS15270	0.12	+1.3
3,011,919	-		ABIE40_RS15270	0.12	-2.2
3,011,933	+		ABIE40_RS15270	0.13	+0.9
3,011,933	+		ABIE40_RS15270	0.13	+1.0
3,011,933	+		ABIE40_RS15270	0.13	+0.1
3,011,933	+		ABIE40_RS15270	0.13	-0.2
3,011,933	+		ABIE40_RS15270	0.13	-0.4
3,011,934	-		ABIE40_RS15270	0.13	+0.9
3,011,934	-		ABIE40_RS15270	0.13	-0.2
3,011,942	+		ABIE40_RS15270	0.14	-2.8
3,011,942	+		ABIE40_RS15270	0.14	-0.7
3,011,942	+		ABIE40_RS15270	0.14	-0.5
3,011,942	+		ABIE40_RS15270	0.14	+0.4
3,011,942	+		ABIE40_RS15270	0.14	+1.4