Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01060

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01055 and ABIE40_RS01060 are separated by 129 nucleotidesABIE40_RS01060 and ABIE40_RS01065 are separated by 17 nucleotidesABIE40_RS01065 and ABIE40_RS01070 are separated by 72 nucleotides ABIE40_RS01055: ABIE40_RS01055 - translation elongation factor 4, at 212,320 to 214,152 _RS01055 ABIE40_RS01060: ABIE40_RS01060 - XRE family transcriptional regulator, at 214,282 to 214,851 _RS01060 ABIE40_RS01065: ABIE40_RS01065 - GNAT family N-acetyltransferase, at 214,869 to 215,390 _RS01065 ABIE40_RS01070: ABIE40_RS01070 - histone deacetylase family protein, at 215,463 to 216,488 _RS01070 Position (kb) 214 215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 213.419 kb on + strand, within ABIE40_RS01055at 213.420 kb on - strand, within ABIE40_RS01055at 213.420 kb on - strand, within ABIE40_RS01055at 213.506 kb on + strand, within ABIE40_RS01055at 213.516 kb on - strand, within ABIE40_RS01055at 213.907 kb on - strand, within ABIE40_RS01055at 213.908 kb on + strand, within ABIE40_RS01055at 213.908 kb on + strand, within ABIE40_RS01055at 213.909 kb on - strand, within ABIE40_RS01055at 213.909 kb on - strand, within ABIE40_RS01055at 213.909 kb on - strand, within ABIE40_RS01055at 213.909 kb on - strand, within ABIE40_RS01055at 213.909 kb on - strand, within ABIE40_RS01055at 214.152 kb on + strandat 214.153 kb on - strandat 214.153 kb on - strandat 214.153 kb on - strandat 214.153 kb on - strandat 214.153 kb on - strandat 214.154 kb on + strandat 214.154 kb on + strandat 214.155 kb on - strandat 214.155 kb on - strandat 214.155 kb on - strandat 214.155 kb on - strandat 214.206 kb on - strandat 214.206 kb on - strandat 214.281 kb on + strandat 214.282 kb on - strandat 214.282 kb on - strandat 214.561 kb on + strand, within ABIE40_RS01060at 214.562 kb on - strand, within ABIE40_RS01060at 214.674 kb on + strand, within ABIE40_RS01060at 214.675 kb on - strand, within ABIE40_RS01060at 214.675 kb on - strand, within ABIE40_RS01060at 214.686 kb on + strand, within ABIE40_RS01060at 214.686 kb on + strand, within ABIE40_RS01060at 214.686 kb on + strand, within ABIE40_RS01060at 214.686 kb on + strand, within ABIE40_RS01060at 214.686 kb on + strand, within ABIE40_RS01060at 214.687 kb on - strand, within ABIE40_RS01060at 214.687 kb on - strand, within ABIE40_RS01060at 214.687 kb on - strand, within ABIE40_RS01060at 214.687 kb on - strand, within ABIE40_RS01060at 214.687 kb on - strand, within ABIE40_RS01060at 214.687 kb on - strand, within ABIE40_RS01060at 214.820 kb on - strandat 214.865 kb on + strandat 214.865 kb on + strandat 214.865 kb on + strandat 214.865 kb on + strandat 214.865 kb on + strandat 214.865 kb on + strandat 214.865 kb on + strandat 214.866 kb on - strandat 214.866 kb on - strandat 214.866 kb on - strandat 214.866 kb on - strandat 214.983 kb on + strand, within ABIE40_RS01065at 214.983 kb on + strand, within ABIE40_RS01065at 214.983 kb on + strand, within ABIE40_RS01065at 214.983 kb on + strand, within ABIE40_RS01065at 214.986 kb on - strand, within ABIE40_RS01065at 214.986 kb on - strand, within ABIE40_RS01065at 215.283 kb on + strand, within ABIE40_RS01065at 215.284 kb on - strand, within ABIE40_RS01065at 215.284 kb on - strand, within ABIE40_RS01065at 215.326 kb on - strand, within ABIE40_RS01065at 215.326 kb on - strand, within ABIE40_RS01065at 215.370 kb on + strandat 215.475 kb on + strandat 215.520 kb on - strandat 215.690 kb on + strand, within ABIE40_RS01070at 215.690 kb on + strand, within ABIE40_RS01070at 215.691 kb on - strand, within ABIE40_RS01070at 215.691 kb on - strand, within ABIE40_RS01070at 215.793 kb on + strand, within ABIE40_RS01070at 215.793 kb on + strand, within ABIE40_RS01070at 215.794 kb on - strand, within ABIE40_RS01070at 215.794 kb on - strand, within ABIE40_RS01070at 215.796 kb on + strand, within ABIE40_RS01070at 215.797 kb on - strand, within ABIE40_RS01070at 215.797 kb on - strand, within ABIE40_RS01070at 215.822 kb on + strand, within ABIE40_RS01070at 215.835 kb on + strand, within ABIE40_RS01070at 215.835 kb on + strand, within ABIE40_RS01070at 215.835 kb on + strand, within ABIE40_RS01070at 215.835 kb on + strand, within ABIE40_RS01070at 215.835 kb on + strand, within ABIE40_RS01070at 215.835 kb on + strand, within ABIE40_RS01070at 215.835 kb on + strand, within ABIE40_RS01070at 215.835 kb on + strand, within ABIE40_RS01070at 215.836 kb on - strand, within ABIE40_RS01070at 215.836 kb on - strand, within ABIE40_RS01070at 215.836 kb on - strand, within ABIE40_RS01070at 215.836 kb on - strand, within ABIE40_RS01070at 215.836 kb on - strand, within ABIE40_RS01070

