Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27995

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27985 and ABID97_RS27990 are separated by 65 nucleotidesABID97_RS27990 and ABID97_RS27995 are separated by 20 nucleotidesABID97_RS27995 and ABID97_RS28000 are separated by 47 nucleotidesABID97_RS28000 and ABID97_RS28005 are separated by 40 nucleotides ABID97_RS27985: ABID97_RS27985 - amino acid ABC transporter substrate-binding protein, at 515,860 to 517,083 _RS27985 ABID97_RS27990: ABID97_RS27990 - carboxymuconolactone decarboxylase family protein, at 517,149 to 517,679 _RS27990 ABID97_RS27995: ABID97_RS27995 - VOC family protein, at 517,700 to 518,707 _RS27995 ABID97_RS28000: ABID97_RS28000 - NADPH-dependent FMN reductase, at 518,755 to 519,342 _RS28000 ABID97_RS28005: ABID97_RS28005 - phosphopyruvate hydratase, at 519,383 to 520,462 _RS28005 Position (kb) 517 518 519Strain fitness (log2 ratio) -2 -1 0 1at 516.791 kb on + strand, within ABID97_RS27985at 517.211 kb on - strand, within ABID97_RS27990at 517.729 kb on - strandat 518.011 kb on - strand, within ABID97_RS27995at 518.070 kb on + strand, within ABID97_RS27995at 518.611 kb on - strandat 519.204 kb on - strand, within ABID97_RS28000

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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516,791 + ABID97_RS27985 0.76 +0.1
517,211 - ABID97_RS27990 0.12 +0.2
517,729 - -0.1
518,011 - ABID97_RS27995 0.31 -0.6
518,070 + ABID97_RS27995 0.37 -2.2
518,611 - -0.0
519,204 - ABID97_RS28000 0.76 +1.7

Or see this region's nucleotide sequence