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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213,419 + ABIE40_RS01055 0.60 -0.9
213,420 - ABIE40_RS01055 0.60 -0.8
213,420 - ABIE40_RS01055 0.60 -0.9
213,506 + ABIE40_RS01055 0.65 -1.4
213,516 - ABIE40_RS01055 0.65 -1.3
213,907 - ABIE40_RS01055 0.87 -2.3
213,908 + ABIE40_RS01055 0.87 -1.2
213,908 + ABIE40_RS01055 0.87 -1.9
213,909 - ABIE40_RS01055 0.87 -1.3
213,909 - ABIE40_RS01055 0.87 -1.4
213,909 - ABIE40_RS01055 0.87 +0.6
213,909 - ABIE40_RS01055 0.87 -0.4
213,909 - ABIE40_RS01055 0.87 -1.3
214,152 + -1.6
214,153 - +0.7
214,153 - +1.9
214,153 - -1.3
214,153 - -0.8
214,153 - -1.8
214,154 + -1.9
214,154 + -1.6
214,155 - -0.6
214,155 - +0.4
214,155 - -3.2
214,155 - -2.4
214,206 - +0.4
214,206 - +1.6
214,281 + -0.8
214,282 - -0.9
214,282 - +0.3
214,561 + ABIE40_RS01060 0.49 -0.5
214,562 - ABIE40_RS01060 0.49 -0.3
214,674 + ABIE40_RS01060 0.69 +2.8
214,675 - ABIE40_RS01060 0.69 -2.6
214,675 - ABIE40_RS01060 0.69 -2.2
214,686 + ABIE40_RS01060 0.71 +0.7
214,686 + ABIE40_RS01060 0.71 +0.1
214,686 + ABIE40_RS01060 0.71 -2.4
214,686 + ABIE40_RS01060 0.71 +0.0
214,686 + ABIE40_RS01060 0.71 -1.1
214,687 - ABIE40_RS01060 0.71 -0.2
214,687 - ABIE40_RS01060 0.71 +0.1
214,687 - ABIE40_RS01060 0.71 -0.7
214,687 - ABIE40_RS01060 0.71 -0.8
214,687 - ABIE40_RS01060 0.71 -2.3
214,687 - ABIE40_RS01060 0.71 -0.6
214,820 - +0.1
214,865 + +2.4
214,865 + -3.7
214,865 + +0.0
214,865 + -0.6
214,865 + -1.1
214,865 + -0.2
214,865 + +0.9
214,866 - -3.1
214,866 - +1.9
214,866 - -0.4
214,866 - -0.6
214,983 + ABIE40_RS01065 0.22 +0.3
214,983 + ABIE40_RS01065 0.22 +0.8
214,983 + ABIE40_RS01065 0.22 +0.3
214,983 + ABIE40_RS01065 0.22 +0.9
214,986 - ABIE40_RS01065 0.22 -1.4
214,986 - ABIE40_RS01065 0.22 -2.6
215,283 + ABIE40_RS01065 0.79 -0.3
215,284 - ABIE40_RS01065 0.80 +0.6
215,284 - ABIE40_RS01065 0.80 -2.3
215,326 - ABIE40_RS01065 0.88 -4.0
215,326 - ABIE40_RS01065 0.88 +1.1
215,370 + -2.0
215,475 + -0.4
215,520 - -2.8
215,690 + ABIE40_RS01070 0.22 -2.8
215,690 + ABIE40_RS01070 0.22 +1.0
215,691 - ABIE40_RS01070 0.22 -1.5
215,691 - ABIE40_RS01070 0.22 -1.8
215,793 + ABIE40_RS01070 0.32 -0.2
215,793 + ABIE40_RS01070 0.32 -3.8
215,794 - ABIE40_RS01070 0.32 +2.2
215,794 - ABIE40_RS01070 0.32 -2.1
215,796 + ABIE40_RS01070 0.32 -1.2
215,797 - ABIE40_RS01070 0.33 -1.0
215,797 - ABIE40_RS01070 0.33 -1.1
215,822 + ABIE40_RS01070 0.35 +0.2
215,835 + ABIE40_RS01070 0.36 -0.2
215,835 + ABIE40_RS01070 0.36 +0.9
215,835 + ABIE40_RS01070 0.36 -2.8
215,835 + ABIE40_RS01070 0.36 -0.5
215,835 + ABIE40_RS01070 0.36 -3.0
215,835 + ABIE40_RS01070 0.36 +2.4
215,835 + ABIE40_RS01070 0.36 -0.5
215,835 + ABIE40_RS01070 0.36 +0.7
215,836 - ABIE40_RS01070 0.36 -2.3
215,836 - ABIE40_RS01070 0.36 +2.3
215,836 - ABIE40_RS01070 0.36 +0.2
215,836 - ABIE40_RS01070 0.36 -0.7
215,836 - ABIE40_RS01070 0.36 -0.2

Or see this region's nucleotide sequence